RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	PPRC1	Q5VV67	1664 aa	Known RBP	33.74	■■■□□ 2.99
PIF1-208	ENST00000560444	POGZ	Q7Z3K3	1410 aa		33.73	■■■□□ 2.99
PIF1-208	ENST00000560444	MYT1L	Q9UL68	1186 aa		33.73	■■■□□ 2.99
PIF1-208	ENST00000560444	KDM5C	P41229	1560 aa		33.7	■■■□□ 2.99
PIF1-208	ENST00000560444	MIER1	Q8N108	512 aa		33.7	■■■□□ 2.99
PIF1-208	ENST00000560444	MLH3	Q9UHC1	1453 aa		33.69	■■■□□ 2.98
PIF1-208	ENST00000560444	ATP10A	O60312	1499 aa		33.68	■■■□□ 2.98
PIF1-208	ENST00000560444	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.68	■■■□□ 2.98
PIF1-208	ENST00000560444	DEPDC5	O75140	1603 aa		33.67	■■■□□ 2.98
PIF1-208	ENST00000560444	TRH	P20396	242 aa	Predicted RBP	33.66	■■■□□ 2.98
PIF1-208	ENST00000560444	NBPF8	Q3BBV2	869 aa		33.66	■■■□□ 2.98
PIF1-208	ENST00000560444	KIDINS220	Q9ULH0	1771 aa		33.66	■■■□□ 2.98
PIF1-208	ENST00000560444	CCDC144A	A2RUR9	1427 aa		33.64	■■■□□ 2.98
PIF1-208	ENST00000560444	RAPGEF3	O95398	923 aa		33.64	■■■□□ 2.98
PIF1-208	ENST00000560444	KANK1	Q14678	1352 aa		33.63	■■■□□ 2.97
PIF1-208	ENST00000560444	EIF4G2	P78344	907 aa	Known RBP eCLIP	33.63	■■■□□ 2.97
PIF1-208	ENST00000560444	PLA2R1	Q13018	1463 aa		33.62	■■■□□ 2.97
PIF1-208	ENST00000560444	UHRF1BP1	Q6BDS2	1440 aa		33.6	■■■□□ 2.97
PIF1-208	ENST00000560444	KIF3B	O15066	747 aa		33.6	■■■□□ 2.97
PIF1-208	ENST00000560444	A2M	P01023	1474 aa		33.58	■■■□□ 2.97
PIF1-208	ENST00000560444	VWDE	Q8N2E2	1590 aa		33.57	■■■□□ 2.97
PIF1-208	ENST00000560444	HIRIP3	Q9BW71	556 aa	Predicted RBP	33.57	■■■□□ 2.97
PIF1-208	ENST00000560444	HECW2	Q9P2P5	1572 aa		33.57	■■■□□ 2.96
PIF1-208	ENST00000560444	HSPA5	P11021	654 aa	Known RBP	33.57	■■■□□ 2.96
PIF1-208	ENST00000560444	PRDM15	P57071	1507 aa	Predicted RBP	33.53	■■■□□ 2.96
PIF1-208	ENST00000560444	RICTOR	Q6R327	1708 aa		33.53	■■■□□ 2.96
PIF1-208	ENST00000560444	TET3	O43151	1660 aa		33.5	■■■□□ 2.95
PIF1-208	ENST00000560444	DDX10	Q13206	875 aa	Known RBP	33.5	■■■□□ 2.95
PIF1-208	ENST00000560444	FRMPD1	Q5SYB0	1578 aa		33.49	■■■□□ 2.95
PIF1-208	ENST00000560444	PTPRT	O14522	1441 aa		33.47	■■■□□ 2.95
PIF1-208	ENST00000560444	MROH1	Q8NDA8	1641 aa		33.47	■■■□□ 2.95
PIF1-208	ENST00000560444		E9PCH4	1651 aa		33.46	■■■□□ 2.95
PIF1-208	ENST00000560444	DCAF11	Q8TEB1	546 aa		33.46	■■■□□ 2.95
PIF1-208	ENST00000560444	RNF17	Q9BXT8	1623 aa	Known RBP	33.44	■■■□□ 2.94
PIF1-208	ENST00000560444	SPATA31E1	Q6ZUB1	1445 aa		33.44	■■■□□ 2.94
PIF1-208	ENST00000560444	COL17A1	Q9UMD9	1497 aa	Predicted RBP	33.44	■■■□□ 2.94
PIF1-208	ENST00000560444	RALGAPB	Q86X10	1494 aa		33.42	■■■□□ 2.94
PIF1-208	ENST00000560444	LMTK2	Q8IWU2	1503 aa		33.42	■■■□□ 2.94
PIF1-208	ENST00000560444	TRPM2	O94759	1503 aa		33.42	■■■□□ 2.94
PIF1-208	ENST00000560444	BCORL1	Q5H9F3	1711 aa		33.42	■■■□□ 2.94
PIF1-208	ENST00000560444	ABCA6	Q8N139	1617 aa		33.4	■■■□□ 2.94
PIF1-208	ENST00000560444	ZNF326	Q5BKZ1	582 aa	Known RBP	33.39	■■■□□ 2.94
PIF1-208	ENST00000560444	KDM2A	Q9Y2K7	1162 aa		33.38	■■■□□ 2.93
PIF1-208	ENST00000560444	ZMYM4	Q5VZL5	1548 aa		33.36	■■■□□ 2.93
PIF1-208	ENST00000560444	YEATS2	Q9ULM3	1422 aa		33.35	■■■□□ 2.93
PIF1-208	ENST00000560444	RGL3	Q3MIN7	710 aa		33.34	■■■□□ 2.93
PIF1-208	ENST00000560444	SPHKAP	Q2M3C7	1700 aa		33.33	■■■□□ 2.93
PIF1-208	ENST00000560444	DIP2C	Q9Y2E4	1556 aa		33.33	■■■□□ 2.93
PIF1-208	ENST00000560444	STAC3	Q96MF2	364 aa		33.33	■■■□□ 2.93
PIF1-208	ENST00000560444	EFCAB6	Q5THR3	1501 aa		33.32	■■■□□ 2.93
PIF1-208	ENST00000560444	WASHC2A	Q641Q2	1341 aa		33.32	■■■□□ 2.92
PIF1-208	ENST00000560444	PRAG1	Q86YV5	1406 aa		33.32	■■■□□ 2.92
PIF1-208	ENST00000560444	USP47	Q96K76	1375 aa		33.29	■■■□□ 2.92
PIF1-208	ENST00000560444	CARD11	Q9BXL7	1154 aa		33.28	■■■□□ 2.92
PIF1-208	ENST00000560444	NEURL4	Q96JN8	1562 aa		33.26	■■■□□ 2.92
PIF1-208	ENST00000560444	GGT6	Q6P531	493 aa		33.26	■■■□□ 2.91
PIF1-208	ENST00000560444	CENPB	P07199	599 aa	Predicted RBP	33.25	■■■□□ 2.91
PIF1-208	ENST00000560444	CCDC7	Q96M83	1385 aa		33.24	■■■□□ 2.91
PIF1-208	ENST00000560444	CLTCL1	P53675	1640 aa		33.22	■■■□□ 2.91
PIF1-208	ENST00000560444	CEP152	O94986	1710 aa		33.22	■■■□□ 2.91
PIF1-208	ENST00000560444	ROCK2	O75116	1388 aa	Known RBP	33.21	■■■□□ 2.91
PIF1-208	ENST00000560444	WASHC2C	Q9Y4E1	1318 aa		33.21	■■■□□ 2.91
PIF1-208	ENST00000560444	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.2	■■■□□ 2.9
PIF1-208	ENST00000560444	C11orf95	C9JLR9	678 aa	Predicted RBP	33.2	■■■□□ 2.9
PIF1-208	ENST00000560444	ANP32C	O43423	234 aa		33.2	■■■□□ 2.9
PIF1-208	ENST00000560444	TRPM1	Q7Z4N2	1603 aa		33.19	■■■□□ 2.9
PIF1-208	ENST00000560444	GPRASP1	Q5JY77	1395 aa		33.18	■■■□□ 2.9
PIF1-208	ENST00000560444	ABCC3	O15438	1527 aa		33.18	■■■□□ 2.9
PIF1-208	ENST00000560444	NPAT	Q14207	1427 aa		33.14	■■■□□ 2.89
PIF1-208	ENST00000560444	KIF7	Q2M1P5	1343 aa		33.13	■■■□□ 2.89
PIF1-208	ENST00000560444	POLR1A	O95602	1720 aa	Predicted RBP	33.13	■■■□□ 2.89
PIF1-208	ENST00000560444	ARHGEF40	Q8TER5	1519 aa		33.12	■■■□□ 2.89
PIF1-208	ENST00000560444	LAMC1	P11047	1609 aa		33.12	■■■□□ 2.89
PIF1-208	ENST00000560444	CNTLN	Q9NXG0	1405 aa		33.11	■■■□□ 2.89
PIF1-208	ENST00000560444	RERE	Q9P2R6	1566 aa		33.11	■■■□□ 2.89
PIF1-208	ENST00000560444	CCER2	I3L3R5	266 aa		33.1	■■■□□ 2.89
PIF1-208	ENST00000560444	ARHGAP31	Q2M1Z3	1444 aa		33.09	■■■□□ 2.89
PIF1-208	ENST00000560444	ZC3H13	Q5T200	1668 aa	Known RBP	33.08	■■■□□ 2.89
PIF1-208	ENST00000560444	YTHDC1	Q96MU7	727 aa	Known RBP	33.08	■■■□□ 2.89
PIF1-208	ENST00000560444	CAMSAP1	Q5T5Y3	1602 aa		33.06	■■■□□ 2.88
PIF1-208	ENST00000560444	NBPF1	Q3BBV0	1214 aa		33.06	■■■□□ 2.88
PIF1-208	ENST00000560444	PPP6R1	Q9UPN7	881 aa		33.06	■■■□□ 2.88
PIF1-208	ENST00000560444	ST20-MTHFS	A0A0A6YYL1	179 aa		33.05	■■■□□ 2.88
PIF1-208	ENST00000560444	AGL	P35573	1532 aa		33.04	■■■□□ 2.88
PIF1-208	ENST00000560444	NOS1	P29475	1434 aa		33.02	■■■□□ 2.88
PIF1-208	ENST00000560444	MADD	Q8WXG6	1647 aa		33.02	■■■□□ 2.88
PIF1-208	ENST00000560444	KIF1B	O60333	1816 aa		33.02	■■■□□ 2.88
PIF1-208	ENST00000560444	UGGT1	Q9NYU2	1555 aa		33.01	■■■□□ 2.87
PIF1-208	ENST00000560444	SIGLEC1	Q9BZZ2	1709 aa		33	■■■□□ 2.87
PIF1-208	ENST00000560444	MYOM2	P54296	1465 aa		32.99	■■■□□ 2.87
PIF1-208	ENST00000560444	ADGRB3	O60242	1522 aa		32.96	■■■□□ 2.87
PIF1-208	ENST00000560444	RPGRIP1L	Q68CZ1	1315 aa		32.93	■■■□□ 2.86
PIF1-208	ENST00000560444	MLEC	Q14165	292 aa		32.91	■■■□□ 2.86
PIF1-208	ENST00000560444	KIAA1210	Q9ULL0	1709 aa		32.9	■■■□□ 2.86
PIF1-208	ENST00000560444	SLC52A1	Q9NWF4	448 aa		32.89	■■■□□ 2.86
PIF1-208	ENST00000560444	NRXN1	Q9ULB1	1477 aa		32.87	■■■□□ 2.85
PIF1-208	ENST00000560444	PIK3C2B	O00750	1634 aa		32.87	■■■□□ 2.85
PIF1-208	ENST00000560444	IFT172	Q9UG01	1749 aa		32.86	■■■□□ 2.85
PIF1-208	ENST00000560444	MROH2A	A6NES4	1674 aa		32.85	■■■□□ 2.85
PIF1-208	ENST00000560444	CHGA	P10645	457 aa	Known RBP	32.85	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms