RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 DDX12PQ92771 950 aa13.44□□□□□ -0.26
VPS13C-208ENST00000559119 GOLGA8CPA6NN73 597 aa13.43□□□□□ -0.26
VPS13C-208ENST00000559119 BHMG1C9JSJ3 638 aaPredicted RBP13.43□□□□□ -0.26
VPS13C-208ENST00000559119 MRPL50Q8N5N7 158 aaKnown RBP13.43□□□□□ -0.26
VPS13C-208ENST00000559119 NBPF3Q9H094 633 aa13.43□□□□□ -0.26
VPS13C-208ENST00000559119 SPDYE16A6NNV3 312 aaPredicted RBP13.41□□□□□ -0.26
VPS13C-208ENST00000559119 PDIA6Q15084 440 aa13.41□□□□□ -0.26
VPS13C-208ENST00000559119 COL9A1P20849 921 aa13.4□□□□□ -0.26
VPS13C-208ENST00000559119 C6orf132Q5T0Z8 1188 aa13.39□□□□□ -0.27
VPS13C-208ENST00000559119 RBM33Q96EV2 1170 aaKnown RBP13.39□□□□□ -0.27
VPS13C-208ENST00000559119 PROX2Q3B8N5 592 aa13.38□□□□□ -0.27
VPS13C-208ENST00000559119 PTPN5P54829 565 aa13.37□□□□□ -0.27
VPS13C-208ENST00000559119 NBR1Q14596 966 aa13.37□□□□□ -0.27
VPS13C-208ENST00000559119 WNT2BQ93097 391 aa13.36□□□□□ -0.27
VPS13C-208ENST00000559119 PLA2G2EQ9NZK7 142 aa13.36□□□□□ -0.27
VPS13C-208ENST00000559119 RABGEF1Q9UJ41 708 aa13.36□□□□□ -0.27
VPS13C-208ENST00000559119 ARIH1Q9Y4X5 557 aaPredicted RBP13.34□□□□□ -0.27
VPS13C-208ENST00000559119 MAP3K7O43318 606 aa13.32□□□□□ -0.28
VPS13C-208ENST00000559119 EN1Q05925 392 aaPredicted RBP13.32□□□□□ -0.28
VPS13C-208ENST00000559119 THSD4Q6ZMP0 1018 aa13.32□□□□□ -0.28
VPS13C-208ENST00000559119 TSHZ2Q9NRE2 1034 aa13.3□□□□□ -0.28
VPS13C-208ENST00000559119 KIAA1468Q9P260 1216 aa13.3□□□□□ -0.28
VPS13C-208ENST00000559119 GRXCR2A6NFK2 248 aa13.29□□□□□ -0.28
VPS13C-208ENST00000559119 ONECUT3O60422 494 aaPredicted RBP13.29□□□□□ -0.28
VPS13C-208ENST00000559119 LAPTM4BQ86VI4 370 aa13.27□□□□□ -0.29
VPS13C-208ENST00000559119 ANKK1Q8NFD2 765 aa13.27□□□□□ -0.29
VPS13C-208ENST00000559119 TRIM6-TRIM34B2RNG4 842 aa13.26□□□□□ -0.29
VPS13C-208ENST00000559119 TSR1Q2NL82 804 aaKnown RBP13.26□□□□□ -0.29
VPS13C-208ENST00000559119 SEPT9Q9UHD8 586 aaPredicted RBP13.22□□□□□ -0.29
VPS13C-208ENST00000559119 PACS2Q86VP3 889 aa13.2□□□□□ -0.3
VPS13C-208ENST00000559119 ZFRQ96KR1 1074 aaKnown RBP13.2□□□□□ -0.3
VPS13C-208ENST00000559119 CERKQ8TCT0 537 aa13.19□□□□□ -0.3
VPS13C-208ENST00000559119 FAM98CQ17RN3 349 aaKnown RBP13.18□□□□□ -0.3
VPS13C-208ENST00000559119 OSBPP22059 807 aa13.17□□□□□ -0.3
VPS13C-208ENST00000559119 PRIM1P49642 420 aaKnown RBP13.17□□□□□ -0.3
VPS13C-208ENST00000559119 BCAMP50895 628 aa13.17□□□□□ -0.3
VPS13C-208ENST00000559119 TSKSQ9UJT2 592 aa13.17□□□□□ -0.3
VPS13C-208ENST00000559119 SOWAHBA6NEL2 793 aa13.16□□□□□ -0.3
VPS13C-208ENST00000559119 CDCA7LQ96GN5 454 aa13.16□□□□□ -0.3
VPS13C-208ENST00000559119 PRSS12P56730 875 aa13.15□□□□□ -0.3
VPS13C-208ENST00000559119 ARHGEF1Q92888 912 aaKnown RBP13.15□□□□□ -0.3
VPS13C-208ENST00000559119 KCNV2Q8TDN2 545 aa13.12□□□□□ -0.31
VPS13C-208ENST00000559119 LRCH3Q96II8 777 aa13.11□□□□□ -0.31
VPS13C-208ENST00000559119 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.11□□□□□ -0.31
VPS13C-208ENST00000559119 CDHR5Q9HBB8 845 aa13.1□□□□□ -0.31
VPS13C-208ENST00000559119 NYAP1Q6ZVC0 841 aa13.09□□□□□ -0.31
VPS13C-208ENST00000559119 NBPF26B4DH59 902 aa13.07□□□□□ -0.32
VPS13C-208ENST00000559119 IFFO2Q5TF58 517 aa13.07□□□□□ -0.32
VPS13C-208ENST00000559119 WBP1LQ9NX94 342 aa13.07□□□□□ -0.32
VPS13C-208ENST00000559119 SMAPO00193 183 aa13.06□□□□□ -0.32
VPS13C-208ENST00000559119 P3H3Q8IVL6 736 aa13.06□□□□□ -0.32
VPS13C-208ENST00000559119 FAM198AQ9UFP1 575 aa13.06□□□□□ -0.32
VPS13C-208ENST00000559119 TSR3Q9UJK0 312 aaKnown RBP13.06□□□□□ -0.32
VPS13C-208ENST00000559119 PNMA3Q9UL41 463 aa13.06□□□□□ -0.32
VPS13C-208ENST00000559119 HPS5Q9UPZ3 1129 aa13.06□□□□□ -0.32
VPS13C-208ENST00000559119 PLCB2Q00722 1185 aa13.05□□□□□ -0.32
VPS13C-208ENST00000559119 TATDN2Q93075 761 aa13.05□□□□□ -0.32
VPS13C-208ENST00000559119 RBM27Q9P2N5 1060 aaKnown RBP13.05□□□□□ -0.32
VPS13C-208ENST00000559119 MLLT3P42568 568 aaPredicted RBP13.04□□□□□ -0.32
VPS13C-208ENST00000559119 NUDT18Q6ZVK8 323 aa13.01□□□□□ -0.33
VPS13C-208ENST00000559119 SAMD7Q7Z3H4 446 aa13.01□□□□□ -0.33
VPS13C-208ENST00000559119 PPP4CP60510 307 aa13□□□□□ -0.33
VPS13C-208ENST00000559119 NPDC1Q9NQX5 325 aaPredicted RBP13□□□□□ -0.33
VPS13C-208ENST00000559119 C3orf80F5H4A9 247 aa12.99□□□□□ -0.33
VPS13C-208ENST00000559119 ITGBL1O95965 494 aaPredicted RBP12.99□□□□□ -0.33
VPS13C-208ENST00000559119 HDGFP51858 240 aaKnown RBP12.99□□□□□ -0.33
VPS13C-208ENST00000559119 A0A0G2JS52 829 aa12.98□□□□□ -0.33
VPS13C-208ENST00000559119 PADI6Q6TGC4 694 aa12.98□□□□□ -0.33
VPS13C-208ENST00000559119 KCNC4Q03721 635 aa12.95□□□□□ -0.34
VPS13C-208ENST00000559119 TTC13Q8NBP0 860 aa12.95□□□□□ -0.34
VPS13C-208ENST00000559119 RNF40O75150 1001 aa12.94□□□□□ -0.34
VPS13C-208ENST00000559119 RGS20O76081 388 aa12.93□□□□□ -0.34
VPS13C-208ENST00000559119 NUTM2FA1L443 756 aa12.91□□□□□ -0.34
VPS13C-208ENST00000559119 SEMA3EO15041 775 aa12.91□□□□□ -0.34
VPS13C-208ENST00000559119 HAP1P54257 671 aaPredicted RBP12.9□□□□□ -0.34
VPS13C-208ENST00000559119 PTGDRQ13258 359 aa12.9□□□□□ -0.34
VPS13C-208ENST00000559119 SLC4A3P48751 1232 aa12.87□□□□□ -0.35
VPS13C-208ENST00000559119 SWT1Q5T5J6 900 aaKnown RBP12.87□□□□□ -0.35
VPS13C-208ENST00000559119 NECTIN2Q92692 538 aa12.87□□□□□ -0.35
VPS13C-208ENST00000559119 SLF2Q8IX21 1173 aa12.85□□□□□ -0.35
VPS13C-208ENST00000559119 EYA1Q99502 592 aa12.85□□□□□ -0.35
VPS13C-208ENST00000559119 FCHSD2O94868 740 aa12.82□□□□□ -0.36
VPS13C-208ENST00000559119 SMYD5Q6GMV2 418 aa12.82□□□□□ -0.36
VPS13C-208ENST00000559119 RBM46Q8TBY0 533 aaKnown RBP12.82□□□□□ -0.36
VPS13C-208ENST00000559119 TJAP1Q5JTD0 557 aa12.8□□□□□ -0.36
VPS13C-208ENST00000559119 TESPA1A2RU30 521 aaPredicted RBP12.79□□□□□ -0.36
VPS13C-208ENST00000559119 DNAJB2P25686 324 aa12.79□□□□□ -0.36
VPS13C-208ENST00000559119 APLP1P51693 650 aa12.79□□□□□ -0.36
VPS13C-208ENST00000559119 MTRQ99707 1265 aa12.79□□□□□ -0.36
VPS13C-208ENST00000559119 IL21Q9HBE4 155 aa12.79□□□□□ -0.36
VPS13C-208ENST00000559119 ADGRG1Q9Y653 693 aa12.78□□□□□ -0.36
VPS13C-208ENST00000559119 FAM161AQ3B820 660 aa12.75□□□□□ -0.37
VPS13C-208ENST00000559119 RBM26Q5T8P6 1007 aaKnown RBP12.75□□□□□ -0.37
VPS13C-208ENST00000559119 IRX2Q9BZI1 471 aaPredicted RBP12.75□□□□□ -0.37
VPS13C-208ENST00000559119 PRR14Q9BWN1 585 aa12.73□□□□□ -0.37
VPS13C-208ENST00000559119 TMEM134Q9H6X4 195 aa12.73□□□□□ -0.37
VPS13C-208ENST00000559119 RCCD1A6NED2 376 aa12.72□□□□□ -0.37
VPS13C-208ENST00000559119 HIC1Q14526 733 aa12.72□□□□□ -0.37
VPS13C-208ENST00000559119 ZNF516Q92618 1163 aa12.71□□□□□ -0.37
VPS13C-208ENST00000559119 KDM2AQ9Y2K7 1162 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms