RNA–Protein interactions for RNA: ENST00000558843.5

COPS2-205, Transcript of COP9 signalosome subunit 2, human

TSL 1 (best)

Gene COPS2, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS2-205	ENST00000558843	RABGEF1	Q9UJ41	708 aa		11.99	□□□□□ -0.49
COPS2-205	ENST00000558843	BBX	Q8WY36	941 aa	Predicted RBP	11.98	□□□□□ -0.49
COPS2-205	ENST00000558843	EPAS1	Q99814	870 aa		11.95	□□□□□ -0.5
COPS2-205	ENST00000558843	C6orf132	Q5T0Z8	1188 aa		11.93	□□□□□ -0.5
COPS2-205	ENST00000558843	IFFO2	Q5TF58	517 aa		11.93	□□□□□ -0.5
COPS2-205	ENST00000558843	ANKK1	Q8NFD2	765 aa		11.92	□□□□□ -0.5
COPS2-205	ENST00000558843	DDX12P	Q92771	950 aa		11.91	□□□□□ -0.5
COPS2-205	ENST00000558843	KIAA1468	Q9P260	1216 aa		11.91	□□□□□ -0.5
COPS2-205	ENST00000558843	LAPTM4B	Q86VI4	370 aa		11.9	□□□□□ -0.5
COPS2-205	ENST00000558843	RBM33	Q96EV2	1170 aa	Known RBP	11.9	□□□□□ -0.5
COPS2-205	ENST00000558843	BCAM	P50895	628 aa		11.88	□□□□□ -0.51
COPS2-205	ENST00000558843		A0A0G2JS52	829 aa		11.87	□□□□□ -0.51
COPS2-205	ENST00000558843	ONECUT3	O60422	494 aa	Predicted RBP	11.87	□□□□□ -0.51
COPS2-205	ENST00000558843	TRIM6-TRIM34	B2RNG4	842 aa		11.86	□□□□□ -0.51
COPS2-205	ENST00000558843	PDIA6	Q15084	440 aa		11.86	□□□□□ -0.51
COPS2-205	ENST00000558843	SPRYD3	Q8NCJ5	442 aa		11.86	□□□□□ -0.51
COPS2-205	ENST00000558843	ZFR	Q96KR1	1074 aa	Known RBP	11.86	□□□□□ -0.51
COPS2-205	ENST00000558843	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.86	□□□□□ -0.51
COPS2-205	ENST00000558843	SOWAHB	A6NEL2	793 aa		11.85	□□□□□ -0.51
COPS2-205	ENST00000558843	NBR1	Q14596	966 aa		11.85	□□□□□ -0.51
COPS2-205	ENST00000558843	EN1	Q05925	392 aa	Predicted RBP	11.84	□□□□□ -0.51
COPS2-205	ENST00000558843	RGS20	O76081	388 aa		11.83	□□□□□ -0.52
COPS2-205	ENST00000558843	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.83	□□□□□ -0.52
COPS2-205	ENST00000558843	TSR1	Q2NL82	804 aa	Known RBP	11.82	□□□□□ -0.52
COPS2-205	ENST00000558843	MAP3K7	O43318	606 aa		11.81	□□□□□ -0.52
COPS2-205	ENST00000558843	ITGBL1	O95965	494 aa	Predicted RBP	11.8	□□□□□ -0.52
COPS2-205	ENST00000558843	FAM98C	Q17RN3	349 aa	Known RBP	11.8	□□□□□ -0.52
COPS2-205	ENST00000558843	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.79	□□□□□ -0.52
COPS2-205	ENST00000558843	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.79	□□□□□ -0.52
COPS2-205	ENST00000558843	WBP1L	Q9NX94	342 aa		11.79	□□□□□ -0.52
COPS2-205	ENST00000558843	NYAP1	Q6ZVC0	841 aa		11.78	□□□□□ -0.52
COPS2-205	ENST00000558843	E2F4	Q16254	413 aa		11.77	□□□□□ -0.53
COPS2-205	ENST00000558843	TSKS	Q9UJT2	592 aa		11.77	□□□□□ -0.53
COPS2-205	ENST00000558843	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.75	□□□□□ -0.53
COPS2-205	ENST00000558843	CFAP44	Q96MT7	982 aa		11.75	□□□□□ -0.53
COPS2-205	ENST00000558843	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.75	□□□□□ -0.53
COPS2-205	ENST00000558843	PACS2	Q86VP3	889 aa		11.74	□□□□□ -0.53
COPS2-205	ENST00000558843	LRCH3	Q96II8	777 aa		11.74	□□□□□ -0.53
COPS2-205	ENST00000558843	PRIM1	P49642	420 aa	Known RBP	11.73	□□□□□ -0.53
COPS2-205	ENST00000558843	RTN4	Q9NQC3	1192 aa	Known RBP	11.73	□□□□□ -0.53
COPS2-205	ENST00000558843	TSR3	Q9UJK0	312 aa	Known RBP	11.73	□□□□□ -0.53
COPS2-205	ENST00000558843	HPS5	Q9UPZ3	1129 aa		11.73	□□□□□ -0.53
COPS2-205	ENST00000558843	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.73	□□□□□ -0.53
COPS2-205	ENST00000558843	WDR70	Q9NW82	654 aa		11.72	□□□□□ -0.53
COPS2-205	ENST00000558843	GRXCR2	A6NFK2	248 aa		11.71	□□□□□ -0.53
COPS2-205	ENST00000558843	IRX2	Q9BZI1	471 aa	Predicted RBP	11.71	□□□□□ -0.53
COPS2-205	ENST00000558843	CDCA7L	Q96GN5	454 aa		11.7	□□□□□ -0.54
COPS2-205	ENST00000558843	PRSS12	P56730	875 aa		11.69	□□□□□ -0.54
COPS2-205	ENST00000558843	KCNC4	Q03721	635 aa		11.69	□□□□□ -0.54
COPS2-205	ENST00000558843	SMAP	O00193	183 aa		11.68	□□□□□ -0.54
COPS2-205	ENST00000558843	FAM198A	Q9UFP1	575 aa		11.68	□□□□□ -0.54
COPS2-205	ENST00000558843	CERK	Q8TCT0	537 aa		11.67	□□□□□ -0.54
COPS2-205	ENST00000558843	CDHR5	Q9HBB8	845 aa		11.66	□□□□□ -0.54
COPS2-205	ENST00000558843	C3orf80	F5H4A9	247 aa		11.65	□□□□□ -0.54
COPS2-205	ENST00000558843	OSBP	P22059	807 aa		11.64	□□□□□ -0.55
COPS2-205	ENST00000558843	SAMD7	Q7Z3H4	446 aa		11.64	□□□□□ -0.55
COPS2-205	ENST00000558843	NBPF26	B4DH59	902 aa		11.63	□□□□□ -0.55
COPS2-205	ENST00000558843	PPP4C	P60510	307 aa		11.63	□□□□□ -0.55
COPS2-205	ENST00000558843	PNMA3	Q9UL41	463 aa		11.63	□□□□□ -0.55
COPS2-205	ENST00000558843	TATDN2	Q93075	761 aa		11.62	□□□□□ -0.55
COPS2-205	ENST00000558843	RBM27	Q9P2N5	1060 aa	Known RBP	11.58	□□□□□ -0.56
COPS2-205	ENST00000558843	NUDT18	Q6ZVK8	323 aa		11.57	□□□□□ -0.56
COPS2-205	ENST00000558843	TJAP1	Q5JTD0	557 aa		11.55	□□□□□ -0.56
COPS2-205	ENST00000558843	RNF40	O75150	1001 aa		11.54	□□□□□ -0.56
COPS2-205	ENST00000558843	PADI6	Q6TGC4	694 aa		11.53	□□□□□ -0.56
COPS2-205	ENST00000558843	TTC13	Q8NBP0	860 aa		11.52	□□□□□ -0.57
COPS2-205	ENST00000558843	MTR	Q99707	1265 aa		11.52	□□□□□ -0.57
COPS2-205	ENST00000558843	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.52	□□□□□ -0.57
COPS2-205	ENST00000558843	HDGF	P51858	240 aa	Known RBP	11.5	□□□□□ -0.57
COPS2-205	ENST00000558843	IL21	Q9HBE4	155 aa		11.5	□□□□□ -0.57
COPS2-205	ENST00000558843	APLP1	P51693	650 aa		11.48	□□□□□ -0.57
COPS2-205	ENST00000558843	SWT1	Q5T5J6	900 aa	Known RBP	11.47	□□□□□ -0.57
COPS2-205	ENST00000558843		Q6ZNB5	142 aa		11.47	□□□□□ -0.57
COPS2-205	ENST00000558843	TSHZ2	Q9NRE2	1034 aa		11.47	□□□□□ -0.57
COPS2-205	ENST00000558843	MLLT3	P42568	568 aa	Predicted RBP	11.46	□□□□□ -0.57
COPS2-205	ENST00000558843	ARHGEF1	Q92888	912 aa	Known RBP	11.45	□□□□□ -0.58
COPS2-205	ENST00000558843	SLF2	Q8IX21	1173 aa		11.44	□□□□□ -0.58
COPS2-205	ENST00000558843	KCNV2	Q8TDN2	545 aa		11.44	□□□□□ -0.58
COPS2-205	ENST00000558843	ZNF516	Q92618	1163 aa		11.44	□□□□□ -0.58
COPS2-205	ENST00000558843	PPP1R18	Q6NYC8	613 aa		11.43	□□□□□ -0.58
COPS2-205	ENST00000558843	NECTIN2	Q92692	538 aa		11.43	□□□□□ -0.58
COPS2-205	ENST00000558843	EYA1	Q99502	592 aa		11.42	□□□□□ -0.58
COPS2-205	ENST00000558843	PRKD2	Q9BZL6	878 aa		11.41	□□□□□ -0.58
COPS2-205	ENST00000558843	COPS2	P61201	443 aa		11.39	□□□□□ -0.59
COPS2-205	ENST00000558843	LAPTM4A	Q15012	233 aa		11.39	□□□□□ -0.59
COPS2-205	ENST00000558843	SLC4A3	P48751	1232 aa		11.38	□□□□□ -0.59
COPS2-205	ENST00000558843	NKX2-3	Q8TAU0	364 aa		11.38	□□□□□ -0.59
COPS2-205	ENST00000558843	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.38	□□□□□ -0.59
COPS2-205	ENST00000558843	GFRA3	O60609	400 aa		11.37	□□□□□ -0.59
COPS2-205	ENST00000558843	PTGDR	Q13258	359 aa		11.37	□□□□□ -0.59
COPS2-205	ENST00000558843		V9GY48	417 aa	Predicted RBP	11.35	□□□□□ -0.59
COPS2-205	ENST00000558843	DNAJB2	P25686	324 aa		11.33	□□□□□ -0.6
COPS2-205	ENST00000558843	LCE2B	O14633	110 aa		11.32	□□□□□ -0.6
COPS2-205	ENST00000558843	PRR14	Q9BWN1	585 aa		11.32	□□□□□ -0.6
COPS2-205	ENST00000558843	ADGRG1	Q9Y653	693 aa		11.32	□□□□□ -0.6
COPS2-205	ENST00000558843	ZPR1	O75312	459 aa		11.31	□□□□□ -0.6
COPS2-205	ENST00000558843	GGCX	P38435	758 aa		11.31	□□□□□ -0.6
COPS2-205	ENST00000558843	RBM46	Q8TBY0	533 aa	Known RBP	11.31	□□□□□ -0.6
COPS2-205	ENST00000558843	PCDHB3	Q9Y5E6	796 aa		11.31	□□□□□ -0.6
COPS2-205	ENST00000558843	NUTM2F	A1L443	756 aa		11.3	□□□□□ -0.6

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