RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 PLCH2O75038 1416 aa16.13■□□□□ 0.17
SPG11-212ENST00000558790 ARHGAP35Q9NRY4 1499 aa16.12■□□□□ 0.17
SPG11-212ENST00000558790 MED1Q15648 1581 aaPredicted RBP16.12■□□□□ 0.17
SPG11-212ENST00000558790 CDC42BPBQ9Y5S2 1711 aa16.11■□□□□ 0.17
SPG11-212ENST00000558790 ARHGEF12Q9NZN5 1544 aa16.11■□□□□ 0.17
SPG11-212ENST00000558790 FMN1Q68DA7 1419 aa16.11■□□□□ 0.17
SPG11-212ENST00000558790 SCAPERQ9BY12 1400 aa16.11■□□□□ 0.17
SPG11-212ENST00000558790 KDM5CP41229 1560 aa16.1■□□□□ 0.17
SPG11-212ENST00000558790 PTPRTO14522 1441 aa16.09■□□□□ 0.17
SPG11-212ENST00000558790 C9orf84Q5VXU9 1444 aa16.08■□□□□ 0.16
SPG11-212ENST00000558790 IQSEC2Q5JU85 1478 aa16.08■□□□□ 0.16
SPG11-212ENST00000558790 SETD1BQ9UPS6 1966 aaKnown RBP16.07■□□□□ 0.16
SPG11-212ENST00000558790 ARHGAP5Q13017 1502 aa16.07■□□□□ 0.16
SPG11-212ENST00000558790 DIP2CQ9Y2E4 1556 aa16.07■□□□□ 0.16
SPG11-212ENST00000558790 PREX2Q70Z35 1606 aa16.07■□□□□ 0.16
SPG11-212ENST00000558790 ABCA6Q8N139 1617 aa16.07■□□□□ 0.16
SPG11-212ENST00000558790 ATP10AO60312 1499 aa16.06■□□□□ 0.16
SPG11-212ENST00000558790 ZNF518AQ6AHZ1 1483 aa16.06■□□□□ 0.16
SPG11-212ENST00000558790 ITSN2Q9NZM3 1697 aa16.05■□□□□ 0.16
SPG11-212ENST00000558790 TROQ12816 1431 aaPredicted RBP16.04■□□□□ 0.16
SPG11-212ENST00000558790 PYGBP11216 843 aa16.04■□□□□ 0.16
SPG11-212ENST00000558790 UHRF1BP1Q6BDS2 1440 aa16.03■□□□□ 0.16
SPG11-212ENST00000558790 CDC42BPAQ5VT25 1732 aa16.03■□□□□ 0.16
SPG11-212ENST00000558790 REREQ9P2R6 1566 aa16.03■□□□□ 0.16
SPG11-212ENST00000558790 C3P01024 1663 aa16.02■□□□□ 0.16
SPG11-212ENST00000558790 RNF25Q96BH1 459 aaPredicted RBP16.02■□□□□ 0.16
SPG11-212ENST00000558790 ABCC1P33527 1531 aa16.02■□□□□ 0.15
SPG11-212ENST00000558790 UBAP1LF5GYI3 381 aa16.01■□□□□ 0.15
SPG11-212ENST00000558790 UBTFP17480 764 aaKnown RBP16.01■□□□□ 0.15
SPG11-212ENST00000558790 ATP1B4Q9UN42 357 aaPredicted RBP16.01■□□□□ 0.15
SPG11-212ENST00000558790 CLIP1P30622 1438 aa16.01■□□□□ 0.15
SPG11-212ENST00000558790 EFCAB2Q5VUJ9 269 aa15.99■□□□□ 0.15
SPG11-212ENST00000558790 KIDINS220Q9ULH0 1771 aa15.98■□□□□ 0.15
SPG11-212ENST00000558790 CDK11AQ9UQ88 783 aaPredicted RBP15.97■□□□□ 0.15
SPG11-212ENST00000558790 CCDC18Q5T9S5 1454 aa15.96■□□□□ 0.14
SPG11-212ENST00000558790 ZNF335Q9H4Z2 1342 aaPredicted RBP15.95■□□□□ 0.14
SPG11-212ENST00000558790 NCOA1Q15788 1441 aa15.95■□□□□ 0.14
SPG11-212ENST00000558790 PAK3O75914 559 aaPredicted RBP15.95■□□□□ 0.14
SPG11-212ENST00000558790 CD44P16070 742 aaKnown RBP15.95■□□□□ 0.14
SPG11-212ENST00000558790 HSPA1LP34931 641 aa15.95■□□□□ 0.14
SPG11-212ENST00000558790 CCDC61Q9Y6R9 512 aa15.95■□□□□ 0.14
SPG11-212ENST00000558790 MLH3Q9UHC1 1453 aa15.95■□□□□ 0.14
SPG11-212ENST00000558790 CHRM1P11229 460 aaPredicted RBP15.93■□□□□ 0.14
SPG11-212ENST00000558790 AFAP1Q8N556 730 aa15.93■□□□□ 0.14
SPG11-212ENST00000558790 AGLP35573 1532 aa15.93■□□□□ 0.14
SPG11-212ENST00000558790 CASKIN1Q8WXD9 1431 aa15.93■□□□□ 0.14
SPG11-212ENST00000558790 TRAPPC8Q9Y2L5 1435 aa15.92■□□□□ 0.14
SPG11-212ENST00000558790 SAMD9LQ8IVG5 1584 aa15.92■□□□□ 0.14
SPG11-212ENST00000558790 ZRANB1Q9UGI0 708 aa15.91■□□□□ 0.14
SPG11-212ENST00000558790 MROH2AA6NES4 1674 aa15.91■□□□□ 0.14
SPG11-212ENST00000558790 FYCO1Q9BQS8 1478 aa15.91■□□□□ 0.14
SPG11-212ENST00000558790 CAMSAP1Q5T5Y3 1602 aa15.9■□□□□ 0.14
SPG11-212ENST00000558790 SUPT6HQ7KZ85 1726 aaKnown RBP15.89■□□□□ 0.13
SPG11-212ENST00000558790 RIOK3O14730 519 aaKnown RBP15.89■□□□□ 0.13
SPG11-212ENST00000558790 SYCP2Q9BX26 1530 aa15.89■□□□□ 0.13
SPG11-212ENST00000558790 MYT1LQ9UL68 1186 aa15.87■□□□□ 0.13
SPG11-212ENST00000558790 NCKAP5LQ9HCH0 1330 aa15.87■□□□□ 0.13
SPG11-212ENST00000558790 INO80Q9ULG1 1556 aaPredicted RBP15.86■□□□□ 0.13
SPG11-212ENST00000558790 PIP4K2BP78356 416 aa15.85■□□□□ 0.13
SPG11-212ENST00000558790 CLTCQ00610 1675 aaKnown RBP15.85■□□□□ 0.13
SPG11-212ENST00000558790 PLXNC1O60486 1568 aa15.84■□□□□ 0.13
SPG11-212ENST00000558790 ZNF142P52746 1687 aaPredicted RBP15.84■□□□□ 0.13
SPG11-212ENST00000558790 C19orf67A6NJJ6 358 aa15.84■□□□□ 0.13
SPG11-212ENST00000558790 CHGAP10645 457 aaKnown RBP15.84■□□□□ 0.13
SPG11-212ENST00000558790 PHF12Q96QT6 1004 aa15.83■□□□□ 0.12
SPG11-212ENST00000558790 ATP7AQ04656 1500 aa15.83■□□□□ 0.12
SPG11-212ENST00000558790 MYO3AQ8NEV4 1616 aa15.83■□□□□ 0.12
SPG11-212ENST00000558790 CNTLNQ9NXG0 1405 aa15.82■□□□□ 0.12
SPG11-212ENST00000558790 GPATCH8Q9UKJ3 1502 aaKnown RBP15.81■□□□□ 0.12
SPG11-212ENST00000558790 ADGBQ8N7X0 1667 aa15.8■□□□□ 0.12
SPG11-212ENST00000558790 ALKQ9UM73 1620 aa15.8■□□□□ 0.12
SPG11-212ENST00000558790 PCDHB8Q9UN66 801 aa15.8■□□□□ 0.12
SPG11-212ENST00000558790 PCDHB13Q9Y5F0 798 aa15.8■□□□□ 0.12
SPG11-212ENST00000558790 MAP3K13O43283 966 aa15.78■□□□□ 0.12
SPG11-212ENST00000558790 KIF12Q96FN5 646 aa15.78■□□□□ 0.12
SPG11-212ENST00000558790 RGS17Q9UGC6 210 aaPredicted RBP15.78■□□□□ 0.12
SPG11-212ENST00000558790 HAX1O00165 279 aa15.77■□□□□ 0.12
SPG11-212ENST00000558790 VGFO15240 615 aaPredicted RBP15.77■□□□□ 0.12
SPG11-212ENST00000558790 ESF1Q9H501 851 aaKnown RBP15.77■□□□□ 0.12
SPG11-212ENST00000558790 TIAM1Q13009 1591 aa15.77■□□□□ 0.11
SPG11-212ENST00000558790 NPATQ14207 1427 aa15.77■□□□□ 0.11
SPG11-212ENST00000558790 ZNF777Q9ULD5 760 aaPredicted RBP15.75■□□□□ 0.11
SPG11-212ENST00000558790 CEP170BQ9Y4F5 1589 aaPredicted RBP15.75■□□□□ 0.11
SPG11-212ENST00000558790 SRCAPQ6ZRS2 3230 aa15.74■□□□□ 0.11
SPG11-212ENST00000558790 PLEKHH2Q8IVE3 1493 aa15.74■□□□□ 0.11
SPG11-212ENST00000558790 ZNF467Q7Z7K2 595 aaPredicted RBP15.74■□□□□ 0.11
SPG11-212ENST00000558790 SETD1AO15047 1707 aaKnown RBP15.74■□□□□ 0.11
SPG11-212ENST00000558790 SPAG9O60271 1321 aaKnown RBP15.73■□□□□ 0.11
SPG11-212ENST00000558790 A2MP01023 1474 aa15.73■□□□□ 0.11
SPG11-212ENST00000558790 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.73■□□□□ 0.11
SPG11-212ENST00000558790 HS6ST3Q8IZP7 471 aa15.73■□□□□ 0.11
SPG11-212ENST00000558790 ZFP91Q96JP5 570 aaPredicted RBP15.73■□□□□ 0.11
SPG11-212ENST00000558790 KIAA1107Q9UPP5 1409 aa15.73■□□□□ 0.11
SPG11-212ENST00000558790 TCOF1Q13428 1488 aaKnown RBP15.72■□□□□ 0.11
SPG11-212ENST00000558790 EVX2Q03828 476 aa15.72■□□□□ 0.11
SPG11-212ENST00000558790 IFNL1Q8IU54 200 aa15.72■□□□□ 0.11
SPG11-212ENST00000558790 TAOK2Q9UL54 1235 aa15.72■□□□□ 0.11
SPG11-212ENST00000558790 EHBP1L1Q8N3D4 1523 aa15.72■□□□□ 0.11
SPG11-212ENST00000558790 POLR1AO95602 1720 aaPredicted RBP15.71■□□□□ 0.11
SPG11-212ENST00000558790 STK25O00506 426 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms