RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.7□□□□□ -0.06
LDLR-208ENST00000558518 MIA2Q96PC5 1412 aa14.69□□□□□ -0.06
LDLR-208ENST00000558518 CLUAP1Q96AJ1 413 aa14.69□□□□□ -0.06
LDLR-208ENST00000558518 BCORL1Q5H9F3 1711 aa14.69□□□□□ -0.06
LDLR-208ENST00000558518 HECW1Q76N89 1606 aa14.68□□□□□ -0.06
LDLR-208ENST00000558518 APAF1O14727 1248 aa14.68□□□□□ -0.06
LDLR-208ENST00000558518 COG6Q9Y2V7 657 aa14.68□□□□□ -0.06
LDLR-208ENST00000558518 KIAA1107Q9UPP5 1409 aa14.68□□□□□ -0.06
LDLR-208ENST00000558518 LRRIQ1Q96JM4 1722 aa14.68□□□□□ -0.06
LDLR-208ENST00000558518 CENPQQ7L2Z9 268 aaPredicted RBP14.68□□□□□ -0.06
LDLR-208ENST00000558518 CTTNBP2Q8WZ74 1663 aa14.68□□□□□ -0.06
LDLR-208ENST00000558518 PLEKHD1A6NEE1 506 aa14.67□□□□□ -0.06
LDLR-208ENST00000558518 GOLGA2Q08379 1002 aa14.67□□□□□ -0.06
LDLR-208ENST00000558518 RRP7AQ9Y3A4 280 aaKnown RBP14.67□□□□□ -0.06
LDLR-208ENST00000558518 WASHC2CQ9Y4E1 1318 aa14.67□□□□□ -0.06
LDLR-208ENST00000558518 NAP1L5Q96NT1 182 aaPredicted RBP14.67□□□□□ -0.06
LDLR-208ENST00000558518 ANKRD30AQ9BXX3 1397 aa14.67□□□□□ -0.06
LDLR-208ENST00000558518 PANK1Q8TE04 598 aa14.66□□□□□ -0.06
LDLR-208ENST00000558518 DNMBPQ6XZF7 1577 aa14.66□□□□□ -0.06
LDLR-208ENST00000558518 TMF1P82094 1093 aa14.65□□□□□ -0.06
LDLR-208ENST00000558518 CHMP7Q8WUX9 453 aaPredicted RBP14.65□□□□□ -0.06
LDLR-208ENST00000558518 ANKRD50Q9ULJ7 1429 aa14.65□□□□□ -0.06
LDLR-208ENST00000558518 C8orf34Q49A92 452 aa14.65□□□□□ -0.06
LDLR-208ENST00000558518 SEC24BO95487 1268 aa14.64□□□□□ -0.07
LDLR-208ENST00000558518 LRPPRCP42704 1394 aaKnown RBP14.64□□□□□ -0.07
LDLR-208ENST00000558518 PZPP20742 1482 aa14.62□□□□□ -0.07
LDLR-208ENST00000558518 URB2Q14146 1524 aaKnown RBP14.62□□□□□ -0.07
LDLR-208ENST00000558518 TCOF1Q13428 1488 aaKnown RBP14.61□□□□□ -0.07
LDLR-208ENST00000558518 IGHDP01880 384 aa14.61□□□□□ -0.07
LDLR-208ENST00000558518 SPINK5Q9NQ38 1064 aaPredicted RBP14.61□□□□□ -0.07
LDLR-208ENST00000558518 DISP3Q9P2K9 1392 aa14.6□□□□□ -0.07
LDLR-208ENST00000558518 UPF2Q9HAU5 1272 aaKnown RBP14.6□□□□□ -0.07
LDLR-208ENST00000558518 CUL7Q14999 1698 aa14.6□□□□□ -0.07
LDLR-208ENST00000558518 BECN1Q14457 450 aa14.6□□□□□ -0.07
LDLR-208ENST00000558518 DUSP27Q5VZP5 1158 aa14.6□□□□□ -0.07
LDLR-208ENST00000558518 GCC2Q8IWJ2 1684 aa14.59□□□□□ -0.07
LDLR-208ENST00000558518 PER1O15534 1290 aaPredicted RBP14.59□□□□□ -0.07
LDLR-208ENST00000558518 ROCK1Q13464 1354 aa14.59□□□□□ -0.07
LDLR-208ENST00000558518 PPP2R1AP30153 589 aa14.58□□□□□ -0.08
LDLR-208ENST00000558518 PLEKHH1Q9ULM0 1364 aa14.58□□□□□ -0.08
LDLR-208ENST00000558518 CC2D2AQ9P2K1 1620 aa14.57□□□□□ -0.08
LDLR-208ENST00000558518 FOXD4L1Q9NU39 408 aa14.56□□□□□ -0.08
LDLR-208ENST00000558518 CHGAP10645 457 aaKnown RBP14.56□□□□□ -0.08
LDLR-208ENST00000558518 MFAP1P55081 439 aaKnown RBP14.56□□□□□ -0.08
LDLR-208ENST00000558518 CCDC144AA2RUR9 1427 aa14.55□□□□□ -0.08
LDLR-208ENST00000558518 TNNQ9UQP3 1299 aa14.55□□□□□ -0.08
LDLR-208ENST00000558518 DMRT2Q9Y5R5 561 aa14.55□□□□□ -0.08
LDLR-208ENST00000558518 CAMSAP2Q08AD1 1489 aa14.55□□□□□ -0.08
LDLR-208ENST00000558518 SAMD9Q5K651 1589 aa14.54□□□□□ -0.08
LDLR-208ENST00000558518 KDM2BQ8NHM5 1336 aa14.54□□□□□ -0.08
LDLR-208ENST00000558518 PARD3Q8TEW0 1356 aa14.54□□□□□ -0.08
LDLR-208ENST00000558518 PANK2Q9BZ23 570 aa14.53□□□□□ -0.08
LDLR-208ENST00000558518 RRAGDQ9NQL2 400 aaPredicted RBP14.53□□□□□ -0.08
LDLR-208ENST00000558518 PLB1Q6P1J6 1458 aa14.52□□□□□ -0.08
LDLR-208ENST00000558518 LAMC3Q9Y6N6 1575 aa14.52□□□□□ -0.09
LDLR-208ENST00000558518 ARHGEF11O15085 1522 aa14.51□□□□□ -0.09
LDLR-208ENST00000558518 RSPH6AQ9H0K4 717 aa14.51□□□□□ -0.09
LDLR-208ENST00000558518 KDM5CP41229 1560 aa14.51□□□□□ -0.09
LDLR-208ENST00000558518 CENPJQ9HC77 1338 aaPredicted RBP14.51□□□□□ -0.09
LDLR-208ENST00000558518 VSIG10Q8N0Z9 540 aa14.51□□□□□ -0.09
LDLR-208ENST00000558518 HSP90AA1P07900 732 aaKnown RBP14.5□□□□□ -0.09
LDLR-208ENST00000558518 PNNQ9H307 717 aaKnown RBP14.5□□□□□ -0.09
LDLR-208ENST00000558518 IQGAP2Q13576 1575 aa14.5□□□□□ -0.09
LDLR-208ENST00000558518 SLFN5Q08AF3 891 aa14.5□□□□□ -0.09
LDLR-208ENST00000558518 UBE2Q2Q8WVN8 375 aa14.5□□□□□ -0.09
LDLR-208ENST00000558518 TESK2Q96S53 571 aa14.5□□□□□ -0.09
LDLR-208ENST00000558518 GOLGA6L3A6NEY3 463 aa14.49□□□□□ -0.09
LDLR-208ENST00000558518 ARID3AQ99856 593 aa14.49□□□□□ -0.09
LDLR-208ENST00000558518 KIAA0586Q9BVV6 1533 aa14.49□□□□□ -0.09
LDLR-208ENST00000558518 FAM43AQ8N2R8 423 aa14.49□□□□□ -0.09
LDLR-208ENST00000558518 RALGAPBQ86X10 1494 aa14.49□□□□□ -0.09
LDLR-208ENST00000558518 C9orf84Q5VXU9 1444 aa14.49□□□□□ -0.09
LDLR-208ENST00000558518 NUP153P49790 1475 aaKnown RBP14.48□□□□□ -0.09
LDLR-208ENST00000558518 JPH4Q96JJ6 628 aa14.47□□□□□ -0.09
LDLR-208ENST00000558518 ZBTB7CA1YPR0 619 aa14.47□□□□□ -0.09
LDLR-208ENST00000558518 FTSJ3Q8IY81 847 aaKnown RBP14.47□□□□□ -0.09
LDLR-208ENST00000558518 TROQ12816 1431 aaPredicted RBP14.46□□□□□ -0.1
LDLR-208ENST00000558518 ERBINQ96RT1 1412 aa14.46□□□□□ -0.1
LDLR-208ENST00000558518 L1TD1Q5T7N2 865 aaKnown RBP14.46□□□□□ -0.1
LDLR-208ENST00000558518 PDZRN3Q9UPQ7 1066 aa14.46□□□□□ -0.1
LDLR-208ENST00000558518 DNMT1P26358 1616 aaKnown RBP14.45□□□□□ -0.1
LDLR-208ENST00000558518 GPATCH8Q9UKJ3 1502 aaKnown RBP14.45□□□□□ -0.1
LDLR-208ENST00000558518 WDR62O43379 1518 aa14.45□□□□□ -0.1
LDLR-208ENST00000558518 TBC1D2Q9BYX2 928 aa14.45□□□□□ -0.1
LDLR-208ENST00000558518 KIF14Q15058 1648 aa14.44□□□□□ -0.1
LDLR-208ENST00000558518 ABCA5Q8WWZ7 1642 aa14.44□□□□□ -0.1
LDLR-208ENST00000558518 SAFB2Q14151 953 aaKnown RBP eCLIP14.44□□□□□ -0.1
LDLR-208ENST00000558518 MBD5Q9P267 1494 aa14.44□□□□□ -0.1
LDLR-208ENST00000558518 E9PSI1 815 aa14.43□□□□□ -0.1
LDLR-208ENST00000558518 TRIM44Q96DX7 344 aaPredicted RBP14.42□□□□□ -0.1
LDLR-208ENST00000558518 PCDHB15Q9Y5E8 787 aa14.42□□□□□ -0.1
LDLR-208ENST00000558518 RLBP1P12271 317 aa14.42□□□□□ -0.1
LDLR-208ENST00000558518 XRCC6P12956 609 aaKnown RBP eCLIP14.42□□□□□ -0.1
LDLR-208ENST00000558518 ZNF608Q9ULD9 1512 aaPredicted RBP14.42□□□□□ -0.1
LDLR-208ENST00000558518 MORC1Q86VD1 984 aa14.41□□□□□ -0.1
LDLR-208ENST00000558518 NUTM2DQ5VT03 806 aaPredicted RBP14.41□□□□□ -0.1
LDLR-208ENST00000558518 NCLP19338 710 aaKnown RBP14.4□□□□□ -0.1
LDLR-208ENST00000558518 CGNL1Q0VF96 1302 aa14.4□□□□□ -0.1
LDLR-208ENST00000558518 U2SURPO15042 1029 aaKnown RBP14.4□□□□□ -0.1
LDLR-208ENST00000558518 ITPRIPQ8IWB1 547 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms