RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 PSEN2P49810 448 aa8.36□□□□□ -1.07
SPG11-206ENST00000558093 TESPA1A2RU30 521 aaPredicted RBP8.35□□□□□ -1.07
SPG11-206ENST00000558093 LSM11P83369 360 aaKnown RBP eCLIP8.35□□□□□ -1.07
SPG11-206ENST00000558093 POTEEQ6S8J3 1075 aa8.35□□□□□ -1.07
SPG11-206ENST00000558093 ANKRD13DQ6ZTN6 518 aa8.35□□□□□ -1.07
SPG11-206ENST00000558093 KRTAP3-3Q9BYR6 98 aa8.35□□□□□ -1.07
SPG11-206ENST00000558093 KRTAP3-2Q9BYR7 98 aa8.35□□□□□ -1.07
SPG11-206ENST00000558093 OSBPP22059 807 aa8.34□□□□□ -1.07
SPG11-206ENST00000558093 C6orf132Q5T0Z8 1188 aa8.34□□□□□ -1.07
SPG11-206ENST00000558093 PPP1R3GB7ZBB8 358 aa8.33□□□□□ -1.08
SPG11-206ENST00000558093 TSR1Q2NL82 804 aaKnown RBP8.33□□□□□ -1.08
SPG11-206ENST00000558093 DMRTA1Q5VZB9 504 aa8.32□□□□□ -1.08
SPG11-206ENST00000558093 NUTM2FA1L443 756 aa8.31□□□□□ -1.08
SPG11-206ENST00000558093 PRIM1P49642 420 aaKnown RBP8.31□□□□□ -1.08
SPG11-206ENST00000558093 CDHR5Q9HBB8 845 aa8.3□□□□□ -1.08
SPG11-206ENST00000558093 COL9A1P20849 921 aa8.29□□□□□ -1.08
SPG11-206ENST00000558093 CERKQ8TCT0 537 aa8.29□□□□□ -1.08
SPG11-206ENST00000558093 RBM26Q5T8P6 1007 aaKnown RBP8.28□□□□□ -1.08
SPG11-206ENST00000558093 ADGRD1Q6QNK2 874 aa8.28□□□□□ -1.08
SPG11-206ENST00000558093 BCANQ96GW7 911 aa8.28□□□□□ -1.08
SPG11-206ENST00000558093 STAC3Q96MF2 364 aa8.28□□□□□ -1.08
SPG11-206ENST00000558093 TK2O00142 265 aa8.27□□□□□ -1.09
SPG11-206ENST00000558093 ZBED2Q9BTP6 218 aa8.27□□□□□ -1.09
SPG11-206ENST00000558093 PROX2Q3B8N5 592 aa8.26□□□□□ -1.09
SPG11-206ENST00000558093 GPIHBP1Q8IV16 184 aa8.26□□□□□ -1.09
SPG11-206ENST00000558093 VPS9D1Q9Y2B5 631 aa8.26□□□□□ -1.09
SPG11-206ENST00000558093 SLC4A5Q9BY07 1137 aa8.25□□□□□ -1.09
SPG11-206ENST00000558093 FCHSD2O94868 740 aa8.24□□□□□ -1.09
SPG11-206ENST00000558093 NBPF3Q9H094 633 aa8.24□□□□□ -1.09
SPG11-206ENST00000558093 TRIM6-TRIM34B2RNG4 842 aa8.23□□□□□ -1.09
SPG11-206ENST00000558093 CDCA7LQ96GN5 454 aa8.23□□□□□ -1.09
SPG11-206ENST00000558093 PRSS12P56730 875 aa8.22□□□□□ -1.09
SPG11-206ENST00000558093 PTGDRQ13258 359 aa8.22□□□□□ -1.09
SPG11-206ENST00000558093 LMOD2Q6P5Q4 547 aa8.22□□□□□ -1.09
SPG11-206ENST00000558093 PADI6Q6TGC4 694 aa8.21□□□□□ -1.1
SPG11-206ENST00000558093 PACS2Q86VP3 889 aa8.21□□□□□ -1.1
SPG11-206ENST00000558093 SPNS2Q8IVW8 549 aa8.21□□□□□ -1.1
SPG11-206ENST00000558093 RBM27Q9P2N5 1060 aaKnown RBP8.21□□□□□ -1.1
SPG11-206ENST00000558093 RABGEF1Q9UJ41 708 aa8.21□□□□□ -1.1
SPG11-206ENST00000558093 GOLGA8CPA6NN73 597 aa8.2□□□□□ -1.1
SPG11-206ENST00000558093 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.2□□□□□ -1.1
SPG11-206ENST00000558093 MRPL50Q8N5N7 158 aaKnown RBP8.2□□□□□ -1.1
SPG11-206ENST00000558093 NPDC1Q9NQX5 325 aaPredicted RBP8.2□□□□□ -1.1
SPG11-206ENST00000558093 PLSCR2Q9NRY7 297 aa8.2□□□□□ -1.1
SPG11-206ENST00000558093 KIAA1468Q9P260 1216 aa8.2□□□□□ -1.1
SPG11-206ENST00000558093 MYT1LQ9UL68 1186 aa8.2□□□□□ -1.1
SPG11-206ENST00000558093 NBPF26B4DH59 902 aa8.19□□□□□ -1.1
SPG11-206ENST00000558093 ONECUT3O60422 494 aaPredicted RBP8.19□□□□□ -1.1
SPG11-206ENST00000558093 HIC1Q14526 733 aa8.19□□□□□ -1.1
SPG11-206ENST00000558093 TSKSQ9UJT2 592 aa8.19□□□□□ -1.1
SPG11-206ENST00000558093 HRO43593 1189 aa8.18□□□□□ -1.1
SPG11-206ENST00000558093 SEPT9Q9UHD8 586 aaPredicted RBP8.18□□□□□ -1.1
SPG11-206ENST00000558093 GNPATO15228 680 aa8.17□□□□□ -1.1
SPG11-206ENST00000558093 PNMA3Q9UL41 463 aa8.17□□□□□ -1.1
SPG11-206ENST00000558093 RNF166Q96A37 237 aaPredicted RBP8.16□□□□□ -1.1
SPG11-206ENST00000558093 GPR37O15354 613 aa8.15□□□□□ -1.1
SPG11-206ENST00000558093 FAM198AQ9UFP1 575 aa8.15□□□□□ -1.1
SPG11-206ENST00000558093 BHMG1C9JSJ3 638 aaPredicted RBP8.14□□□□□ -1.11
SPG11-206ENST00000558093 SMAPO00193 183 aa8.14□□□□□ -1.11
SPG11-206ENST00000558093 MMRN1Q13201 1228 aa8.14□□□□□ -1.11
SPG11-206ENST00000558093 NUDT18Q6ZVK8 323 aa8.14□□□□□ -1.11
SPG11-206ENST00000558093 LAPTM4BQ86VI4 370 aa8.14□□□□□ -1.11
SPG11-206ENST00000558093 TATDN2Q93075 761 aa8.14□□□□□ -1.11
SPG11-206ENST00000558093 FAM98CQ17RN3 349 aaKnown RBP8.13□□□□□ -1.11
SPG11-206ENST00000558093 KCTD12Q96CX2 325 aaKnown RBP8.13□□□□□ -1.11
SPG11-206ENST00000558093 TTC13Q8NBP0 860 aa8.12□□□□□ -1.11
SPG11-206ENST00000558093 ANKK1Q8NFD2 765 aa8.12□□□□□ -1.11
SPG11-206ENST00000558093 RBM46Q8TBY0 533 aaKnown RBP8.12□□□□□ -1.11
SPG11-206ENST00000558093 WNT2BQ93097 391 aa8.12□□□□□ -1.11
SPG11-206ENST00000558093 FECHP22830 423 aa8.1□□□□□ -1.11
SPG11-206ENST00000558093 FAM161AQ3B820 660 aa8.1□□□□□ -1.11
SPG11-206ENST00000558093 ZFRQ96KR1 1074 aaKnown RBP8.1□□□□□ -1.11
SPG11-206ENST00000558093 ADGRG1Q9Y653 693 aa8.1□□□□□ -1.11
SPG11-206ENST00000558093 C3orf80F5H4A9 247 aa8.09□□□□□ -1.11
SPG11-206ENST00000558093 HDGFP51858 240 aaKnown RBP8.09□□□□□ -1.11
SPG11-206ENST00000558093 ZC3H15Q8WU90 426 aaKnown RBP8.09□□□□□ -1.11
SPG11-206ENST00000558093 RNF40O75150 1001 aa8.08□□□□□ -1.12
SPG11-206ENST00000558093 OATP04181 439 aa8.08□□□□□ -1.12
SPG11-206ENST00000558093 MAP2K5Q13163 448 aa8.08□□□□□ -1.12
SPG11-206ENST00000558093 KRI1Q8N9T8 703 aaKnown RBP8.08□□□□□ -1.12
SPG11-206ENST00000558093 LRCH3Q96II8 777 aa8.08□□□□□ -1.12
SPG11-206ENST00000558093 SLC4A3P48751 1232 aa8.07□□□□□ -1.12
SPG11-206ENST00000558093 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.07□□□□□ -1.12
SPG11-206ENST00000558093 DNAJB2P25686 324 aa8.06□□□□□ -1.12
SPG11-206ENST00000558093 THSD4Q6ZMP0 1018 aa8.06□□□□□ -1.12
SPG11-206ENST00000558093 EYA1Q99502 592 aa8.06□□□□□ -1.12
SPG11-206ENST00000558093 BCAMP50895 628 aa8.05□□□□□ -1.12
SPG11-206ENST00000558093 PTPN5P54829 565 aa8.05□□□□□ -1.12
SPG11-206ENST00000558093 SAMD7Q7Z3H4 446 aa8.05□□□□□ -1.12
SPG11-206ENST00000558093 METTL3Q86U44 580 aaKnown RBP8.05□□□□□ -1.12
SPG11-206ENST00000558093 MINK1Q8N4C8 1332 aaPredicted RBP8.04□□□□□ -1.12
SPG11-206ENST00000558093 RCCD1A6NED2 376 aa8.04□□□□□ -1.12
SPG11-206ENST00000558093 SOWAHBA6NEL2 793 aa8.04□□□□□ -1.12
SPG11-206ENST00000558093 PXYLP1Q8TE99 480 aa8.04□□□□□ -1.12
SPG11-206ENST00000558093 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.03□□□□□ -1.12
SPG11-206ENST00000558093 ZMYND10O75800 440 aa8.03□□□□□ -1.12
SPG11-206ENST00000558093 SWT1Q5T5J6 900 aaKnown RBP8.03□□□□□ -1.12
SPG11-206ENST00000558093 BARGINQ6ZT62 677 aa8.03□□□□□ -1.12
SPG11-206ENST00000558093 CCDC102AQ96A19 550 aa8.03□□□□□ -1.12
SPG11-206ENST00000558093 HCSTQ9UBK5 93 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms