RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MLH3Q9UHC1 1453 aa24.01■■□□□ 1.43
LDLR-206ENST00000557958 ERBINQ96RT1 1412 aa24■■□□□ 1.43
LDLR-206ENST00000557958 HECW2Q9P2P5 1572 aa24■■□□□ 1.43
LDLR-206ENST00000557958 DHX29Q7Z478 1369 aaKnown RBP23.99■■□□□ 1.43
LDLR-206ENST00000557958 RICTORQ6R327 1708 aa23.98■■□□□ 1.43
LDLR-206ENST00000557958 PKD2Q13563 968 aa23.98■■□□□ 1.43
LDLR-206ENST00000557958 COL17A1Q9UMD9 1497 aaPredicted RBP23.96■■□□□ 1.43
LDLR-206ENST00000557958 A2MP01023 1474 aa23.95■■□□□ 1.42
LDLR-206ENST00000557958 YEATS2Q9ULM3 1422 aa23.95■■□□□ 1.42
LDLR-206ENST00000557958 UNC13BO14795 1591 aa23.95■■□□□ 1.42
LDLR-206ENST00000557958 FRMPD1Q5SYB0 1578 aa23.95■■□□□ 1.42
LDLR-206ENST00000557958 FAM135AQ9P2D6 1515 aa23.92■■□□□ 1.42
LDLR-206ENST00000557958 GGT6Q6P531 493 aa23.92■■□□□ 1.42
LDLR-206ENST00000557958 ABCA6Q8N139 1617 aa23.91■■□□□ 1.42
LDLR-206ENST00000557958 L3MBTL2Q969R5 705 aa23.9■■□□□ 1.42
LDLR-206ENST00000557958 DIP2CQ9Y2E4 1556 aa23.86■■□□□ 1.41
LDLR-206ENST00000557958 KANK1Q14678 1352 aa23.86■■□□□ 1.41
LDLR-206ENST00000557958 MAGI2Q86UL8 1455 aa23.85■■□□□ 1.41
LDLR-206ENST00000557958 ZMYM4Q5VZL5 1548 aa23.84■■□□□ 1.41
LDLR-206ENST00000557958 IQGAP3Q86VI3 1631 aa23.84■■□□□ 1.41
LDLR-206ENST00000557958 MIER1Q8N108 512 aa23.83■■□□□ 1.4
LDLR-206ENST00000557958 ATP10AO60312 1499 aa23.82■■□□□ 1.4
LDLR-206ENST00000557958 EIF2AK4Q9P2K8 1649 aaKnown RBP23.8■■□□□ 1.4
LDLR-206ENST00000557958 MLECQ14165 292 aa23.78■■□□□ 1.4
LDLR-206ENST00000557958 WASHC2CQ9Y4E1 1318 aa23.77■■□□□ 1.4
LDLR-206ENST00000557958 ARID4BQ4LE39 1312 aaPredicted RBP23.75■■□□□ 1.39
LDLR-206ENST00000557958 EIF4G2P78344 907 aaKnown RBP eCLIP23.75■■□□□ 1.39
LDLR-206ENST00000557958 DEPDC5O75140 1603 aa23.74■■□□□ 1.39
LDLR-206ENST00000557958 CCDC144AA2RUR9 1427 aa23.74■■□□□ 1.39
LDLR-206ENST00000557958 MROH1Q8NDA8 1641 aa23.72■■□□□ 1.39
LDLR-206ENST00000557958 PRDM15P57071 1507 aaPredicted RBP23.71■■□□□ 1.39
LDLR-206ENST00000557958 ARHGEF40Q8TER5 1519 aa23.68■■□□□ 1.38
LDLR-206ENST00000557958 CENPBP07199 599 aaPredicted RBP23.68■■□□□ 1.38
LDLR-206ENST00000557958 RNF17Q9BXT8 1623 aaKnown RBP23.68■■□□□ 1.38
LDLR-206ENST00000557958 NBPF8Q3BBV2 869 aa23.68■■□□□ 1.38
LDLR-206ENST00000557958 HIRIP3Q9BW71 556 aaPredicted RBP23.68■■□□□ 1.38
LDLR-206ENST00000557958 UHRF1BP1Q6BDS2 1440 aa23.67■■□□□ 1.38
LDLR-206ENST00000557958 HSPA5P11021 654 aaKnown RBP23.67■■□□□ 1.38
LDLR-206ENST00000557958 VWDEQ8N2E2 1590 aa23.67■■□□□ 1.38
LDLR-206ENST00000557958 DDX10Q13206 875 aaKnown RBP23.66■■□□□ 1.38
LDLR-206ENST00000557958 CEP152O94986 1710 aa23.64■■□□□ 1.38
LDLR-206ENST00000557958 TET3O43151 1660 aa23.63■■□□□ 1.37
LDLR-206ENST00000557958 BCORL1Q5H9F3 1711 aa23.63■■□□□ 1.37
LDLR-206ENST00000557958 E9PCH4 1651 aa23.63■■□□□ 1.37
LDLR-206ENST00000557958 SCAF1Q9H7N4 1312 aaKnown RBP23.63■■□□□ 1.37
LDLR-206ENST00000557958 PLA2R1Q13018 1463 aa23.62■■□□□ 1.37
LDLR-206ENST00000557958 ESF1Q9H501 851 aaKnown RBP23.62■■□□□ 1.37
LDLR-206ENST00000557958 RGL3Q3MIN7 710 aa23.62■■□□□ 1.37
LDLR-206ENST00000557958 REREQ9P2R6 1566 aa23.61■■□□□ 1.37
LDLR-206ENST00000557958 SIGLEC1Q9BZZ2 1709 aa23.61■■□□□ 1.37
LDLR-206ENST00000557958 ABCC3O15438 1527 aa23.6■■□□□ 1.37
LDLR-206ENST00000557958 AGLP35573 1532 aa23.6■■□□□ 1.37
LDLR-206ENST00000557958 RALGAPBQ86X10 1494 aa23.59■■□□□ 1.37
LDLR-206ENST00000557958 ZNF326Q5BKZ1 582 aaKnown RBP23.59■■□□□ 1.37
LDLR-206ENST00000557958 LMTK2Q8IWU2 1503 aa23.58■■□□□ 1.36
LDLR-206ENST00000557958 EFCAB6Q5THR3 1501 aa23.57■■□□□ 1.36
LDLR-206ENST00000557958 DCAF11Q8TEB1 546 aa23.57■■□□□ 1.36
LDLR-206ENST00000557958 KDM2AQ9Y2K7 1162 aa23.57■■□□□ 1.36
LDLR-206ENST00000557958 NPATQ14207 1427 aa23.55■■□□□ 1.36
LDLR-206ENST00000557958 SPATA31E1Q6ZUB1 1445 aa23.55■■□□□ 1.36
LDLR-206ENST00000557958 TRPM2O94759 1503 aa23.55■■□□□ 1.36
LDLR-206ENST00000557958 PPP6R1Q9UPN7 881 aa23.54■■□□□ 1.36
LDLR-206ENST00000557958 CFAP65Q6ZU64 1925 aaKnown RBP23.53■■□□□ 1.36
LDLR-206ENST00000557958 CHGAP10645 457 aaKnown RBP23.53■■□□□ 1.36
LDLR-206ENST00000557958 PELP1Q8IZL8 1130 aaKnown RBP23.53■■□□□ 1.36
LDLR-206ENST00000557958 PTPRTO14522 1441 aa23.53■■□□□ 1.36
LDLR-206ENST00000557958 CAMSAP1Q5T5Y3 1602 aa23.52■■□□□ 1.36
LDLR-206ENST00000557958 USP47Q96K76 1375 aa23.51■■□□□ 1.35
LDLR-206ENST00000557958 SPHKAPQ2M3C7 1700 aa23.51■■□□□ 1.35
LDLR-206ENST00000557958 ANP32CO43423 234 aa23.51■■□□□ 1.35
LDLR-206ENST00000557958 FBXO31Q5XUX0 539 aaPredicted RBP23.5■■□□□ 1.35
LDLR-206ENST00000557958 WASHC2AQ641Q2 1341 aa23.5■■□□□ 1.35
LDLR-206ENST00000557958 PLPPR3Q6T4P5 718 aa23.49■■□□□ 1.35
LDLR-206ENST00000557958 YTHDC1Q96MU7 727 aaKnown RBP23.49■■□□□ 1.35
LDLR-206ENST00000557958 PRAG1Q86YV5 1406 aa23.49■■□□□ 1.35
LDLR-206ENST00000557958 ZC3H13Q5T200 1668 aaKnown RBP23.48■■□□□ 1.35
LDLR-206ENST00000557958 CARD11Q9BXL7 1154 aa23.47■■□□□ 1.35
LDLR-206ENST00000557958 UGGT1Q9NYU2 1555 aa23.47■■□□□ 1.35
LDLR-206ENST00000557958 CLTCQ00610 1675 aaKnown RBP23.47■■□□□ 1.35
LDLR-206ENST00000557958 STAC3Q96MF2 364 aa23.47■■□□□ 1.35
LDLR-206ENST00000557958 CCDC7Q96M83 1385 aa23.46■■□□□ 1.35
LDLR-206ENST00000557958 POLR1AO95602 1720 aaPredicted RBP23.45■■□□□ 1.34
LDLR-206ENST00000557958 ROCK2O75116 1388 aaKnown RBP23.45■■□□□ 1.34
LDLR-206ENST00000557958 CLTCL1P53675 1640 aa23.44■■□□□ 1.34
LDLR-206ENST00000557958 ARHGAP31Q2M1Z3 1444 aa23.44■■□□□ 1.34
LDLR-206ENST00000557958 ZMYM3Q14202 1370 aa23.42■■□□□ 1.34
LDLR-206ENST00000557958 NEURL4Q96JN8 1562 aa23.42■■□□□ 1.34
LDLR-206ENST00000557958 CNTLNQ9NXG0 1405 aa23.42■■□□□ 1.34
LDLR-206ENST00000557958 TRPM1Q7Z4N2 1603 aa23.42■■□□□ 1.34
LDLR-206ENST00000557958 CCER2I3L3R5 266 aa23.41■■□□□ 1.34
LDLR-206ENST00000557958 NOS1P29475 1434 aa23.39■■□□□ 1.34
LDLR-206ENST00000557958 IDI1Q13907 227 aa23.39■■□□□ 1.34
LDLR-206ENST00000557958 CEBPAP49715 358 aaPredicted RBP23.39■■□□□ 1.33
LDLR-206ENST00000557958 GPRASP1Q5JY77 1395 aa23.38■■□□□ 1.33
LDLR-206ENST00000557958 LAMC1P11047 1609 aa23.38■■□□□ 1.33
LDLR-206ENST00000557958 KIF7Q2M1P5 1343 aa23.37■■□□□ 1.33
LDLR-206ENST00000557958 SLC52A1Q9NWF4 448 aa23.36■■□□□ 1.33
LDLR-206ENST00000557958 STAG3Q9UJ98 1225 aa23.36■■□□□ 1.33
LDLR-206ENST00000557958 C11orf95C9JLR9 678 aaPredicted RBP23.34■■□□□ 1.33
LDLR-206ENST00000557958 ERVK-7P63135 1459 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms