RNA–Protein interactions for RNA: ENST00000557566.1

SPTLC2-206, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 2

Gene SPTLC2, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-206ENST00000557566 ABCA6Q8N139 1617 aa11.53□□□□□ -0.56
SPTLC2-206ENST00000557566 NPATQ14207 1427 aa11.53□□□□□ -0.56
SPTLC2-206ENST00000557566 PLA2R1Q13018 1463 aa11.53□□□□□ -0.56
SPTLC2-206ENST00000557566 C19orf67A6NJJ6 358 aa11.53□□□□□ -0.56
SPTLC2-206ENST00000557566 PKD2Q13563 968 aa11.53□□□□□ -0.56
SPTLC2-206ENST00000557566 SPDYE1Q8NFV5 336 aaPredicted RBP11.53□□□□□ -0.56
SPTLC2-206ENST00000557566 MROH2AA6NES4 1674 aa11.52□□□□□ -0.56
SPTLC2-206ENST00000557566 ZNF142P52746 1687 aaPredicted RBP11.52□□□□□ -0.56
SPTLC2-206ENST00000557566 TOM1O60784 492 aa11.52□□□□□ -0.57
SPTLC2-206ENST00000557566 AMER1Q5JTC6 1135 aaPredicted RBP11.52□□□□□ -0.57
SPTLC2-206ENST00000557566 FBXO3Q9UK99 471 aa11.52□□□□□ -0.57
SPTLC2-206ENST00000557566 GABBR2O75899 941 aa11.5□□□□□ -0.57
SPTLC2-206ENST00000557566 LHX8Q68G74 356 aa11.5□□□□□ -0.57
SPTLC2-206ENST00000557566 AFAP1Q8N556 730 aa11.5□□□□□ -0.57
SPTLC2-206ENST00000557566 TCOF1Q13428 1488 aaKnown RBP11.5□□□□□ -0.57
SPTLC2-206ENST00000557566 MLH3Q9UHC1 1453 aa11.5□□□□□ -0.57
SPTLC2-206ENST00000557566 CDK13Q14004 1512 aaKnown RBP11.5□□□□□ -0.57
SPTLC2-206ENST00000557566 MYO3AQ8NEV4 1616 aa11.49□□□□□ -0.57
SPTLC2-206ENST00000557566 CPS1P31327 1500 aa11.49□□□□□ -0.57
SPTLC2-206ENST00000557566 ARHGAP5Q13017 1502 aa11.49□□□□□ -0.57
SPTLC2-206ENST00000557566 CEP170BQ9Y4F5 1589 aaPredicted RBP11.48□□□□□ -0.57
SPTLC2-206ENST00000557566 KIF14Q15058 1648 aa11.46□□□□□ -0.57
SPTLC2-206ENST00000557566 RANGAP1P46060 587 aaPredicted RBP11.46□□□□□ -0.57
SPTLC2-206ENST00000557566 PTPRKQ15262 1439 aa11.45□□□□□ -0.58
SPTLC2-206ENST00000557566 ZMYM3Q14202 1370 aa11.45□□□□□ -0.58
SPTLC2-206ENST00000557566 RTN4Q9NQC3 1192 aaKnown RBP11.44□□□□□ -0.58
SPTLC2-206ENST00000557566 KIDINS220Q9ULH0 1771 aa11.44□□□□□ -0.58
SPTLC2-206ENST00000557566 POLR1AO95602 1720 aaPredicted RBP11.43□□□□□ -0.58
SPTLC2-206ENST00000557566 CDC42BPBQ9Y5S2 1711 aa11.43□□□□□ -0.58
SPTLC2-206ENST00000557566 CLTCQ00610 1675 aaKnown RBP11.43□□□□□ -0.58
SPTLC2-206ENST00000557566 ITSN2Q9NZM3 1697 aa11.43□□□□□ -0.58
SPTLC2-206ENST00000557566 CDK11AQ9UQ88 783 aaPredicted RBP11.42□□□□□ -0.58
SPTLC2-206ENST00000557566 SHANK2Q9UPX8 1470 aa11.42□□□□□ -0.58
SPTLC2-206ENST00000557566 ABCC1P33527 1531 aa11.41□□□□□ -0.58
SPTLC2-206ENST00000557566 PLSCR2Q9NRY7 297 aa11.41□□□□□ -0.58
SPTLC2-206ENST00000557566 STAG3Q9UJ98 1225 aa11.41□□□□□ -0.58
SPTLC2-206ENST00000557566 CHADLQ6NUI6 762 aa11.4□□□□□ -0.58
SPTLC2-206ENST00000557566 ALKQ9UM73 1620 aa11.39□□□□□ -0.59
SPTLC2-206ENST00000557566 RGS17Q9UGC6 210 aaPredicted RBP11.39□□□□□ -0.59
SPTLC2-206ENST00000557566 DNMT1P26358 1616 aaKnown RBP11.38□□□□□ -0.59
SPTLC2-206ENST00000557566 A2ML1A8K2U0 1454 aa11.38□□□□□ -0.59
SPTLC2-206ENST00000557566 CLIP1P30622 1438 aa11.38□□□□□ -0.59
SPTLC2-206ENST00000557566 TROQ12816 1431 aaPredicted RBP11.38□□□□□ -0.59
SPTLC2-206ENST00000557566 PREX2Q70Z35 1606 aa11.38□□□□□ -0.59
SPTLC2-206ENST00000557566 NEURL4Q96JN8 1562 aa11.37□□□□□ -0.59
SPTLC2-206ENST00000557566 ATP1B4Q9UN42 357 aaPredicted RBP11.37□□□□□ -0.59
SPTLC2-206ENST00000557566 VWDEQ8N2E2 1590 aa11.36□□□□□ -0.59
SPTLC2-206ENST00000557566 RNF17Q9BXT8 1623 aaKnown RBP11.35□□□□□ -0.59
SPTLC2-206ENST00000557566 PRR29P0C7W0 189 aa11.35□□□□□ -0.59
SPTLC2-206ENST00000557566 SAMD9LQ8IVG5 1584 aa11.34□□□□□ -0.59
SPTLC2-206ENST00000557566 FMN1Q68DA7 1419 aa11.34□□□□□ -0.59
SPTLC2-206ENST00000557566 PLXNC1O60486 1568 aa11.33□□□□□ -0.6
SPTLC2-206ENST00000557566 VASPP50552 380 aaPredicted RBP11.32□□□□□ -0.6
SPTLC2-206ENST00000557566 SYNMO15061 1565 aa11.32□□□□□ -0.6
SPTLC2-206ENST00000557566 SETD1AO15047 1707 aaKnown RBP11.32□□□□□ -0.6
SPTLC2-206ENST00000557566 POTEAQ6S8J7 498 aa11.31□□□□□ -0.6
SPTLC2-206ENST00000557566 CDC42BPAQ5VT25 1732 aa11.31□□□□□ -0.6
SPTLC2-206ENST00000557566 ATP7AQ04656 1500 aa11.3□□□□□ -0.6
SPTLC2-206ENST00000557566 GGT6Q6P531 493 aa11.3□□□□□ -0.6
SPTLC2-206ENST00000557566 ANKLE2Q86XL3 938 aa11.3□□□□□ -0.6
SPTLC2-206ENST00000557566 DEPDC5O75140 1603 aa11.3□□□□□ -0.6
SPTLC2-206ENST00000557566 SPAG9O60271 1321 aaKnown RBP11.3□□□□□ -0.6
SPTLC2-206ENST00000557566 IQGAP1P46940 1657 aa11.3□□□□□ -0.6
SPTLC2-206ENST00000557566 STRCP1A6NGW2 1772 aa11.29□□□□□ -0.6
SPTLC2-206ENST00000557566 MED14O60244 1454 aa11.29□□□□□ -0.6
SPTLC2-206ENST00000557566 A2MP01023 1474 aa11.29□□□□□ -0.6
SPTLC2-206ENST00000557566 LRRC7Q96NW7 1537 aa11.29□□□□□ -0.6
SPTLC2-206ENST00000557566 LRRIQ1Q96JM4 1722 aa11.29□□□□□ -0.6
SPTLC2-206ENST00000557566 NPHP4O75161 1426 aaPredicted RBP11.28□□□□□ -0.6
SPTLC2-206ENST00000557566 SRCAPQ6ZRS2 3230 aa11.28□□□□□ -0.6
SPTLC2-206ENST00000557566 SYCP2Q9BX26 1530 aa11.28□□□□□ -0.6
SPTLC2-206ENST00000557566 INO80Q9ULG1 1556 aaPredicted RBP11.28□□□□□ -0.6
SPTLC2-206ENST00000557566 TNRQ92752 1358 aa11.28□□□□□ -0.6
SPTLC2-206ENST00000557566 PLCD3Q8N3E9 789 aa11.27□□□□□ -0.61
SPTLC2-206ENST00000557566 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.27□□□□□ -0.61
SPTLC2-206ENST00000557566 ADGBQ8N7X0 1667 aa11.27□□□□□ -0.61
SPTLC2-206ENST00000557566 EEA1Q15075 1411 aa11.26□□□□□ -0.61
SPTLC2-206ENST00000557566 PLEKHG5O94827 1062 aa11.25□□□□□ -0.61
SPTLC2-206ENST00000557566 MIER1Q8N108 512 aa11.25□□□□□ -0.61
SPTLC2-206ENST00000557566 THEMISQ8N1K5 641 aaPredicted RBP11.25□□□□□ -0.61
SPTLC2-206ENST00000557566 FAM135AQ9P2D6 1515 aa11.25□□□□□ -0.61
SPTLC2-206ENST00000557566 UGGT1Q9NYU2 1555 aa11.24□□□□□ -0.61
SPTLC2-206ENST00000557566 POTEIP0CG38 1075 aa11.24□□□□□ -0.61
SPTLC2-206ENST00000557566 ZNF777Q9ULD5 760 aaPredicted RBP11.24□□□□□ -0.61
SPTLC2-206ENST00000557566 CD44P16070 742 aaKnown RBP11.23□□□□□ -0.61
SPTLC2-206ENST00000557566 PZPP20742 1482 aa11.23□□□□□ -0.61
SPTLC2-206ENST00000557566 NLRP1Q9C000 1473 aa11.23□□□□□ -0.61
SPTLC2-206ENST00000557566 CCDC18Q5T9S5 1454 aa11.22□□□□□ -0.61
SPTLC2-206ENST00000557566 PLEKHH2Q8IVE3 1493 aa11.21□□□□□ -0.61
SPTLC2-206ENST00000557566 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
SPTLC2-206ENST00000557566 HNRNPMP52272 730 aaKnown RBP eCLIP11.21□□□□□ -0.61
SPTLC2-206ENST00000557566 FBXO31Q5XUX0 539 aaPredicted RBP11.21□□□□□ -0.61
SPTLC2-206ENST00000557566 XIRP1Q702N8 1843 aaKnown RBP11.21□□□□□ -0.62
SPTLC2-206ENST00000557566 FAM135BQ49AJ0 1406 aa11.2□□□□□ -0.62
SPTLC2-206ENST00000557566 KIAA1107Q9UPP5 1409 aa11.2□□□□□ -0.62
SPTLC2-206ENST00000557566 IFNLR1Q8IU57 520 aaPredicted RBP11.2□□□□□ -0.62
SPTLC2-206ENST00000557566 UPF1Q92900 1129 aaKnown RBP eCLIP11.2□□□□□ -0.62
SPTLC2-206ENST00000557566 KDM5DQ9BY66 1539 aa11.19□□□□□ -0.62
SPTLC2-206ENST00000557566 MIA2Q96PC5 1412 aa11.19□□□□□ -0.62
SPTLC2-206ENST00000557566 ZC3H13Q5T200 1668 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms