RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 PTPRTO14522 1441 aa9.7□□□□□ -0.86
VPS33B-207ENST00000557470 TRAPPC8Q9Y2L5 1435 aa9.7□□□□□ -0.86
VPS33B-207ENST00000557470 AGLP35573 1532 aa9.7□□□□□ -0.86
VPS33B-207ENST00000557470 LRRIQ1Q96JM4 1722 aa9.7□□□□□ -0.86
VPS33B-207ENST00000557470 SETD1BQ9UPS6 1966 aaKnown RBP9.7□□□□□ -0.86
VPS33B-207ENST00000557470 SOCS7O14512 581 aa9.69□□□□□ -0.86
VPS33B-207ENST00000557470 ABCC1P33527 1531 aa9.69□□□□□ -0.86
VPS33B-207ENST00000557470 CDC42BPBQ9Y5S2 1711 aa9.69□□□□□ -0.86
VPS33B-207ENST00000557470 PREX2Q70Z35 1606 aa9.68□□□□□ -0.86
VPS33B-207ENST00000557470 LTBP4Q8N2S1 1624 aa9.68□□□□□ -0.86
VPS33B-207ENST00000557470 SPATA31D1Q6ZQQ2 1576 aa9.68□□□□□ -0.86
VPS33B-207ENST00000557470 STAG3Q9UJ98 1225 aa9.68□□□□□ -0.86
VPS33B-207ENST00000557470 NCOA1Q15788 1441 aa9.67□□□□□ -0.86
VPS33B-207ENST00000557470 PROM2Q8N271 834 aa9.67□□□□□ -0.86
VPS33B-207ENST00000557470 ESF1Q9H501 851 aaKnown RBP9.67□□□□□ -0.86
VPS33B-207ENST00000557470 ITSN2Q9NZM3 1697 aa9.67□□□□□ -0.86
VPS33B-207ENST00000557470 CNTLNQ9NXG0 1405 aa9.65□□□□□ -0.86
VPS33B-207ENST00000557470 KIDINS220Q9ULH0 1771 aa9.65□□□□□ -0.86
VPS33B-207ENST00000557470 C19orf67A6NJJ6 358 aa9.65□□□□□ -0.86
VPS33B-207ENST00000557470 IQSEC2Q5JU85 1478 aa9.65□□□□□ -0.87
VPS33B-207ENST00000557470 CREBZFQ9NS37 354 aa9.64□□□□□ -0.87
VPS33B-207ENST00000557470 FARP1Q9Y4F1 1045 aaPredicted RBP9.64□□□□□ -0.87
VPS33B-207ENST00000557470 CCDC18Q5T9S5 1454 aa9.64□□□□□ -0.87
VPS33B-207ENST00000557470 CASKIN1Q8WXD9 1431 aa9.64□□□□□ -0.87
VPS33B-207ENST00000557470 CAMSAP1Q5T5Y3 1602 aa9.64□□□□□ -0.87
VPS33B-207ENST00000557470 SAMD9LQ8IVG5 1584 aa9.63□□□□□ -0.87
VPS33B-207ENST00000557470 CDC42BPAQ5VT25 1732 aa9.63□□□□□ -0.87
VPS33B-207ENST00000557470 NPATQ14207 1427 aa9.63□□□□□ -0.87
VPS33B-207ENST00000557470 ZMYM3Q14202 1370 aa9.62□□□□□ -0.87
VPS33B-207ENST00000557470 SYCP2Q9BX26 1530 aa9.61□□□□□ -0.87
VPS33B-207ENST00000557470 MROH2AA6NES4 1674 aa9.61□□□□□ -0.87
VPS33B-207ENST00000557470 ZNF335Q9H4Z2 1342 aaPredicted RBP9.61□□□□□ -0.87
VPS33B-207ENST00000557470 NCKAP5LQ9HCH0 1330 aa9.61□□□□□ -0.87
VPS33B-207ENST00000557470 ZNF777Q9ULD5 760 aaPredicted RBP9.61□□□□□ -0.87
VPS33B-207ENST00000557470 SUPT6HQ7KZ85 1726 aaKnown RBP9.59□□□□□ -0.87
VPS33B-207ENST00000557470 SPAG9O60271 1321 aaKnown RBP9.59□□□□□ -0.87
VPS33B-207ENST00000557470 PLXNC1O60486 1568 aa9.59□□□□□ -0.87
VPS33B-207ENST00000557470 ATP7AQ04656 1500 aa9.59□□□□□ -0.87
VPS33B-207ENST00000557470 GPATCH8Q9UKJ3 1502 aaKnown RBP9.59□□□□□ -0.87
VPS33B-207ENST00000557470 MYO3AQ8NEV4 1616 aa9.59□□□□□ -0.87
VPS33B-207ENST00000557470 FYCO1Q9BQS8 1478 aa9.59□□□□□ -0.87
VPS33B-207ENST00000557470 ZNF142P52746 1687 aaPredicted RBP9.58□□□□□ -0.88
VPS33B-207ENST00000557470 CLTCQ00610 1675 aaKnown RBP9.58□□□□□ -0.88
VPS33B-207ENST00000557470 PTPRKQ15262 1439 aa9.58□□□□□ -0.88
VPS33B-207ENST00000557470 UBAP1LF5GYI3 381 aa9.58□□□□□ -0.88
VPS33B-207ENST00000557470 HNRNPMP52272 730 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS33B-207ENST00000557470 FKBP8Q14318 412 aa9.58□□□□□ -0.88
VPS33B-207ENST00000557470 PLA2R1Q13018 1463 aa9.58□□□□□ -0.88
VPS33B-207ENST00000557470 TCOF1Q13428 1488 aaKnown RBP9.58□□□□□ -0.88
VPS33B-207ENST00000557470 INO80Q9ULG1 1556 aaPredicted RBP9.58□□□□□ -0.88
VPS33B-207ENST00000557470 CEP170BQ9Y4F5 1589 aaPredicted RBP9.58□□□□□ -0.88
VPS33B-207ENST00000557470 A2MP01023 1474 aa9.57□□□□□ -0.88
VPS33B-207ENST00000557470 KIAA1107Q9UPP5 1409 aa9.56□□□□□ -0.88
VPS33B-207ENST00000557470 PKD2Q13563 968 aa9.56□□□□□ -0.88
VPS33B-207ENST00000557470 PLEKHH2Q8IVE3 1493 aa9.55□□□□□ -0.88
VPS33B-207ENST00000557470 GGT6Q6P531 493 aa9.55□□□□□ -0.88
VPS33B-207ENST00000557470 CFDP1Q9UEE9 299 aaPredicted RBP9.55□□□□□ -0.88
VPS33B-207ENST00000557470 CCNB3Q8WWL7 1395 aa9.54□□□□□ -0.88
VPS33B-207ENST00000557470 CD44P16070 742 aaKnown RBP9.54□□□□□ -0.88
VPS33B-207ENST00000557470 A2ML1A8K2U0 1454 aa9.53□□□□□ -0.88
VPS33B-207ENST00000557470 DNMT1P26358 1616 aaKnown RBP9.52□□□□□ -0.89
VPS33B-207ENST00000557470 ZNF644Q9H582 1327 aaPredicted RBP9.52□□□□□ -0.89
VPS33B-207ENST00000557470 ADGBQ8N7X0 1667 aa9.51□□□□□ -0.89
VPS33B-207ENST00000557470 MNX1P50219 401 aaPredicted RBP9.51□□□□□ -0.89
VPS33B-207ENST00000557470 MTUS2Q5JR59 1369 aa9.5□□□□□ -0.89
VPS33B-207ENST00000557470 HSPA1LP34931 641 aa9.5□□□□□ -0.89
VPS33B-207ENST00000557470 MBD5Q9P267 1494 aa9.5□□□□□ -0.89
VPS33B-207ENST00000557470 TIAM1Q13009 1591 aa9.5□□□□□ -0.89
VPS33B-207ENST00000557470 NEURL4Q96JN8 1562 aa9.5□□□□□ -0.89
VPS33B-207ENST00000557470 PIP4K2BP78356 416 aa9.49□□□□□ -0.89
VPS33B-207ENST00000557470 FBXO31Q5XUX0 539 aaPredicted RBP9.49□□□□□ -0.89
VPS33B-207ENST00000557470 MED1Q15648 1581 aaPredicted RBP9.49□□□□□ -0.89
VPS33B-207ENST00000557470 DHX29Q7Z478 1369 aaKnown RBP9.49□□□□□ -0.89
VPS33B-207ENST00000557470 TNRQ92752 1358 aa9.49□□□□□ -0.89
VPS33B-207ENST00000557470 RTEL1-TNFRSF6BF6WH68 1400 aa9.48□□□□□ -0.89
VPS33B-207ENST00000557470 CPS1P31327 1500 aa9.48□□□□□ -0.89
VPS33B-207ENST00000557470 GABBR2O75899 941 aa9.48□□□□□ -0.89
VPS33B-207ENST00000557470 POLR1AO95602 1720 aaPredicted RBP9.48□□□□□ -0.89
VPS33B-207ENST00000557470 PZPP20742 1482 aa9.47□□□□□ -0.89
VPS33B-207ENST00000557470 SHANK2Q9UPX8 1470 aa9.47□□□□□ -0.89
VPS33B-207ENST00000557470 EHBP1L1Q8N3D4 1523 aa9.46□□□□□ -0.89
VPS33B-207ENST00000557470 KDM5DQ9BY66 1539 aa9.46□□□□□ -0.89
VPS33B-207ENST00000557470 KIF3BO15066 747 aa9.46□□□□□ -0.9
VPS33B-207ENST00000557470 TOM1O60784 492 aa9.46□□□□□ -0.9
VPS33B-207ENST00000557470 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS33B-207ENST00000557470 VWDEQ8N2E2 1590 aa9.46□□□□□ -0.9
VPS33B-207ENST00000557470 CEP162Q5TB80 1403 aa9.45□□□□□ -0.9
VPS33B-207ENST00000557470 FAM135AQ9P2D6 1515 aa9.45□□□□□ -0.9
VPS33B-207ENST00000557470 ALKQ9UM73 1620 aa9.45□□□□□ -0.9
VPS33B-207ENST00000557470 ANKLE2Q86XL3 938 aa9.44□□□□□ -0.9
VPS33B-207ENST00000557470 WASHC2CQ9Y4E1 1318 aa9.44□□□□□ -0.9
VPS33B-207ENST00000557470 CCDC141Q6ZP82 1450 aa9.44□□□□□ -0.9
VPS33B-207ENST00000557470 UGGT1Q9NYU2 1555 aa9.43□□□□□ -0.9
VPS33B-207ENST00000557470 MED14O60244 1454 aa9.43□□□□□ -0.9
VPS33B-207ENST00000557470 CAMSAP2Q08AD1 1489 aa9.43□□□□□ -0.9
VPS33B-207ENST00000557470 NLRP1Q9C000 1473 aa9.43□□□□□ -0.9
VPS33B-207ENST00000557470 NPHP4O75161 1426 aaPredicted RBP9.43□□□□□ -0.9
VPS33B-207ENST00000557470 MIA2Q96PC5 1412 aa9.43□□□□□ -0.9
VPS33B-207ENST00000557470 ZRANB1Q9UGI0 708 aa9.43□□□□□ -0.9
VPS33B-207ENST00000557470 DEPDC5O75140 1603 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms