RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 LTBP4Q8N2S1 1624 aa17.3■□□□□ 0.36
SYNE2-227ENST00000557307 POLR1AO95602 1720 aaPredicted RBP17.3■□□□□ 0.36
SYNE2-227ENST00000557307 MIA2Q96PC5 1412 aa17.3■□□□□ 0.36
SYNE2-227ENST00000557307 KIF3BO15066 747 aa17.29■□□□□ 0.36
SYNE2-227ENST00000557307 ZC3H13Q5T200 1668 aaKnown RBP17.29■□□□□ 0.36
SYNE2-227ENST00000557307 PTPRTO14522 1441 aa17.29■□□□□ 0.36
SYNE2-227ENST00000557307 CERKQ8TCT0 537 aa17.28■□□□□ 0.36
SYNE2-227ENST00000557307 FAM135AQ9P2D6 1515 aa17.27■□□□□ 0.36
SYNE2-227ENST00000557307 PZPP20742 1482 aa17.27■□□□□ 0.36
SYNE2-227ENST00000557307 ABCC3O15438 1527 aa17.26■□□□□ 0.35
SYNE2-227ENST00000557307 CFAP65Q6ZU64 1925 aaKnown RBP17.26■□□□□ 0.35
SYNE2-227ENST00000557307 FBXO31Q5XUX0 539 aaPredicted RBP17.26■□□□□ 0.35
SYNE2-227ENST00000557307 TCOF1Q13428 1488 aaKnown RBP17.25■□□□□ 0.35
SYNE2-227ENST00000557307 NEURL4Q96JN8 1562 aa17.25■□□□□ 0.35
SYNE2-227ENST00000557307 ABCC5O15440 1437 aa17.25■□□□□ 0.35
SYNE2-227ENST00000557307 A2ML1A8K2U0 1454 aa17.24■□□□□ 0.35
SYNE2-227ENST00000557307 NCKAP5LQ9HCH0 1330 aa17.24■□□□□ 0.35
SYNE2-227ENST00000557307 RSPH4AQ5TD94 716 aa17.24■□□□□ 0.35
SYNE2-227ENST00000557307 PLA2R1Q13018 1463 aa17.24■□□□□ 0.35
SYNE2-227ENST00000557307 FGD6Q6ZV73 1430 aa17.23■□□□□ 0.35
SYNE2-227ENST00000557307 SHANK2Q9UPX8 1470 aa17.23■□□□□ 0.35
SYNE2-227ENST00000557307 TSPY4P0CV99 314 aa17.22■□□□□ 0.35
SYNE2-227ENST00000557307 TSPY10P0CW01 314 aa17.22■□□□□ 0.35
SYNE2-227ENST00000557307 DAPK1P53355 1430 aa17.21■□□□□ 0.35
SYNE2-227ENST00000557307 DUOX2Q9NRD8 1548 aa17.21■□□□□ 0.35
SYNE2-227ENST00000557307 DEPDC5O75140 1603 aa17.21■□□□□ 0.35
SYNE2-227ENST00000557307 PPP6R1Q9UPN7 881 aa17.21■□□□□ 0.35
SYNE2-227ENST00000557307 PRDM15P57071 1507 aaPredicted RBP17.21■□□□□ 0.34
SYNE2-227ENST00000557307 SPATA31D1Q6ZQQ2 1576 aa17.2■□□□□ 0.34
SYNE2-227ENST00000557307 TNRQ92752 1358 aa17.2■□□□□ 0.34
SYNE2-227ENST00000557307 DMRT2Q9Y5R5 561 aa17.19■□□□□ 0.34
SYNE2-227ENST00000557307 WASHC2CQ9Y4E1 1318 aa17.19■□□□□ 0.34
SYNE2-227ENST00000557307 ERVK-7P63135 1459 aa17.17■□□□□ 0.34
SYNE2-227ENST00000557307 ZNF335Q9H4Z2 1342 aaPredicted RBP17.17■□□□□ 0.34
SYNE2-227ENST00000557307 KIF15Q9NS87 1388 aa17.16■□□□□ 0.34
SYNE2-227ENST00000557307 UBR1Q8IWV7 1749 aa17.16■□□□□ 0.34
SYNE2-227ENST00000557307 UGGT1Q9NYU2 1555 aa17.15■□□□□ 0.34
SYNE2-227ENST00000557307 ERBINQ96RT1 1412 aa17.13■□□□□ 0.33
SYNE2-227ENST00000557307 APLP2Q06481 763 aa17.13■□□□□ 0.33
SYNE2-227ENST00000557307 STRCP1A6NGW2 1772 aa17.12■□□□□ 0.33
SYNE2-227ENST00000557307 NLRP1Q9C000 1473 aa17.12■□□□□ 0.33
SYNE2-227ENST00000557307 RRP7BPQ9NSQ0 103 aa17.12■□□□□ 0.33
SYNE2-227ENST00000557307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.12■□□□□ 0.33
SYNE2-227ENST00000557307 VWDEQ8N2E2 1590 aa17.11■□□□□ 0.33
SYNE2-227ENST00000557307 CHIC2Q9UKJ5 165 aa17.11■□□□□ 0.33
SYNE2-227ENST00000557307 PIK3C2BO00750 1634 aa17.1■□□□□ 0.33
SYNE2-227ENST00000557307 IQGAP1P46940 1657 aa17.1■□□□□ 0.33
SYNE2-227ENST00000557307 PKD2Q13563 968 aa17.09■□□□□ 0.33
SYNE2-227ENST00000557307 ADGRL2O95490 1459 aa17.09■□□□□ 0.33
SYNE2-227ENST00000557307 IQSEC2Q5JU85 1478 aa17.09■□□□□ 0.33
SYNE2-227ENST00000557307 SYNMO15061 1565 aa17.07■□□□□ 0.32
SYNE2-227ENST00000557307 EFCAB6Q5THR3 1501 aa17.05■□□□□ 0.32
SYNE2-227ENST00000557307 LMTK2Q8IWU2 1503 aa17.05■□□□□ 0.32
SYNE2-227ENST00000557307 MED14O60244 1454 aa17.05■□□□□ 0.32
SYNE2-227ENST00000557307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.32
SYNE2-227ENST00000557307 MYO5BQ9ULV0 1848 aa17.04■□□□□ 0.32
SYNE2-227ENST00000557307 ARHGAP31Q2M1Z3 1444 aa17.04■□□□□ 0.32
SYNE2-227ENST00000557307 ANKRD30AQ9BXX3 1397 aa17.03■□□□□ 0.32
SYNE2-227ENST00000557307 NPHP4O75161 1426 aaPredicted RBP17.03■□□□□ 0.32
SYNE2-227ENST00000557307 FAM50AQ14320 339 aaKnown RBP17.02■□□□□ 0.32
SYNE2-227ENST00000557307 ALKQ9UM73 1620 aa17.02■□□□□ 0.31
SYNE2-227ENST00000557307 UNC13BO14795 1591 aa17.02■□□□□ 0.31
SYNE2-227ENST00000557307 PPARGC1BQ86YN6 1023 aaKnown RBP17.01■□□□□ 0.31
SYNE2-227ENST00000557307 XIRP1Q702N8 1843 aaKnown RBP17■□□□□ 0.31
SYNE2-227ENST00000557307 SLIT1O75093 1534 aa17■□□□□ 0.31
SYNE2-227ENST00000557307 ARHGAP23Q9P227 1491 aa16.99■□□□□ 0.31
SYNE2-227ENST00000557307 TET3O43151 1660 aa16.99■□□□□ 0.31
SYNE2-227ENST00000557307 GCC2Q8IWJ2 1684 aa16.99■□□□□ 0.31
SYNE2-227ENST00000557307 KDM5AP29375 1690 aaKnown RBP16.98■□□□□ 0.31
SYNE2-227ENST00000557307 CPS1P31327 1500 aa16.98■□□□□ 0.31
SYNE2-227ENST00000557307 THEMISQ8N1K5 641 aaPredicted RBP16.98■□□□□ 0.31
SYNE2-227ENST00000557307 E9PCH4 1651 aa16.97■□□□□ 0.31
SYNE2-227ENST00000557307 ANKLE2Q86XL3 938 aa16.97■□□□□ 0.31
SYNE2-227ENST00000557307 ANKRD50Q9ULJ7 1429 aa16.96■□□□□ 0.31
SYNE2-227ENST00000557307 SCAF11Q99590 1463 aaKnown RBP16.96■□□□□ 0.31
SYNE2-227ENST00000557307 KANK1Q14678 1352 aa16.95■□□□□ 0.3
SYNE2-227ENST00000557307 ADGRB3O60242 1522 aa16.95■□□□□ 0.3
SYNE2-227ENST00000557307 NOS1P29475 1434 aa16.95■□□□□ 0.3
SYNE2-227ENST00000557307 LTKP29376 864 aa16.94■□□□□ 0.3
SYNE2-227ENST00000557307 IQGAP3Q86VI3 1631 aa16.93■□□□□ 0.3
SYNE2-227ENST00000557307 UBAP1LF5GYI3 381 aa16.93■□□□□ 0.3
SYNE2-227ENST00000557307 LRRC7Q96NW7 1537 aa16.91■□□□□ 0.3
SYNE2-227ENST00000557307 TMEM131LA2VDJ0 1609 aa16.89■□□□□ 0.29
SYNE2-227ENST00000557307 IDI1Q13907 227 aa16.89■□□□□ 0.29
SYNE2-227ENST00000557307 TMEM2Q9UHN6 1383 aa16.89■□□□□ 0.29
SYNE2-227ENST00000557307 RPRD2Q5VT52 1461 aaKnown RBP16.86■□□□□ 0.29
SYNE2-227ENST00000557307 ITGAEP38570 1179 aa16.86■□□□□ 0.29
SYNE2-227ENST00000557307 TXNDC2Q86VQ3 553 aa16.86■□□□□ 0.29
SYNE2-227ENST00000557307 ROCK1Q13464 1354 aa16.86■□□□□ 0.29
SYNE2-227ENST00000557307 DISP3Q9P2K9 1392 aa16.85■□□□□ 0.29
SYNE2-227ENST00000557307 SPHKAPQ2M3C7 1700 aa16.84■□□□□ 0.29
SYNE2-227ENST00000557307 PIP4K2BP78356 416 aa16.83■□□□□ 0.28
SYNE2-227ENST00000557307 ILDR2Q71H61 639 aa16.83■□□□□ 0.28
SYNE2-227ENST00000557307 SENP3Q9H4L4 574 aaPredicted RBP16.83■□□□□ 0.28
SYNE2-227ENST00000557307 NWD1Q149M9 1564 aa16.82■□□□□ 0.28
SYNE2-227ENST00000557307 ZFYVE9O95405 1425 aa16.82■□□□□ 0.28
SYNE2-227ENST00000557307 SCAF1Q9H7N4 1312 aaKnown RBP16.81■□□□□ 0.28
SYNE2-227ENST00000557307 RRBP1Q9P2E9 1410 aaKnown RBP16.8■□□□□ 0.28
SYNE2-227ENST00000557307 CHD2O14647 1828 aaKnown RBP16.8■□□□□ 0.28
SYNE2-227ENST00000557307 HSPA1LP34931 641 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms