RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 KIAA0754O94854 1291 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 ERLIN2O94905 339 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 RB1CC1Q8TDY2 1594 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 RABEP1Q15276 862 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 CT47A1Q5JQC4 288 aaPredicted RBP10.79□□□□□ -0.68
SYNE3-205ENST00000557275 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.79□□□□□ -0.68
SYNE3-205ENST00000557275 AMOTL1Q8IY63 956 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 LMOD3Q0VAK6 560 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 GOLGA3Q08378 1498 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 MNS1Q8NEH6 495 aa10.79□□□□□ -0.68
SYNE3-205ENST00000557275 STK31Q9BXU1 1019 aa10.78□□□□□ -0.68
SYNE3-205ENST00000557275 SLKQ9H2G2 1235 aaPredicted RBP10.78□□□□□ -0.68
SYNE3-205ENST00000557275 CREBRFQ8IUR6 639 aa10.78□□□□□ -0.68
SYNE3-205ENST00000557275 GSE1Q14687 1217 aa10.78□□□□□ -0.68
SYNE3-205ENST00000557275 LUC7LQ9NQ29 371 aaKnown RBP10.78□□□□□ -0.68
SYNE3-205ENST00000557275 NEUROD2Q15784 382 aa10.77□□□□□ -0.69
SYNE3-205ENST00000557275 KIF7Q2M1P5 1343 aa10.77□□□□□ -0.69
SYNE3-205ENST00000557275 U2SURPO15042 1029 aaKnown RBP10.77□□□□□ -0.69
SYNE3-205ENST00000557275 DEF6Q9H4E7 631 aa10.77□□□□□ -0.69
SYNE3-205ENST00000557275 FAM43AQ8N2R8 423 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 REC8O95072 547 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.76□□□□□ -0.696e-9■■■■■ 134.6
SYNE3-205ENST00000557275 FAM184AQ8NB25 1140 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 IQCEQ6IPM2 695 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 SYNE3Q6ZMZ3 975 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 TRIM29Q14134 588 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 RALBP1Q15311 655 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 TAF7LQ5H9L4 462 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 CHIC2Q9UKJ5 165 aa10.76□□□□□ -0.69
SYNE3-205ENST00000557275 TRIM6-TRIM34B2RNG4 842 aa10.75□□□□□ -0.69
SYNE3-205ENST00000557275 ROCK2O75116 1388 aaKnown RBP10.75□□□□□ -0.69
SYNE3-205ENST00000557275 B4GALNT3Q6L9W6 998 aa10.75□□□□□ -0.69
SYNE3-205ENST00000557275 FHAD1B1AJZ9 1412 aa10.75□□□□□ -0.69
SYNE3-205ENST00000557275 DDX49Q9Y6V7 483 aaKnown RBP10.75□□□□□ -0.69
SYNE3-205ENST00000557275 PDE3BQ13370 1112 aa10.75□□□□□ -0.69
SYNE3-205ENST00000557275 PDE4CQ08493 712 aa10.75□□□□□ -0.69
SYNE3-205ENST00000557275 VPS53Q5VIR6 699 aa10.75□□□□□ -0.69
SYNE3-205ENST00000557275 SCRIBQ14160 1630 aa10.74□□□□□ -0.69
SYNE3-205ENST00000557275 SPRYD3Q8NCJ5 442 aa10.74□□□□□ -0.69
SYNE3-205ENST00000557275 ROCK1Q13464 1354 aa10.74□□□□□ -0.69
SYNE3-205ENST00000557275 RUFY2Q8WXA3 655 aa10.74□□□□□ -0.69
SYNE3-205ENST00000557275 LETM1O95202 739 aaPredicted RBP10.74□□□□□ -0.69
SYNE3-205ENST00000557275 PIP4K2AP48426 406 aaPredicted RBP10.74□□□□□ -0.69
SYNE3-205ENST00000557275 CGNL1Q0VF96 1302 aa10.74□□□□□ -0.69
SYNE3-205ENST00000557275 CNKSR2Q8WXI2 1034 aa10.73□□□□□ -0.69
SYNE3-205ENST00000557275 ITPRIPQ8IWB1 547 aa10.73□□□□□ -0.69
SYNE3-205ENST00000557275 EIF3JO75822 258 aaKnown RBP10.73□□□□□ -0.69
SYNE3-205ENST00000557275 CEP162Q5TB80 1403 aa10.73□□□□□ -0.69
SYNE3-205ENST00000557275 SPATA24Q86W54 205 aa10.73□□□□□ -0.69
SYNE3-205ENST00000557275 RCAN3Q9UKA8 241 aa10.73□□□□□ -0.69
SYNE3-205ENST00000557275 CCDC39Q9UFE4 941 aa10.73□□□□□ -0.69
SYNE3-205ENST00000557275 EPS15P42566 896 aa10.72□□□□□ -0.69
SYNE3-205ENST00000557275 PCMTD1Q96MG8 357 aaPredicted RBP10.72□□□□□ -0.69
SYNE3-205ENST00000557275 FOXD1Q16676 465 aa10.72□□□□□ -0.69
SYNE3-205ENST00000557275 SEPT11Q9NVA2 429 aaKnown RBP10.72□□□□□ -0.69
SYNE3-205ENST00000557275 HMGB1P1B2RPK0 211 aaPredicted RBP10.72□□□□□ -0.69
SYNE3-205ENST00000557275 NF2P35240 595 aa10.71□□□□□ -0.69
SYNE3-205ENST00000557275 PLEKHD1A6NEE1 506 aa10.71□□□□□ -0.69
SYNE3-205ENST00000557275 CCDC43Q96MW1 224 aaKnown RBP10.71□□□□□ -0.69
SYNE3-205ENST00000557275 FAM13BQ9NYF5 915 aa10.71□□□□□ -0.69
SYNE3-205ENST00000557275 PPM1EQ8WY54 764 aa10.71□□□□□ -0.69
SYNE3-205ENST00000557275 ZCCHC6Q5VYS8 1495 aaKnown RBP10.71□□□□□ -0.69
SYNE3-205ENST00000557275 AEBP2Q6ZN18 517 aaPredicted RBP10.71□□□□□ -0.69
SYNE3-205ENST00000557275 ZNF592Q92610 1267 aa10.71□□□□□ -0.69
SYNE3-205ENST00000557275 R3HCC1Q9Y3T6 440 aaKnown RBP10.71□□□□□ -0.69
SYNE3-205ENST00000557275 RNF20Q5VTR2 975 aa10.71□□□□□ -0.7
SYNE3-205ENST00000557275 FAM107BQ9H098 131 aa10.71□□□□□ -0.7
SYNE3-205ENST00000557275 G3V3G9 751 aa10.71□□□□□ -0.7
SYNE3-205ENST00000557275 ZKSCAN1P17029 563 aaPredicted RBP10.71□□□□□ -0.7
SYNE3-205ENST00000557275 DCAF8Q5TAQ9 597 aa10.71□□□□□ -0.7
SYNE3-205ENST00000557275 HSP90AB2PQ58FF8 381 aa10.71□□□□□ -0.7
SYNE3-205ENST00000557275 MEX3CQ5U5Q3 659 aaKnown RBP10.71□□□□□ -0.7
SYNE3-205ENST00000557275 KIF3BO15066 747 aa10.71□□□□□ -0.7
SYNE3-205ENST00000557275 AAMPQ13685 434 aa10.7□□□□□ -0.7
SYNE3-205ENST00000557275 SMARCE1Q969G3 411 aa10.7□□□□□ -0.7
SYNE3-205ENST00000557275 ERLIN1O75477 346 aa10.7□□□□□ -0.7
SYNE3-205ENST00000557275 HDGFL2Q7Z4V5 671 aaPredicted RBP10.7□□□□□ -0.7
SYNE3-205ENST00000557275 SMC4Q9NTJ3 1288 aa10.7□□□□□ -0.7
SYNE3-205ENST00000557275 MORC1Q86VD1 984 aa10.7□□□□□ -0.7
SYNE3-205ENST00000557275 SEPT7Q16181 437 aaKnown RBP10.7□□□□□ -0.7
SYNE3-205ENST00000557275 NOL10Q9BSC4 688 aaKnown RBP10.69□□□□□ -0.7
SYNE3-205ENST00000557275 SASS6Q6UVJ0 657 aa10.69□□□□□ -0.7
SYNE3-205ENST00000557275 NUCB2P80303 420 aa10.69□□□□□ -0.7
SYNE3-205ENST00000557275 HSP90AB3PQ58FF7 597 aa10.69□□□□□ -0.7
SYNE3-205ENST00000557275 OFD1O75665 1012 aa10.69□□□□□ -0.7
SYNE3-205ENST00000557275 MFAP1P55081 439 aaKnown RBP10.69□□□□□ -0.7
SYNE3-205ENST00000557275 CLASRPQ8N2M8 674 aaKnown RBP10.69□□□□□ -0.7
SYNE3-205ENST00000557275 CHMP5Q9NZZ3 219 aa10.69□□□□□ -0.7
SYNE3-205ENST00000557275 BRMS1Q9HCU9 246 aa10.68□□□□□ -0.7
SYNE3-205ENST00000557275 IFT57Q9NWB7 429 aa10.68□□□□□ -0.7
SYNE3-205ENST00000557275 NAP1L1P55209 391 aaKnown RBP10.68□□□□□ -0.7
SYNE3-205ENST00000557275 CENPQQ7L2Z9 268 aaPredicted RBP10.68□□□□□ -0.7
SYNE3-205ENST00000557275 DDX11Q96FC9 970 aa10.68□□□□□ -0.7
SYNE3-205ENST00000557275 GOLGA6L10A0A0M3HER8 536 aa10.68□□□□□ -0.7
SYNE3-205ENST00000557275 CENPJQ9HC77 1338 aaPredicted RBP10.68□□□□□ -0.7
SYNE3-205ENST00000557275 CT47B1P0C2W7 299 aaPredicted RBP10.68□□□□□ -0.7
SYNE3-205ENST00000557275 SLC26A8Q96RN1 970 aa10.67□□□□□ -0.7
SYNE3-205ENST00000557275 NGEFQ8N5V2 710 aa10.67□□□□□ -0.7
SYNE3-205ENST00000557275 GBP2P32456 591 aaPredicted RBP10.67□□□□□ -0.7
SYNE3-205ENST00000557275 CFAP57Q96MR6 1250 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms