RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CCDC141Q6ZP82 1450 aa7.08□□□□□ -1.28
TMEM260-210ENST00000556422 MAST1Q9Y2H9 1570 aa7.08□□□□□ -1.28
TMEM260-210ENST00000556422 DEKP35659 375 aaKnown RBP7.07□□□□□ -1.28
TMEM260-210ENST00000556422 DDX10Q13206 875 aaKnown RBP7.07□□□□□ -1.28
TMEM260-210ENST00000556422 L3MBTL2Q969R5 705 aa7.07□□□□□ -1.28
TMEM260-210ENST00000556422 FBXO3Q9UK99 471 aa7.07□□□□□ -1.28
TMEM260-210ENST00000556422 POLR1AO95602 1720 aaPredicted RBP7.07□□□□□ -1.28
TMEM260-210ENST00000556422 SLC4A1APQ9BWU0 796 aaKnown RBP7.07□□□□□ -1.28
TMEM260-210ENST00000556422 KIAA1107Q9UPP5 1409 aa7.07□□□□□ -1.28
TMEM260-210ENST00000556422 ARHGAP5Q13017 1502 aa7.06□□□□□ -1.28
TMEM260-210ENST00000556422 NAP1L5Q96NT1 182 aaPredicted RBP7.06□□□□□ -1.28
TMEM260-210ENST00000556422 ARHGEF12Q9NZN5 1544 aa7.06□□□□□ -1.28
TMEM260-210ENST00000556422 PLXNC1O60486 1568 aa7.06□□□□□ -1.28
TMEM260-210ENST00000556422 HNRNPMP52272 730 aaKnown RBP eCLIP7.06□□□□□ -1.28
TMEM260-210ENST00000556422 KCNH8Q96L42 1107 aa7.06□□□□□ -1.28
TMEM260-210ENST00000556422 ZNF326Q5BKZ1 582 aaKnown RBP7.05□□□□□ -1.28
TMEM260-210ENST00000556422 SAMD1Q6SPF0 538 aaPredicted RBP7.05□□□□□ -1.28
TMEM260-210ENST00000556422 KIF15Q9NS87 1388 aa7.05□□□□□ -1.28
TMEM260-210ENST00000556422 UNC13BO14795 1591 aa7.05□□□□□ -1.28
TMEM260-210ENST00000556422 TRHP20396 242 aaPredicted RBP7.05□□□□□ -1.28
TMEM260-210ENST00000556422 NBPF8Q3BBV2 869 aa7.04□□□□□ -1.28
TMEM260-210ENST00000556422 ABCC1P33527 1531 aa7.04□□□□□ -1.28
TMEM260-210ENST00000556422 SPATA31E1Q6ZUB1 1445 aa7.04□□□□□ -1.28
TMEM260-210ENST00000556422 IRX6P78412 446 aaPredicted RBP7.03□□□□□ -1.28
TMEM260-210ENST00000556422 FAM135AQ9P2D6 1515 aa7.03□□□□□ -1.28
TMEM260-210ENST00000556422 ERICH6BQ5W0A0 696 aa7.03□□□□□ -1.28
TMEM260-210ENST00000556422 PLCH2O75038 1416 aa7.03□□□□□ -1.28
TMEM260-210ENST00000556422 MYT1LQ9UL68 1186 aa7.03□□□□□ -1.28
TMEM260-210ENST00000556422 WASHC2AQ641Q2 1341 aa7.03□□□□□ -1.28
TMEM260-210ENST00000556422 TSPY4P0CV99 314 aa7.02□□□□□ -1.28
TMEM260-210ENST00000556422 TSPY10P0CW01 314 aa7.02□□□□□ -1.28
TMEM260-210ENST00000556422 HSPA5P11021 654 aaKnown RBP7.02□□□□□ -1.28
TMEM260-210ENST00000556422 PKD2Q13563 968 aa7.02□□□□□ -1.28
TMEM260-210ENST00000556422 NUP155O75694 1391 aa7.02□□□□□ -1.29
TMEM260-210ENST00000556422 IQGAP3Q86VI3 1631 aa7.02□□□□□ -1.29
TMEM260-210ENST00000556422 MAGI2Q86UL8 1455 aa7.02□□□□□ -1.29
TMEM260-210ENST00000556422 ARAP3Q8WWN8 1544 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 ABCA9Q8IUA7 1624 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 PLEKHH2Q8IVE3 1493 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 BCORL1Q5H9F3 1711 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 KDM5CP41229 1560 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 RSPH4AQ5TD94 716 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 CFAP44Q96MT7 982 aa7.01□□□□□ -1.29
TMEM260-210ENST00000556422 C11orf95C9JLR9 678 aaPredicted RBP7□□□□□ -1.29
TMEM260-210ENST00000556422 RBM10P98175 930 aaKnown RBP7□□□□□ -1.29
TMEM260-210ENST00000556422 WDR7Q9Y4E6 1490 aa7□□□□□ -1.29
TMEM260-210ENST00000556422 DUOX2Q9NRD8 1548 aa7□□□□□ -1.29
TMEM260-210ENST00000556422 EIF4G2P78344 907 aaKnown RBP eCLIP7□□□□□ -1.29
TMEM260-210ENST00000556422 UHRF1BP1Q6BDS2 1440 aa6.99□□□□□ -1.29
TMEM260-210ENST00000556422 TRAPPC8Q9Y2L5 1435 aa6.99□□□□□ -1.29
TMEM260-210ENST00000556422 ZFYVE16Q7Z3T8 1539 aa6.99□□□□□ -1.29
TMEM260-210ENST00000556422 PLA2R1Q13018 1463 aa6.99□□□□□ -1.29
TMEM260-210ENST00000556422 AAMPQ13685 434 aa6.99□□□□□ -1.29
TMEM260-210ENST00000556422 VSIG10Q8N0Z9 540 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 INO80Q9ULG1 1556 aaPredicted RBP6.98□□□□□ -1.29
TMEM260-210ENST00000556422 ERBINQ96RT1 1412 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 CYB5RLQ6IPT4 315 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 DEPDC5O75140 1603 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 CCDC7Q96M83 1385 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 RALGAPBQ86X10 1494 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 CCER2I3L3R5 266 aa6.98□□□□□ -1.29
TMEM260-210ENST00000556422 CNTLNQ9NXG0 1405 aa6.97□□□□□ -1.29
TMEM260-210ENST00000556422 TMEM132AQ24JP5 1023 aa6.97□□□□□ -1.29
TMEM260-210ENST00000556422 TRPM1Q7Z4N2 1603 aa6.97□□□□□ -1.29
TMEM260-210ENST00000556422 HSP90B1P14625 803 aaKnown RBP6.97□□□□□ -1.29
TMEM260-210ENST00000556422 E9PCH4 1651 aa6.97□□□□□ -1.29
TMEM260-210ENST00000556422 ANP32CO43423 234 aa6.96□□□□□ -1.29
TMEM260-210ENST00000556422 ATP10AO60312 1499 aa6.96□□□□□ -1.3
TMEM260-210ENST00000556422 EFCAB2Q5VUJ9 269 aa6.96□□□□□ -1.3
TMEM260-210ENST00000556422 ZMYND15Q9H091 742 aa6.96□□□□□ -1.3
TMEM260-210ENST00000556422 FANCAO15360 1455 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 ASXL2Q76L83 1435 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 KIF7Q2M1P5 1343 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 USP47Q96K76 1375 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 RTEL1-TNFRSF6BF6WH68 1400 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 ATP7AQ04656 1500 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 CNKSR2Q8WXI2 1034 aa6.95□□□□□ -1.3
TMEM260-210ENST00000556422 A2MP01023 1474 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 PLCB2Q00722 1185 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 MROH1Q8NDA8 1641 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 KIDINS220Q9ULH0 1771 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 VWDEQ8N2E2 1590 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 SPHKAPQ2M3C7 1700 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 CCDC144AA2RUR9 1427 aa6.94□□□□□ -1.3
TMEM260-210ENST00000556422 AFAP1Q8N556 730 aa6.93□□□□□ -1.3
TMEM260-210ENST00000556422 CEP152O94986 1710 aa6.93□□□□□ -1.3
TMEM260-210ENST00000556422 PRAG1Q86YV5 1406 aa6.93□□□□□ -1.3
TMEM260-210ENST00000556422 ZBTB22O15209 634 aa6.93□□□□□ -1.3
TMEM260-210ENST00000556422 EIF2AK4Q9P2K8 1649 aaKnown RBP6.93□□□□□ -1.3
TMEM260-210ENST00000556422 ADGRL1O94910 1474 aa6.93□□□□□ -1.3
TMEM260-210ENST00000556422 TET3O43151 1660 aa6.93□□□□□ -1.3
TMEM260-210ENST00000556422 LAMC1P11047 1609 aa6.92□□□□□ -1.3
TMEM260-210ENST00000556422 RNF17Q9BXT8 1623 aaKnown RBP6.92□□□□□ -1.3
TMEM260-210ENST00000556422 PRDM15P57071 1507 aaPredicted RBP6.92□□□□□ -1.3
TMEM260-210ENST00000556422 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.92□□□□□ -1.3
TMEM260-210ENST00000556422 DHX29Q7Z478 1369 aaKnown RBP6.91□□□□□ -1.3
TMEM260-210ENST00000556422 TRPM2O94759 1503 aa6.91□□□□□ -1.3
TMEM260-210ENST00000556422 DCAF11Q8TEB1 546 aa6.91□□□□□ -1.3
TMEM260-210ENST00000556422 SPAG9O60271 1321 aaKnown RBP6.91□□□□□ -1.3
TMEM260-210ENST00000556422 CLTCL1P53675 1640 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms