RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PROX2Q3B8N5 592 aa11.21□□□□□ -0.61
SCFD1-219ENST00000556413 MRPL50Q8N5N7 158 aaKnown RBP11.21□□□□□ -0.61
SCFD1-219ENST00000556413 DDX12PQ92771 950 aa11.21□□□□□ -0.61
SCFD1-219ENST00000556413 PLA2G2EQ9NZK7 142 aa11.21□□□□□ -0.61
SCFD1-219ENST00000556413 PDIA6Q15084 440 aa11.2□□□□□ -0.62
SCFD1-219ENST00000556413 E2F4Q16254 413 aa11.2□□□□□ -0.62
SCFD1-219ENST00000556413 C6orf132Q5T0Z8 1188 aa11.2□□□□□ -0.62
SCFD1-219ENST00000556413 NBPF3Q9H094 633 aa11.19□□□□□ -0.62
SCFD1-219ENST00000556413 GOLGA8CPA6NN73 597 aa11.18□□□□□ -0.62
SCFD1-219ENST00000556413 PTPN5P54829 565 aa11.18□□□□□ -0.62
SCFD1-219ENST00000556413 RBM33Q96EV2 1170 aaKnown RBP11.18□□□□□ -0.62
SCFD1-219ENST00000556413 RABGEF1Q9UJ41 708 aa11.18□□□□□ -0.62
SCFD1-219ENST00000556413 THSD4Q6ZMP0 1018 aa11.17□□□□□ -0.62
SCFD1-219ENST00000556413 WNT2BQ93097 391 aa11.17□□□□□ -0.62
SCFD1-219ENST00000556413 WDR70Q9NW82 654 aa11.17□□□□□ -0.62
SCFD1-219ENST00000556413 SPDYE16A6NNV3 312 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-219ENST00000556413 ARIH1Q9Y4X5 557 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-219ENST00000556413 NBR1Q14596 966 aa11.14□□□□□ -0.63
SCFD1-219ENST00000556413 KIAA1468Q9P260 1216 aa11.13□□□□□ -0.63
SCFD1-219ENST00000556413 ONECUT3O60422 494 aaPredicted RBP11.12□□□□□ -0.63
SCFD1-219ENST00000556413 EN1Q05925 392 aaPredicted RBP11.12□□□□□ -0.63
SCFD1-219ENST00000556413 TSR1Q2NL82 804 aaKnown RBP11.1□□□□□ -0.63
SCFD1-219ENST00000556413 TRIM6-TRIM34B2RNG4 842 aa11.09□□□□□ -0.63
SCFD1-219ENST00000556413 MAP3K7O43318 606 aa11.09□□□□□ -0.63
SCFD1-219ENST00000556413 LAPTM4BQ86VI4 370 aa11.08□□□□□ -0.64
SCFD1-219ENST00000556413 PRIM1P49642 420 aaKnown RBP11.07□□□□□ -0.64
SCFD1-219ENST00000556413 ANKK1Q8NFD2 765 aa11.07□□□□□ -0.64
SCFD1-219ENST00000556413 GRXCR2A6NFK2 248 aa11.06□□□□□ -0.64
SCFD1-219ENST00000556413 TSHZ2Q9NRE2 1034 aa11.06□□□□□ -0.64
SCFD1-219ENST00000556413 SEPT9Q9UHD8 586 aaPredicted RBP11.06□□□□□ -0.64
SCFD1-219ENST00000556413 ZFRQ96KR1 1074 aaKnown RBP11.05□□□□□ -0.64
SCFD1-219ENST00000556413 BCAMP50895 628 aa11.03□□□□□ -0.64
SCFD1-219ENST00000556413 TSKSQ9UJT2 592 aa11.03□□□□□ -0.64
SCFD1-219ENST00000556413 SOWAHBA6NEL2 793 aa11.02□□□□□ -0.65
SCFD1-219ENST00000556413 OSBPP22059 807 aa11.01□□□□□ -0.65
SCFD1-219ENST00000556413 FAM98CQ17RN3 349 aaKnown RBP11.01□□□□□ -0.65
SCFD1-219ENST00000556413 IFFO2Q5TF58 517 aa10.99□□□□□ -0.65
SCFD1-219ENST00000556413 PACS2Q86VP3 889 aa10.99□□□□□ -0.65
SCFD1-219ENST00000556413 CDCA7LQ96GN5 454 aa10.99□□□□□ -0.65
SCFD1-219ENST00000556413 PRSS12P56730 875 aa10.98□□□□□ -0.65
SCFD1-219ENST00000556413 CERKQ8TCT0 537 aa10.98□□□□□ -0.65
SCFD1-219ENST00000556413 CDHR5Q9HBB8 845 aa10.97□□□□□ -0.65
SCFD1-219ENST00000556413 FAM198AQ9UFP1 575 aa10.97□□□□□ -0.65
SCFD1-219ENST00000556413 WBP1LQ9NX94 342 aa10.96□□□□□ -0.65
SCFD1-219ENST00000556413 ARHGEF1Q92888 912 aaKnown RBP10.94□□□□□ -0.66
SCFD1-219ENST00000556413 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.94□□□□□ -0.66
SCFD1-219ENST00000556413 C3orf80F5H4A9 247 aa10.93□□□□□ -0.66
SCFD1-219ENST00000556413 SMAPO00193 183 aa10.93□□□□□ -0.66
SCFD1-219ENST00000556413 NYAP1Q6ZVC0 841 aa10.93□□□□□ -0.66
SCFD1-219ENST00000556413 KCNV2Q8TDN2 545 aa10.93□□□□□ -0.66
SCFD1-219ENST00000556413 LRCH3Q96II8 777 aa10.93□□□□□ -0.66
SCFD1-219ENST00000556413 TSR3Q9UJK0 312 aaKnown RBP10.91□□□□□ -0.66
SCFD1-219ENST00000556413 HPS5Q9UPZ3 1129 aa10.91□□□□□ -0.66
SCFD1-219ENST00000556413 A0A0G2JS52 829 aa10.9□□□□□ -0.66
SCFD1-219ENST00000556413 ITGBL1O95965 494 aaPredicted RBP10.9□□□□□ -0.66
SCFD1-219ENST00000556413 TATDN2Q93075 761 aa10.9□□□□□ -0.66
SCFD1-219ENST00000556413 NPDC1Q9NQX5 325 aaPredicted RBP10.9□□□□□ -0.66
SCFD1-219ENST00000556413 MLLT3P42568 568 aaPredicted RBP10.89□□□□□ -0.67
SCFD1-219ENST00000556413 PNMA3Q9UL41 463 aa10.89□□□□□ -0.67
SCFD1-219ENST00000556413 NBPF26B4DH59 902 aa10.88□□□□□ -0.67
SCFD1-219ENST00000556413 RBM27Q9P2N5 1060 aaKnown RBP10.88□□□□□ -0.67
SCFD1-219ENST00000556413 SAMD7Q7Z3H4 446 aa10.87□□□□□ -0.67
SCFD1-219ENST00000556413 TTC13Q8NBP0 860 aa10.87□□□□□ -0.67
SCFD1-219ENST00000556413 NUDT18Q6ZVK8 323 aa10.86□□□□□ -0.67
SCFD1-219ENST00000556413 PPP4CP60510 307 aa10.85□□□□□ -0.67
SCFD1-219ENST00000556413 RGS20O76081 388 aa10.84□□□□□ -0.67
SCFD1-219ENST00000556413 PADI6Q6TGC4 694 aa10.84□□□□□ -0.67
SCFD1-219ENST00000556413 KCNC4Q03721 635 aa10.82□□□□□ -0.68
SCFD1-219ENST00000556413 PLCB2Q00722 1185 aa10.81□□□□□ -0.68
SCFD1-219ENST00000556413 P3H3Q8IVL6 736 aa10.79□□□□□ -0.68
SCFD1-219ENST00000556413 HDGFP51858 240 aaKnown RBP10.77□□□□□ -0.69
SCFD1-219ENST00000556413 PTGDRQ13258 359 aa10.77□□□□□ -0.69
SCFD1-219ENST00000556413 EYA1Q99502 592 aa10.76□□□□□ -0.69
SCFD1-219ENST00000556413 SEMA3EO15041 775 aa10.75□□□□□ -0.69
SCFD1-219ENST00000556413 RNF40O75150 1001 aa10.75□□□□□ -0.69
SCFD1-219ENST00000556413 TJAP1Q5JTD0 557 aa10.74□□□□□ -0.69
SCFD1-219ENST00000556413 SWT1Q5T5J6 900 aaKnown RBP10.74□□□□□ -0.69
SCFD1-219ENST00000556413 NUTM2FA1L443 756 aa10.71□□□□□ -0.69
SCFD1-219ENST00000556413 APLP1P51693 650 aa10.71□□□□□ -0.69
SCFD1-219ENST00000556413 MTRQ99707 1265 aa10.71□□□□□ -0.69
SCFD1-219ENST00000556413 SLF2Q8IX21 1173 aa10.7□□□□□ -0.7
SCFD1-219ENST00000556413 IRX2Q9BZI1 471 aaPredicted RBP10.69□□□□□ -0.7
SCFD1-219ENST00000556413 IL21Q9HBE4 155 aa10.68□□□□□ -0.7
SCFD1-219ENST00000556413 ADGRG1Q9Y653 693 aa10.68□□□□□ -0.7
SCFD1-219ENST00000556413 NECTIN2Q92692 538 aa10.67□□□□□ -0.7
SCFD1-219ENST00000556413 RBM46Q8TBY0 533 aaKnown RBP10.66□□□□□ -0.7
SCFD1-219ENST00000556413 ZNF516Q92618 1163 aa10.66□□□□□ -0.7
SCFD1-219ENST00000556413 TESPA1A2RU30 521 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-219ENST00000556413 FCHSD2O94868 740 aa10.65□□□□□ -0.7
SCFD1-219ENST00000556413 DNAJB2P25686 324 aa10.65□□□□□ -0.7
SCFD1-219ENST00000556413 FAM161AQ3B820 660 aa10.65□□□□□ -0.7
SCFD1-219ENST00000556413 SLC4A3P48751 1232 aa10.64□□□□□ -0.71
SCFD1-219ENST00000556413 TMEM134Q9H6X4 195 aa10.63□□□□□ -0.71
SCFD1-219ENST00000556413 RCCD1A6NED2 376 aa10.62□□□□□ -0.71
SCFD1-219ENST00000556413 HAP1P54257 671 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-219ENST00000556413 RBM26Q5T8P6 1007 aaKnown RBP10.62□□□□□ -0.71
SCFD1-219ENST00000556413 COPS2P61201 443 aa10.61□□□□□ -0.71
SCFD1-219ENST00000556413 PPP1R18Q6NYC8 613 aa10.6□□□□□ -0.71
SCFD1-219ENST00000556413 NKX2-3Q8TAU0 364 aa10.6□□□□□ -0.71
SCFD1-219ENST00000556413 HIC1Q14526 733 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms