RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 MIA2Q96PC5 1412 aa19.08■□□□□ 0.64
ARHGEF40-207ENST00000556399 ITPRIPQ8IWB1 547 aa19.08■□□□□ 0.64
ARHGEF40-207ENST00000556399 C11orf95C9JLR9 678 aaPredicted RBP19.07■□□□□ 0.64
ARHGEF40-207ENST00000556399 PNNQ9H307 717 aaKnown RBP19.07■□□□□ 0.64
ARHGEF40-207ENST00000556399 ANKRD50Q9ULJ7 1429 aa19.05■□□□□ 0.64
ARHGEF40-207ENST00000556399 E9PSI1 815 aa19.05■□□□□ 0.64
ARHGEF40-207ENST00000556399 APAF1O14727 1248 aa19.05■□□□□ 0.64
ARHGEF40-207ENST00000556399 SAFB2Q14151 953 aaKnown RBP eCLIP19.05■□□□□ 0.64
ARHGEF40-207ENST00000556399 NFKBIBQ15653 356 aa19.05■□□□□ 0.64
ARHGEF40-207ENST00000556399 EFCAB2Q5VUJ9 269 aa19.05■□□□□ 0.64
ARHGEF40-207ENST00000556399 PEG3Q9GZU2 1588 aa19.04■□□□□ 0.64
ARHGEF40-207ENST00000556399 IPO8O15397 1037 aaKnown RBP19.04■□□□□ 0.64
ARHGEF40-207ENST00000556399 SRPK2P78362 688 aaKnown RBP19.04■□□□□ 0.64
ARHGEF40-207ENST00000556399 BICRAQ9NZM4 1560 aa19.04■□□□□ 0.64
ARHGEF40-207ENST00000556399 GBP4Q96PP9 640 aa19.03■□□□□ 0.64
ARHGEF40-207ENST00000556399 COG6Q9Y2V7 657 aa19.03■□□□□ 0.64
ARHGEF40-207ENST00000556399 CGNL1Q0VF96 1302 aa19.03■□□□□ 0.64
ARHGEF40-207ENST00000556399 RRP7AQ9Y3A4 280 aaKnown RBP19.03■□□□□ 0.64
ARHGEF40-207ENST00000556399 SMC4Q9NTJ3 1288 aa19.02■□□□□ 0.64
ARHGEF40-207ENST00000556399 BIVM-ERCC5R4GMW8 1640 aa19.02■□□□□ 0.63
ARHGEF40-207ENST00000556399 SUPT6HQ7KZ85 1726 aaKnown RBP19.01■□□□□ 0.63
ARHGEF40-207ENST00000556399 DNTTIP2Q5QJE6 756 aaKnown RBP19.01■□□□□ 0.63
ARHGEF40-207ENST00000556399 BACH2Q9BYV9 841 aa19.01■□□□□ 0.63
ARHGEF40-207ENST00000556399 TPRNQ4KMQ1 711 aa19■□□□□ 0.63
ARHGEF40-207ENST00000556399 BCL2L13Q9BXK5 485 aa18.99■□□□□ 0.63
ARHGEF40-207ENST00000556399 AQRO60306 1485 aaKnown RBP eCLIP18.99■□□□□ 0.631e-7■■■■□ 22.2
ARHGEF40-207ENST00000556399 MSNP26038 577 aaKnown RBP18.99■□□□□ 0.63
ARHGEF40-207ENST00000556399 ADAMTS8Q9UP79 889 aa18.98■□□□□ 0.63
ARHGEF40-207ENST00000556399 POLA1P09884 1462 aaPredicted RBP18.98■□□□□ 0.63
ARHGEF40-207ENST00000556399 KIAA1107Q9UPP5 1409 aa18.98■□□□□ 0.63
ARHGEF40-207ENST00000556399 PRDM2Q13029 1718 aa18.97■□□□□ 0.63
ARHGEF40-207ENST00000556399 IL27Q8NEV9 243 aa18.97■□□□□ 0.63
ARHGEF40-207ENST00000556399 KIF3BO15066 747 aa18.96■□□□□ 0.63
ARHGEF40-207ENST00000556399 RSPH6AQ9H0K4 717 aa18.96■□□□□ 0.63
ARHGEF40-207ENST00000556399 TOPBP1Q92547 1522 aa18.95■□□□□ 0.62
ARHGEF40-207ENST00000556399 DAPK1P53355 1430 aa18.95■□□□□ 0.62
ARHGEF40-207ENST00000556399 NCOA1Q15788 1441 aa18.95■□□□□ 0.62
ARHGEF40-207ENST00000556399 PTMSP20962 102 aa18.95■□□□□ 0.62
ARHGEF40-207ENST00000556399 SPAG9O60271 1321 aaKnown RBP18.94■□□□□ 0.62
ARHGEF40-207ENST00000556399 GGT6Q6P531 493 aa18.94■□□□□ 0.62
ARHGEF40-207ENST00000556399 STK26Q9P289 416 aa18.94■□□□□ 0.62
ARHGEF40-207ENST00000556399 PTPN23Q9H3S7 1636 aa18.93■□□□□ 0.62
ARHGEF40-207ENST00000556399 ANKRD30BQ9BXX2 1392 aa18.92■□□□□ 0.62
ARHGEF40-207ENST00000556399 PLPPR3Q6T4P5 718 aa18.92■□□□□ 0.62
ARHGEF40-207ENST00000556399 CFAP44Q96MT7 982 aa18.91■□□□□ 0.62
ARHGEF40-207ENST00000556399 HECW1Q76N89 1606 aa18.9■□□□□ 0.62
ARHGEF40-207ENST00000556399 NBPF1Q3BBV0 1214 aa18.9■□□□□ 0.62
ARHGEF40-207ENST00000556399 BRPF3Q9ULD4 1205 aa18.9■□□□□ 0.62
ARHGEF40-207ENST00000556399 TRAK1Q9UPV9 953 aa18.9■□□□□ 0.62
ARHGEF40-207ENST00000556399 FOXD4L1Q9NU39 408 aa18.9■□□□□ 0.62
ARHGEF40-207ENST00000556399 PLCB2Q00722 1185 aa18.89■□□□□ 0.61
ARHGEF40-207ENST00000556399 APBB1O00213 710 aa18.89■□□□□ 0.61
ARHGEF40-207ENST00000556399 NGEFQ8N5V2 710 aa18.89■□□□□ 0.61
ARHGEF40-207ENST00000556399 ZKSCAN2Q63HK3 967 aa18.89■□□□□ 0.61
ARHGEF40-207ENST00000556399 WASHC2CQ9Y4E1 1318 aa18.89■□□□□ 0.61
ARHGEF40-207ENST00000556399 NESP48681 1621 aa18.88■□□□□ 0.61
ARHGEF40-207ENST00000556399 DDX11L8A8MPP1 907 aa18.88■□□□□ 0.61
ARHGEF40-207ENST00000556399 HDGFL2Q7Z4V5 671 aaPredicted RBP18.88■□□□□ 0.61
ARHGEF40-207ENST00000556399 ROCK1Q13464 1354 aa18.88■□□□□ 0.61
ARHGEF40-207ENST00000556399 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
ARHGEF40-207ENST00000556399 FRAT2O75474 233 aaPredicted RBP18.86■□□□□ 0.61
ARHGEF40-207ENST00000556399 DNMBPQ6XZF7 1577 aa18.86■□□□□ 0.61
ARHGEF40-207ENST00000556399 PPP2R1AP30153 589 aa18.86■□□□□ 0.61
ARHGEF40-207ENST00000556399 PANK1Q8TE04 598 aa18.86■□□□□ 0.61
ARHGEF40-207ENST00000556399 EPRSP07814 1512 aaKnown RBP18.86■□□□□ 0.61
ARHGEF40-207ENST00000556399 CDK13Q14004 1512 aaKnown RBP18.86■□□□□ 0.61
ARHGEF40-207ENST00000556399 PTPRGP23470 1445 aa18.85■□□□□ 0.61
ARHGEF40-207ENST00000556399 ANO8Q9HCE9 1232 aaPredicted RBP18.85■□□□□ 0.61
ARHGEF40-207ENST00000556399 PTPRKQ15262 1439 aa18.85■□□□□ 0.61
ARHGEF40-207ENST00000556399 CALD1Q05682 793 aaKnown RBP18.85■□□□□ 0.61
ARHGEF40-207ENST00000556399 UNC13AQ9UPW8 1703 aa18.84■□□□□ 0.61
ARHGEF40-207ENST00000556399 PRG4Q92954 1404 aaPredicted RBP18.83■□□□□ 0.61
ARHGEF40-207ENST00000556399 MCCP23508 829 aa18.82■□□□□ 0.6
ARHGEF40-207ENST00000556399 HAP1P54257 671 aaPredicted RBP18.81■□□□□ 0.6
ARHGEF40-207ENST00000556399 RPRD2Q5VT52 1461 aaKnown RBP18.81■□□□□ 0.6
ARHGEF40-207ENST00000556399 NUTM2DQ5VT03 806 aaPredicted RBP18.81■□□□□ 0.6
ARHGEF40-207ENST00000556399 C14orf37Q86TY3 774 aa18.81■□□□□ 0.6
ARHGEF40-207ENST00000556399 GRIN2BQ13224 1484 aa18.81■□□□□ 0.6
ARHGEF40-207ENST00000556399 CHMP5Q9NZZ3 219 aa18.81■□□□□ 0.6
ARHGEF40-207ENST00000556399 C9orf84Q5VXU9 1444 aa18.8■□□□□ 0.6
ARHGEF40-207ENST00000556399 RUNDC1Q96C34 613 aa18.8■□□□□ 0.6
ARHGEF40-207ENST00000556399 TERF2IPQ9NYB0 399 aa18.8■□□□□ 0.6
ARHGEF40-207ENST00000556399 DZIP1LQ8IYY4 767 aaKnown RBP18.79■□□□□ 0.6
ARHGEF40-207ENST00000556399 TROQ12816 1431 aaPredicted RBP18.79■□□□□ 0.6
ARHGEF40-207ENST00000556399 ZBTB7CA1YPR0 619 aa18.79■□□□□ 0.6
ARHGEF40-207ENST00000556399 CUL7Q14999 1698 aa18.78■□□□□ 0.6
ARHGEF40-207ENST00000556399 SKAP1Q86WV1 359 aa18.78■□□□□ 0.6
ARHGEF40-207ENST00000556399 BCAR3O75815 825 aa18.78■□□□□ 0.6
ARHGEF40-207ENST00000556399 ABCC5O15440 1437 aa18.78■□□□□ 0.6
ARHGEF40-207ENST00000556399 DDX19BQ9UMR2 479 aa18.77■□□□□ 0.6
ARHGEF40-207ENST00000556399 ANKRD45Q5TZF3 282 aa18.77■□□□□ 0.6
ARHGEF40-207ENST00000556399 HSP90AA2PQ14568 343 aaPredicted RBP18.76■□□□□ 0.59
ARHGEF40-207ENST00000556399 C22orf23Q9BZE7 217 aa18.75■□□□□ 0.59
ARHGEF40-207ENST00000556399 AAMPQ13685 434 aa18.75■□□□□ 0.59
ARHGEF40-207ENST00000556399 SOX12O15370 315 aa18.75■□□□□ 0.59
ARHGEF40-207ENST00000556399 SKOR2Q2VWA4 1001 aaPredicted RBP18.75■□□□□ 0.59
ARHGEF40-207ENST00000556399 OS9Q13438 667 aaPredicted RBP18.74■□□□□ 0.59
ARHGEF40-207ENST00000556399 DDX49Q9Y6V7 483 aaKnown RBP18.74■□□□□ 0.59
ARHGEF40-207ENST00000556399 PDE3AQ14432 1141 aa18.74■□□□□ 0.59
ARHGEF40-207ENST00000556399 STAC3Q96MF2 364 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms