RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 CPLX2Q6PUV4 134 aaKnown RBP13.31□□□□□ -0.28
ACTN1-216ENST00000556083 E9PSI1 815 aa13.31□□□□□ -0.28
ACTN1-216ENST00000556083 SENP3Q9H4L4 574 aaPredicted RBP13.3□□□□□ -0.28
ACTN1-216ENST00000556083 MYOM3Q5VTT5 1437 aa13.3□□□□□ -0.28
ACTN1-216ENST00000556083 ISY1Q9ULR0 285 aaKnown RBP13.3□□□□□ -0.28
ACTN1-216ENST00000556083 RUFY2Q8WXA3 655 aa13.29□□□□□ -0.28
ACTN1-216ENST00000556083 COG3Q96JB2 828 aa13.29□□□□□ -0.28
ACTN1-216ENST00000556083 KIF16BQ96L93 1317 aa13.29□□□□□ -0.28
ACTN1-216ENST00000556083 SAFB2Q14151 953 aaKnown RBP eCLIP13.29□□□□□ -0.28
ACTN1-216ENST00000556083 SKOR2Q2VWA4 1001 aaPredicted RBP13.28□□□□□ -0.28
ACTN1-216ENST00000556083 L3MBTL2Q969R5 705 aa13.28□□□□□ -0.28
ACTN1-216ENST00000556083 WASHC2AQ641Q2 1341 aa13.28□□□□□ -0.28
ACTN1-216ENST00000556083 G3V3G9 751 aa13.28□□□□□ -0.28
ACTN1-216ENST00000556083 DCAF8Q5TAQ9 597 aa13.28□□□□□ -0.28
ACTN1-216ENST00000556083 CUX1P39880 1505 aa13.28□□□□□ -0.28
ACTN1-216ENST00000556083 NEXNQ0ZGT2 675 aa13.27□□□□□ -0.28
ACTN1-216ENST00000556083 DDX11L8A8MPP1 907 aa13.27□□□□□ -0.28
ACTN1-216ENST00000556083 C1orf141Q5JVX7 400 aa13.27□□□□□ -0.28
ACTN1-216ENST00000556083 KANK4Q5T7N3 995 aaPredicted RBP13.27□□□□□ -0.28
ACTN1-216ENST00000556083 CENPQQ7L2Z9 268 aaPredicted RBP13.27□□□□□ -0.28
ACTN1-216ENST00000556083 AMOTL1Q8IY63 956 aa13.27□□□□□ -0.28
ACTN1-216ENST00000556083 SOX12O15370 315 aa13.27□□□□□ -0.29
ACTN1-216ENST00000556083 HSP90AB4PQ58FF6 505 aa13.27□□□□□ -0.29
ACTN1-216ENST00000556083 API5Q9BZZ5 524 aaKnown RBP13.26□□□□□ -0.29
ACTN1-216ENST00000556083 HSP90B1P14625 803 aaKnown RBP13.26□□□□□ -0.29
ACTN1-216ENST00000556083 CEP89Q96ST8 783 aa13.26□□□□□ -0.29
ACTN1-216ENST00000556083 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
ACTN1-216ENST00000556083 MIA2Q96PC5 1412 aa13.26□□□□□ -0.29
ACTN1-216ENST00000556083 CLSTN1O94985 981 aa13.25□□□□□ -0.29
ACTN1-216ENST00000556083 DDX58O95786 925 aaKnown RBP13.25□□□□□ -0.29
ACTN1-216ENST00000556083 GTF2E1P29083 439 aaPredicted RBP13.25□□□□□ -0.29
ACTN1-216ENST00000556083 TPM3P06753 285 aa13.25□□□□□ -0.29
ACTN1-216ENST00000556083 FHOD3Q2V2M9 1422 aa13.25□□□□□ -0.29
ACTN1-216ENST00000556083 TULP1O00294 542 aaPredicted RBP13.24□□□□□ -0.29
ACTN1-216ENST00000556083 HNRNPMP52272 730 aaKnown RBP eCLIP13.24□□□□□ -0.29
ACTN1-216ENST00000556083 ZKSCAN2Q63HK3 967 aa13.24□□□□□ -0.29
ACTN1-216ENST00000556083 GOLGA6L1Q8N7Z2 621 aa13.24□□□□□ -0.29
ACTN1-216ENST00000556083 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
ACTN1-216ENST00000556083 TRIM6-TRIM34B2RNG4 842 aa13.23□□□□□ -0.29
ACTN1-216ENST00000556083 SYNE3Q6ZMZ3 975 aa13.23□□□□□ -0.29
ACTN1-216ENST00000556083 REC8O95072 547 aa13.23□□□□□ -0.29
ACTN1-216ENST00000556083 TPM2P07951 284 aa13.23□□□□□ -0.29
ACTN1-216ENST00000556083 NOL10Q9BSC4 688 aaKnown RBP13.23□□□□□ -0.29
ACTN1-216ENST00000556083 SCAPERQ9BY12 1400 aa13.23□□□□□ -0.29
ACTN1-216ENST00000556083 TEFQ10587 303 aa13.23□□□□□ -0.29
ACTN1-216ENST00000556083 CCDC47Q96A33 483 aaKnown RBP13.22□□□□□ -0.29
ACTN1-216ENST00000556083 TPM1P09493 284 aa13.22□□□□□ -0.29
ACTN1-216ENST00000556083 NOC3LQ8WTT2 800 aaKnown RBP13.22□□□□□ -0.29
ACTN1-216ENST00000556083 DDX19BQ9UMR2 479 aa13.22□□□□□ -0.29
ACTN1-216ENST00000556083 SMARCA4P51532 1647 aa13.22□□□□□ -0.29
ACTN1-216ENST00000556083 GOLGA6L3A6NEY3 463 aa13.21□□□□□ -0.29
ACTN1-216ENST00000556083 AKAP17AQ02040 695 aaKnown RBP13.21□□□□□ -0.29
ACTN1-216ENST00000556083 TSR1Q2NL82 804 aaKnown RBP13.21□□□□□ -0.29
ACTN1-216ENST00000556083 RASSF8Q8NHQ8 419 aa13.21□□□□□ -0.29
ACTN1-216ENST00000556083 CCDC9Q9Y3X0 531 aaKnown RBP13.21□□□□□ -0.29
ACTN1-216ENST00000556083 CHMP3Q9Y3E7 222 aa13.21□□□□□ -0.3
ACTN1-216ENST00000556083 SF3A1Q15459 793 aaKnown RBP13.2□□□□□ -0.3
ACTN1-216ENST00000556083 TTC5Q8N0Z6 440 aa13.2□□□□□ -0.3
ACTN1-216ENST00000556083 HOOK1Q9UJC3 728 aaKnown RBP13.2□□□□□ -0.3
ACTN1-216ENST00000556083 FRAT2O75474 233 aaPredicted RBP13.19□□□□□ -0.3
ACTN1-216ENST00000556083 RNF20Q5VTR2 975 aa13.19□□□□□ -0.3
ACTN1-216ENST00000556083 DHX57Q6P158 1386 aaKnown RBP13.19□□□□□ -0.3
ACTN1-216ENST00000556083 ZKSCAN1P17029 563 aaPredicted RBP13.19□□□□□ -0.3
ACTN1-216ENST00000556083 IPO9Q96P70 1041 aaKnown RBP13.19□□□□□ -0.3
ACTN1-216ENST00000556083 ZBED9Q6R2W3 1325 aa13.19□□□□□ -0.3
ACTN1-216ENST00000556083 MARCH6O60337 910 aa13.18□□□□□ -0.3
ACTN1-216ENST00000556083 ZNF330Q9Y3S2 320 aaPredicted RBP13.18□□□□□ -0.3
ACTN1-216ENST00000556083 TPRNQ4KMQ1 711 aa13.17□□□□□ -0.3
ACTN1-216ENST00000556083 CCDC70Q6NSX1 233 aa13.17□□□□□ -0.3
ACTN1-216ENST00000556083 PLEKHH2Q8IVE3 1493 aa13.17□□□□□ -0.3
ACTN1-216ENST00000556083 RBM19Q9Y4C8 960 aaKnown RBP13.17□□□□□ -0.3
ACTN1-216ENST00000556083 ANKRD20A12PQ8NF67 263 aa13.17□□□□□ -0.3
ACTN1-216ENST00000556083 GAPVD1Q14C86 1478 aa13.17□□□□□ -0.3
ACTN1-216ENST00000556083 SLC4A10Q6U841 1118 aa13.16□□□□□ -0.3
ACTN1-216ENST00000556083 DIAPH1O60610 1272 aaKnown RBP13.16□□□□□ -0.3
ACTN1-216ENST00000556083 GNAI1P63096 354 aa13.16□□□□□ -0.3
ACTN1-216ENST00000556083 FAM161AQ3B820 660 aa13.16□□□□□ -0.3
ACTN1-216ENST00000556083 FAM184AQ8NB25 1140 aa13.16□□□□□ -0.3
ACTN1-216ENST00000556083 APBB1O00213 710 aa13.15□□□□□ -0.3
ACTN1-216ENST00000556083 MFAP1P55081 439 aaKnown RBP13.15□□□□□ -0.3
ACTN1-216ENST00000556083 USP47Q96K76 1375 aa13.15□□□□□ -0.3
ACTN1-216ENST00000556083 TRAK1Q9UPV9 953 aa13.15□□□□□ -0.31
ACTN1-216ENST00000556083 TRIM29Q14134 588 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 DIAPH3Q9NSV4 1193 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 H3BQV1 296 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 EVA1CP58658 441 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 IFFO2Q5TF58 517 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 GPS2Q13227 327 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 PANK3Q9H999 370 aa13.14□□□□□ -0.31
ACTN1-216ENST00000556083 ST20-MTHFSA0A0A6YYL1 179 aa13.13□□□□□ -0.31
ACTN1-216ENST00000556083 RRBP1Q9P2E9 1410 aaKnown RBP13.13□□□□□ -0.31
ACTN1-216ENST00000556083 ERC2O15083 957 aa13.13□□□□□ -0.31
ACTN1-216ENST00000556083 TAOK2Q9UL54 1235 aa13.13□□□□□ -0.31
ACTN1-216ENST00000556083 FYCO1Q9BQS8 1478 aa13.13□□□□□ -0.31
ACTN1-216ENST00000556083 HFM1A2PYH4 1435 aa13.13□□□□□ -0.31
ACTN1-216ENST00000556083 IPO7O95373 1038 aaKnown RBP13.12□□□□□ -0.31
ACTN1-216ENST00000556083 TRDNQ13061 729 aa13.12□□□□□ -0.31
ACTN1-216ENST00000556083 FOXD1Q16676 465 aa13.12□□□□□ -0.31
ACTN1-216ENST00000556083 NCAPD3P42695 1498 aa13.12□□□□□ -0.31
ACTN1-216ENST00000556083 GOLGA6L19H0YKK7 550 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms