RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 PLXNC1O60486 1568 aa10.1□□□□□ -0.79
TMEM260-209ENST00000556079 PREX1Q8TCU6 1659 aa10.1□□□□□ -0.79
TMEM260-209ENST00000556079 ZBTB22O15209 634 aa10.1□□□□□ -0.79
TMEM260-209ENST00000556079 ILDR2Q71H61 639 aa10.1□□□□□ -0.79
TMEM260-209ENST00000556079 PLEKHH2Q8IVE3 1493 aa10.1□□□□□ -0.79
TMEM260-209ENST00000556079 STRCQ7RTU9 1775 aa10.09□□□□□ -0.79
TMEM260-209ENST00000556079 AGLP35573 1532 aa10.09□□□□□ -0.79
TMEM260-209ENST00000556079 MAP3K1Q13233 1512 aa10.09□□□□□ -0.79
TMEM260-209ENST00000556079 CLTCQ00610 1675 aaKnown RBP10.09□□□□□ -0.79
TMEM260-209ENST00000556079 UHRF1BP1Q6BDS2 1440 aa10.08□□□□□ -0.8
TMEM260-209ENST00000556079 PPARGC1BQ86YN6 1023 aaKnown RBP10.08□□□□□ -0.8
TMEM260-209ENST00000556079 DISP3Q9P2K9 1392 aa10.08□□□□□ -0.8
TMEM260-209ENST00000556079 A2MP01023 1474 aa10.08□□□□□ -0.8
TMEM260-209ENST00000556079 CCDC141Q6ZP82 1450 aa10.08□□□□□ -0.8
TMEM260-209ENST00000556079 MYOM3Q5VTT5 1437 aa10.07□□□□□ -0.8
TMEM260-209ENST00000556079 ARHGEF5Q12774 1597 aa10.06□□□□□ -0.8
TMEM260-209ENST00000556079 PTPN23Q9H3S7 1636 aa10.06□□□□□ -0.8
TMEM260-209ENST00000556079 CROCC2H7BZ55 1655 aa10.05□□□□□ -0.8
TMEM260-209ENST00000556079 ESF1Q9H501 851 aaKnown RBP10.04□□□□□ -0.8
TMEM260-209ENST00000556079 SETD1BQ9UPS6 1966 aaKnown RBP10.04□□□□□ -0.8
TMEM260-209ENST00000556079 GGT6Q6P531 493 aa10.03□□□□□ -0.8
TMEM260-209ENST00000556079 PTPRTO14522 1441 aa10.02□□□□□ -0.81
TMEM260-209ENST00000556079 FGD6Q6ZV73 1430 aa10.02□□□□□ -0.81
TMEM260-209ENST00000556079 MROH2AA6NES4 1674 aa10.02□□□□□ -0.81
TMEM260-209ENST00000556079 MAST1Q9Y2H9 1570 aa10.01□□□□□ -0.81
TMEM260-209ENST00000556079 RTEL1-TNFRSF6BF6WH68 1400 aa10.01□□□□□ -0.81
TMEM260-209ENST00000556079 SOCS7O14512 581 aa10.01□□□□□ -0.81
TMEM260-209ENST00000556079 LTBP4Q8N2S1 1624 aa10□□□□□ -0.81
TMEM260-209ENST00000556079 MROH1Q8NDA8 1641 aa10□□□□□ -0.81
TMEM260-209ENST00000556079 ABCC5O15440 1437 aa10□□□□□ -0.81
TMEM260-209ENST00000556079 NCOA1Q15788 1441 aa10□□□□□ -0.81
TMEM260-209ENST00000556079 DNMT1P26358 1616 aaKnown RBP10□□□□□ -0.81
TMEM260-209ENST00000556079 DHX29Q7Z478 1369 aaKnown RBP10□□□□□ -0.81
TMEM260-209ENST00000556079 MIA2Q96PC5 1412 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 CEP152O94986 1710 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 TCOF1Q13428 1488 aaKnown RBP9.99□□□□□ -0.81
TMEM260-209ENST00000556079 KIF3BO15066 747 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 CHIC2Q9UKJ5 165 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 NCKAP5LQ9HCH0 1330 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 MYO3AQ8NEV4 1616 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 DAPK1P53355 1430 aa9.99□□□□□ -0.81
TMEM260-209ENST00000556079 CFAP65Q6ZU64 1925 aaKnown RBP9.98□□□□□ -0.81
TMEM260-209ENST00000556079 ATF5Q9Y2D1 282 aaPredicted RBP9.98□□□□□ -0.81
TMEM260-209ENST00000556079 ZMYM3Q14202 1370 aa9.98□□□□□ -0.81
TMEM260-209ENST00000556079 PTPRKQ15262 1439 aa9.98□□□□□ -0.81
TMEM260-209ENST00000556079 CNTLNQ9NXG0 1405 aa9.98□□□□□ -0.81
TMEM260-209ENST00000556079 SPATA31D1Q6ZQQ2 1576 aa9.97□□□□□ -0.81
TMEM260-209ENST00000556079 CAMSAP1Q5T5Y3 1602 aa9.97□□□□□ -0.81
TMEM260-209ENST00000556079 RNF17Q9BXT8 1623 aaKnown RBP9.97□□□□□ -0.81
TMEM260-209ENST00000556079 FBXO31Q5XUX0 539 aaPredicted RBP9.97□□□□□ -0.81
TMEM260-209ENST00000556079 ZNF335Q9H4Z2 1342 aaPredicted RBP9.97□□□□□ -0.81
TMEM260-209ENST00000556079 RRP7BPQ9NSQ0 103 aa9.96□□□□□ -0.82
TMEM260-209ENST00000556079 TSPY4P0CV99 314 aa9.95□□□□□ -0.82
TMEM260-209ENST00000556079 TSPY10P0CW01 314 aa9.95□□□□□ -0.82
TMEM260-209ENST00000556079 POLA2Q14181 598 aa9.95□□□□□ -0.82
TMEM260-209ENST00000556079 FAM50AQ14320 339 aaKnown RBP9.95□□□□□ -0.82
TMEM260-209ENST00000556079 KIF15Q9NS87 1388 aa9.95□□□□□ -0.82
TMEM260-209ENST00000556079 ABCC3O15438 1527 aa9.95□□□□□ -0.82
TMEM260-209ENST00000556079 KDM5DQ9BY66 1539 aa9.95□□□□□ -0.82
TMEM260-209ENST00000556079 ZNF142P52746 1687 aaPredicted RBP9.94□□□□□ -0.82
TMEM260-209ENST00000556079 SHANK2Q9UPX8 1470 aa9.94□□□□□ -0.82
TMEM260-209ENST00000556079 NPATQ14207 1427 aa9.94□□□□□ -0.82
TMEM260-209ENST00000556079 UBAP1LF5GYI3 381 aa9.94□□□□□ -0.82
TMEM260-209ENST00000556079 EIF2AK4Q9P2K8 1649 aaKnown RBP9.93□□□□□ -0.82
TMEM260-209ENST00000556079 CEP170BQ9Y4F5 1589 aaPredicted RBP9.93□□□□□ -0.82
TMEM260-209ENST00000556079 DUOX2Q9NRD8 1548 aa9.93□□□□□ -0.82
TMEM260-209ENST00000556079 IQSEC2Q5JU85 1478 aa9.92□□□□□ -0.82
TMEM260-209ENST00000556079 RSPH4AQ5TD94 716 aa9.91□□□□□ -0.82
TMEM260-209ENST00000556079 PZPP20742 1482 aa9.91□□□□□ -0.82
TMEM260-209ENST00000556079 DEPDC5O75140 1603 aa9.9□□□□□ -0.82
TMEM260-209ENST00000556079 WASHC2CQ9Y4E1 1318 aa9.9□□□□□ -0.82
TMEM260-209ENST00000556079 ITGAEP38570 1179 aa9.9□□□□□ -0.82
TMEM260-209ENST00000556079 PRDM15P57071 1507 aaPredicted RBP9.9□□□□□ -0.82
TMEM260-209ENST00000556079 TNRQ92752 1358 aa9.89□□□□□ -0.83
TMEM260-209ENST00000556079 PKD2Q13563 968 aa9.89□□□□□ -0.83
TMEM260-209ENST00000556079 PLA2R1Q13018 1463 aa9.89□□□□□ -0.83
TMEM260-209ENST00000556079 ZC3H13Q5T200 1668 aaKnown RBP9.89□□□□□ -0.83
TMEM260-209ENST00000556079 ADGRL2O95490 1459 aa9.88□□□□□ -0.83
TMEM260-209ENST00000556079 ERVK-7P63135 1459 aa9.88□□□□□ -0.83
TMEM260-209ENST00000556079 ERBINQ96RT1 1412 aa9.88□□□□□ -0.83
TMEM260-209ENST00000556079 A2ML1A8K2U0 1454 aa9.87□□□□□ -0.83
TMEM260-209ENST00000556079 NEURL4Q96JN8 1562 aa9.87□□□□□ -0.83
TMEM260-209ENST00000556079 ANKRD30AQ9BXX3 1397 aa9.87□□□□□ -0.83
TMEM260-209ENST00000556079 HSPA1LP34931 641 aa9.86□□□□□ -0.83
TMEM260-209ENST00000556079 PIP4K2BP78356 416 aa9.86□□□□□ -0.83
TMEM260-209ENST00000556079 VWDEQ8N2E2 1590 aa9.86□□□□□ -0.83
TMEM260-209ENST00000556079 FAM135AQ9P2D6 1515 aa9.86□□□□□ -0.83
TMEM260-209ENST00000556079 POLR1AO95602 1720 aaPredicted RBP9.85□□□□□ -0.83
TMEM260-209ENST00000556079 SYNMO15061 1565 aa9.84□□□□□ -0.83
TMEM260-209ENST00000556079 PIK3C2BO00750 1634 aa9.84□□□□□ -0.83
TMEM260-209ENST00000556079 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.84□□□□□ -0.83
TMEM260-209ENST00000556079 UBR1Q8IWV7 1749 aa9.84□□□□□ -0.83
TMEM260-209ENST00000556079 ANKRD50Q9ULJ7 1429 aa9.82□□□□□ -0.84
TMEM260-209ENST00000556079 EFCAB6Q5THR3 1501 aa9.82□□□□□ -0.84
TMEM260-209ENST00000556079 MYO5BQ9ULV0 1848 aa9.82□□□□□ -0.84
TMEM260-209ENST00000556079 UNC13BO14795 1591 aa9.82□□□□□ -0.84
TMEM260-209ENST00000556079 UGGT1Q9NYU2 1555 aa9.82□□□□□ -0.84
TMEM260-209ENST00000556079 LMTK2Q8IWU2 1503 aa9.81□□□□□ -0.84
TMEM260-209ENST00000556079 E9PCH4 1651 aa9.8□□□□□ -0.84
TMEM260-209ENST00000556079 NLRP1Q9C000 1473 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms