RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 BRPF1P55201 1214 aaPredicted RBP12.33□□□□□ -0.44
LINC00643-204ENST00000555934 NEUROD2Q15784 382 aa12.33□□□□□ -0.44
LINC00643-204ENST00000555934 RBM33Q96EV2 1170 aaKnown RBP12.33□□□□□ -0.44
LINC00643-204ENST00000555934 PCDHGA10Q9Y5H3 936 aa12.33□□□□□ -0.44
LINC00643-204ENST00000555934 ERBB3P21860 1342 aa12.33□□□□□ -0.44
LINC00643-204ENST00000555934 ZNF454Q8N9F8 522 aa12.31□□□□□ -0.44
LINC00643-204ENST00000555934 EPAS1Q99814 870 aa12.31□□□□□ -0.44
LINC00643-204ENST00000555934 PSDA5PKW4 1024 aaPredicted RBP12.29□□□□□ -0.44
LINC00643-204ENST00000555934 TYW1BQ6NUM6 668 aa12.29□□□□□ -0.44
LINC00643-204ENST00000555934 AK7Q96M32 723 aa12.29□□□□□ -0.44
LINC00643-204ENST00000555934 CDHR5Q9HBB8 845 aa12.29□□□□□ -0.44
LINC00643-204ENST00000555934 MAP3K7O43318 606 aa12.28□□□□□ -0.44
LINC00643-204ENST00000555934 FBXW7Q969H0 707 aa12.28□□□□□ -0.44
LINC00643-204ENST00000555934 FCHSD2O94868 740 aa12.27□□□□□ -0.45
LINC00643-204ENST00000555934 FECHP22830 423 aa12.27□□□□□ -0.45
LINC00643-204ENST00000555934 PPP4R3BQ5MIZ7 849 aa12.27□□□□□ -0.45
LINC00643-204ENST00000555934 EN1Q05925 392 aaPredicted RBP12.26□□□□□ -0.45
LINC00643-204ENST00000555934 VARS2Q5ST30 1063 aaKnown RBP12.26□□□□□ -0.45
LINC00643-204ENST00000555934 ZDHHC16Q969W1 377 aa12.26□□□□□ -0.45
LINC00643-204ENST00000555934 TSR1Q2NL82 804 aaKnown RBP12.25□□□□□ -0.45
LINC00643-204ENST00000555934 ZNF687Q8N1G0 1237 aa12.25□□□□□ -0.45
LINC00643-204ENST00000555934 GNPATO15228 680 aa12.24□□□□□ -0.45
LINC00643-204ENST00000555934 PTGDRQ13258 359 aa12.23□□□□□ -0.45
LINC00643-204ENST00000555934 ADAM33Q9BZ11 813 aa12.23□□□□□ -0.45
LINC00643-204ENST00000555934 TRIM66O15016 1216 aa12.22□□□□□ -0.45
LINC00643-204ENST00000555934 HIC1Q14526 733 aa12.22□□□□□ -0.45
LINC00643-204ENST00000555934 GPBP1L1Q9HC44 474 aaPredicted RBP12.22□□□□□ -0.45
LINC00643-204ENST00000555934 CCDC102AQ96A19 550 aa12.21□□□□□ -0.45
LINC00643-204ENST00000555934 MAP2K5Q13163 448 aa12.2□□□□□ -0.46
LINC00643-204ENST00000555934 MINK1Q8N4C8 1332 aaPredicted RBP12.19□□□□□ -0.46
LINC00643-204ENST00000555934 BCL2L12Q9HB09 334 aa12.19□□□□□ -0.46
LINC00643-204ENST00000555934 IRF6O14896 467 aa12.18□□□□□ -0.46
LINC00643-204ENST00000555934 TMEM132AQ24JP5 1023 aa12.18□□□□□ -0.46
LINC00643-204ENST00000555934 RNF166Q96A37 237 aaPredicted RBP12.18□□□□□ -0.46
LINC00643-204ENST00000555934 NPDC1Q9NQX5 325 aaPredicted RBP12.18□□□□□ -0.46
LINC00643-204ENST00000555934 PDE4DQ08499 809 aa12.17□□□□□ -0.46
LINC00643-204ENST00000555934 C6orf132Q5T0Z8 1188 aa12.17□□□□□ -0.46
LINC00643-204ENST00000555934 PTPREP23469 700 aa12.13□□□□□ -0.47
LINC00643-204ENST00000555934 MYT1LQ9UL68 1186 aa12.13□□□□□ -0.47
LINC00643-204ENST00000555934 KDM4CQ9H3R0 1056 aa12.12□□□□□ -0.47
LINC00643-204ENST00000555934 KCNK17Q96T54 332 aa12.11□□□□□ -0.47
LINC00643-204ENST00000555934 FAM161AQ3B820 660 aa12.1□□□□□ -0.47
LINC00643-204ENST00000555934 POTEEQ6S8J3 1075 aa12.1□□□□□ -0.47
LINC00643-204ENST00000555934 COL9A1P20849 921 aa12.09□□□□□ -0.47
LINC00643-204ENST00000555934 CERKQ8TCT0 537 aa12.09□□□□□ -0.47
LINC00643-204ENST00000555934 PPP1R3GB7ZBB8 358 aa12.08□□□□□ -0.48
LINC00643-204ENST00000555934 PBX2P40425 430 aa12.08□□□□□ -0.48
LINC00643-204ENST00000555934 PADI6Q6TGC4 694 aa12.08□□□□□ -0.48
LINC00643-204ENST00000555934 IL27Q8NEV9 243 aa12.08□□□□□ -0.48
LINC00643-204ENST00000555934 KCNH8Q96L42 1107 aa12.08□□□□□ -0.48
LINC00643-204ENST00000555934 ARHGAP33O14559 1287 aa12.07□□□□□ -0.48
LINC00643-204ENST00000555934 PSEN2P49810 448 aa12.06□□□□□ -0.48
LINC00643-204ENST00000555934 TTLL12Q14166 644 aaPredicted RBP12.06□□□□□ -0.48
LINC00643-204ENST00000555934 AXIN2Q9Y2T1 843 aa12.06□□□□□ -0.48
LINC00643-204ENST00000555934 GTF3C3Q9Y5Q9 886 aa12.06□□□□□ -0.48
LINC00643-204ENST00000555934 PARP9Q8IXQ6 854 aa12.05□□□□□ -0.48
LINC00643-204ENST00000555934 AMHR2Q16671 573 aa12.04□□□□□ -0.48
LINC00643-204ENST00000555934 NLRP7Q8WX94 980 aa12.02□□□□□ -0.49
LINC00643-204ENST00000555934 RBM27Q9P2N5 1060 aaKnown RBP12.02□□□□□ -0.49
LINC00643-204ENST00000555934 PRSS12P56730 875 aa12.01□□□□□ -0.49
LINC00643-204ENST00000555934 DMRTA1Q5VZB9 504 aa12.01□□□□□ -0.49
LINC00643-204ENST00000555934 PHOX2BQ99453 314 aa12.01□□□□□ -0.49
LINC00643-204ENST00000555934 FAM117AQ9C073 453 aa12.01□□□□□ -0.49
LINC00643-204ENST00000555934 CDCA7LQ96GN5 454 aa12□□□□□ -0.49
LINC00643-204ENST00000555934 ZBED2Q9BTP6 218 aa12□□□□□ -0.49
LINC00643-204ENST00000555934 LSM11P83369 360 aaKnown RBP eCLIP11.99□□□□□ -0.49
LINC00643-204ENST00000555934 REPIN1Q9BWE0 567 aaKnown RBP11.99□□□□□ -0.49
LINC00643-204ENST00000555934 MDM2Q00987 491 aaPredicted RBP11.98□□□□□ -0.49
LINC00643-204ENST00000555934 PROX2Q3B8N5 592 aa11.98□□□□□ -0.49
LINC00643-204ENST00000555934 TTC13Q8NBP0 860 aa11.98□□□□□ -0.49
LINC00643-204ENST00000555934 TRIM6-TRIM34B2RNG4 842 aa11.97□□□□□ -0.49
LINC00643-204ENST00000555934 GIGYF2Q6Y7W6 1299 aaKnown RBP11.97□□□□□ -0.49
LINC00643-204ENST00000555934 ANKRD13DQ6ZTN6 518 aa11.97□□□□□ -0.49
LINC00643-204ENST00000555934 TSKSQ9UJT2 592 aa11.97□□□□□ -0.49
LINC00643-204ENST00000555934 ADGRG1Q9Y653 693 aa11.97□□□□□ -0.49
LINC00643-204ENST00000555934 METTL3Q86U44 580 aaKnown RBP11.96□□□□□ -0.49
LINC00643-204ENST00000555934 SLC4A5Q9BY07 1137 aa11.96□□□□□ -0.49
LINC00643-204ENST00000555934 FAM198AQ9UFP1 575 aa11.96□□□□□ -0.49
LINC00643-204ENST00000555934 OATP04181 439 aa11.94□□□□□ -0.5
LINC00643-204ENST00000555934 ONECUT3O60422 494 aaPredicted RBP11.93□□□□□ -0.5
LINC00643-204ENST00000555934 MS4A1P11836 297 aa11.93□□□□□ -0.5
LINC00643-204ENST00000555934 PXYLP1Q8TE99 480 aa11.93□□□□□ -0.5
LINC00643-204ENST00000555934 VPS9D1Q9Y2B5 631 aa11.93□□□□□ -0.5
LINC00643-204ENST00000555934 CLCN1P35523 988 aa11.92□□□□□ -0.5
LINC00643-204ENST00000555934 PLEKHG3A1L390 1219 aa11.91□□□□□ -0.5
LINC00643-204ENST00000555934 TK2O00142 265 aa11.91□□□□□ -0.5
LINC00643-204ENST00000555934 PACS2Q86VP3 889 aa11.91□□□□□ -0.5
LINC00643-204ENST00000555934 GPCPD1Q9NPB8 672 aa11.91□□□□□ -0.5
LINC00643-204ENST00000555934 C3orf80F5H4A9 247 aa11.9□□□□□ -0.5
LINC00643-204ENST00000555934 RABGEF1Q9UJ41 708 aa11.9□□□□□ -0.5
LINC00643-204ENST00000555934 NBPF26B4DH59 902 aa11.89□□□□□ -0.51
LINC00643-204ENST00000555934 ADGRD1Q6QNK2 874 aa11.89□□□□□ -0.51
LINC00643-204ENST00000555934 RBM46Q8TBY0 533 aaKnown RBP11.89□□□□□ -0.51
LINC00643-204ENST00000555934 DDRGK1Q96HY6 314 aa11.89□□□□□ -0.51
LINC00643-204ENST00000555934 KIAA1468Q9P260 1216 aa11.89□□□□□ -0.51
LINC00643-204ENST00000555934 NUDT18Q6ZVK8 323 aa11.88□□□□□ -0.51
LINC00643-204ENST00000555934 TMUB1Q9BVT8 246 aa11.88□□□□□ -0.51
LINC00643-204ENST00000555934 SMAPO00193 183 aa11.87□□□□□ -0.51
LINC00643-204ENST00000555934 SSTR3P32745 418 aaPredicted RBP11.87□□□□□ -0.51
LINC00643-204ENST00000555934 TATDN2Q93075 761 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms