RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 KIAA1468Q9P260 1216 aa11.83□□□□□ -0.52
SCFD1-216ENST00000555550 CAMK2BQ13554 666 aa11.82□□□□□ -0.52
SCFD1-216ENST00000555550 C6orf132Q5T0Z8 1188 aa11.82□□□□□ -0.52
SCFD1-216ENST00000555550 BCAMP50895 628 aa11.81□□□□□ -0.52
SCFD1-216ENST00000555550 IFFO2Q5TF58 517 aa11.81□□□□□ -0.52
SCFD1-216ENST00000555550 RBM33Q96EV2 1170 aaKnown RBP11.81□□□□□ -0.52
SCFD1-216ENST00000555550 ANKK1Q8NFD2 765 aa11.8□□□□□ -0.52
SCFD1-216ENST00000555550 DDX12PQ92771 950 aa11.8□□□□□ -0.52
SCFD1-216ENST00000555550 EPAS1Q99814 870 aa11.78□□□□□ -0.52
SCFD1-216ENST00000555550 SEPT9Q9UHD8 586 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-216ENST00000555550 A0A0G2JS52 829 aa11.77□□□□□ -0.53
SCFD1-216ENST00000555550 ZFRQ96KR1 1074 aaKnown RBP11.76□□□□□ -0.53
SCFD1-216ENST00000555550 LAPTM4BQ86VI4 370 aa11.75□□□□□ -0.53
SCFD1-216ENST00000555550 SOWAHBA6NEL2 793 aa11.74□□□□□ -0.53
SCFD1-216ENST00000555550 BBXQ8WY36 941 aaPredicted RBP11.74□□□□□ -0.53
SCFD1-216ENST00000555550 TRIM6-TRIM34B2RNG4 842 aa11.72□□□□□ -0.53
SCFD1-216ENST00000555550 WBP1LQ9NX94 342 aa11.72□□□□□ -0.53
SCFD1-216ENST00000555550 ONECUT3O60422 494 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-216ENST00000555550 RGS20O76081 388 aa11.71□□□□□ -0.53
SCFD1-216ENST00000555550 NBR1Q14596 966 aa11.68□□□□□ -0.54
SCFD1-216ENST00000555550 TSR1Q2NL82 804 aaKnown RBP11.68□□□□□ -0.54
SCFD1-216ENST00000555550 IRX2Q9BZI1 471 aaPredicted RBP11.68□□□□□ -0.54
SCFD1-216ENST00000555550 ITGBL1O95965 494 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-216ENST00000555550 MAP3K7O43318 606 aa11.66□□□□□ -0.54
SCFD1-216ENST00000555550 FAM98CQ17RN3 349 aaKnown RBP11.66□□□□□ -0.54
SCFD1-216ENST00000555550 SPRYD3Q8NCJ5 442 aa11.66□□□□□ -0.54
SCFD1-216ENST00000555550 TSKSQ9UJT2 592 aa11.65□□□□□ -0.54
SCFD1-216ENST00000555550 EN1Q05925 392 aaPredicted RBP11.64□□□□□ -0.55
SCFD1-216ENST00000555550 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.64□□□□□ -0.55
SCFD1-216ENST00000555550 PDIA6Q15084 440 aa11.63□□□□□ -0.55
SCFD1-216ENST00000555550 HPS5Q9UPZ3 1129 aa11.63□□□□□ -0.55
SCFD1-216ENST00000555550 PACS2Q86VP3 889 aa11.62□□□□□ -0.55
SCFD1-216ENST00000555550 LRCH3Q96II8 777 aa11.62□□□□□ -0.55
SCFD1-216ENST00000555550 SMAPO00193 183 aa11.61□□□□□ -0.55
SCFD1-216ENST00000555550 KCNC4Q03721 635 aa11.61□□□□□ -0.55
SCFD1-216ENST00000555550 NYAP1Q6ZVC0 841 aa11.61□□□□□ -0.55
SCFD1-216ENST00000555550 TSR3Q9UJK0 312 aaKnown RBP11.61□□□□□ -0.55
SCFD1-216ENST00000555550 SPDYE16A6NNV3 312 aaPredicted RBP11.6□□□□□ -0.55
SCFD1-216ENST00000555550 PRIM1P49642 420 aaKnown RBP11.6□□□□□ -0.55
SCFD1-216ENST00000555550 GRXCR2A6NFK2 248 aa11.59□□□□□ -0.55
SCFD1-216ENST00000555550 E2F4Q16254 413 aa11.59□□□□□ -0.55
SCFD1-216ENST00000555550 CDCA7LQ96GN5 454 aa11.58□□□□□ -0.56
SCFD1-216ENST00000555550 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-216ENST00000555550 FAM198AQ9UFP1 575 aa11.58□□□□□ -0.56
SCFD1-216ENST00000555550 C3orf80F5H4A9 247 aa11.57□□□□□ -0.56
SCFD1-216ENST00000555550 CFAP44Q96MT7 982 aa11.57□□□□□ -0.56
SCFD1-216ENST00000555550 PAXIP1Q6ZW49 1069 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-216ENST00000555550 PRSS12P56730 875 aa11.55□□□□□ -0.56
SCFD1-216ENST00000555550 PPP4CP60510 307 aa11.55□□□□□ -0.56
SCFD1-216ENST00000555550 SAMD7Q7Z3H4 446 aa11.54□□□□□ -0.56
SCFD1-216ENST00000555550 WDR70Q9NW82 654 aa11.54□□□□□ -0.56
SCFD1-216ENST00000555550 TATDN2Q93075 761 aa11.51□□□□□ -0.57
SCFD1-216ENST00000555550 PNMA3Q9UL41 463 aa11.5□□□□□ -0.57
SCFD1-216ENST00000555550 OSBPP22059 807 aa11.49□□□□□ -0.57
SCFD1-216ENST00000555550 CDHR5Q9HBB8 845 aa11.49□□□□□ -0.57
SCFD1-216ENST00000555550 ARIH1Q9Y4X5 557 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-216ENST00000555550 TJAP1Q5JTD0 557 aa11.47□□□□□ -0.57
SCFD1-216ENST00000555550 NUDT18Q6ZVK8 323 aa11.47□□□□□ -0.57
SCFD1-216ENST00000555550 CERKQ8TCT0 537 aa11.47□□□□□ -0.57
SCFD1-216ENST00000555550 Q6ZNB5 142 aa11.46□□□□□ -0.57
SCFD1-216ENST00000555550 NBPF26B4DH59 902 aa11.44□□□□□ -0.58
SCFD1-216ENST00000555550 RNF40O75150 1001 aa11.43□□□□□ -0.58
SCFD1-216ENST00000555550 RTN4Q9NQC3 1192 aaKnown RBP11.43□□□□□ -0.58
SCFD1-216ENST00000555550 ZNF516Q92618 1163 aa11.42□□□□□ -0.58
SCFD1-216ENST00000555550 MTRQ99707 1265 aa11.42□□□□□ -0.58
SCFD1-216ENST00000555550 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
SCFD1-216ENST00000555550 HDGFP51858 240 aaKnown RBP11.4□□□□□ -0.58
SCFD1-216ENST00000555550 NPDC1Q9NQX5 325 aaPredicted RBP11.4□□□□□ -0.58
SCFD1-216ENST00000555550 APLP1P51693 650 aa11.38□□□□□ -0.59
SCFD1-216ENST00000555550 PPP1R18Q6NYC8 613 aa11.38□□□□□ -0.59
SCFD1-216ENST00000555550 IL21Q9HBE4 155 aa11.38□□□□□ -0.59
SCFD1-216ENST00000555550 PADI6Q6TGC4 694 aa11.37□□□□□ -0.59
SCFD1-216ENST00000555550 PRKD2Q9BZL6 878 aa11.37□□□□□ -0.59
SCFD1-216ENST00000555550 GFRA3O60609 400 aa11.36□□□□□ -0.59
SCFD1-216ENST00000555550 SWT1Q5T5J6 900 aaKnown RBP11.36□□□□□ -0.59
SCFD1-216ENST00000555550 TTC13Q8NBP0 860 aa11.35□□□□□ -0.59
SCFD1-216ENST00000555550 NKX2-3Q8TAU0 364 aa11.35□□□□□ -0.59
SCFD1-216ENST00000555550 RBM27Q9P2N5 1060 aaKnown RBP11.35□□□□□ -0.59
SCFD1-216ENST00000555550 LCE2BO14633 110 aa11.31□□□□□ -0.6
SCFD1-216ENST00000555550 MLLT3P42568 568 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-216ENST00000555550 COPS2P61201 443 aa11.31□□□□□ -0.6
SCFD1-216ENST00000555550 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.31□□□□□ -0.6
SCFD1-216ENST00000555550 LAPTM4AQ15012 233 aa11.3□□□□□ -0.6
SCFD1-216ENST00000555550 EYA1Q99502 592 aa11.29□□□□□ -0.6
SCFD1-216ENST00000555550 TRAF7Q6Q0C0 670 aa11.28□□□□□ -0.6
SCFD1-216ENST00000555550 TSHZ2Q9NRE2 1034 aa11.28□□□□□ -0.6
SCFD1-216ENST00000555550 SLF2Q8IX21 1173 aa11.27□□□□□ -0.61
SCFD1-216ENST00000555550 V9GY48 417 aaPredicted RBP11.25□□□□□ -0.61
SCFD1-216ENST00000555550 KCNV2Q8TDN2 545 aa11.22□□□□□ -0.61
SCFD1-216ENST00000555550 NECTIN2Q92692 538 aa11.22□□□□□ -0.61
SCFD1-216ENST00000555550 ARHGEF1Q92888 912 aaKnown RBP11.22□□□□□ -0.61
SCFD1-216ENST00000555550 NRG2O14511 850 aaPredicted RBP11.21□□□□□ -0.61
SCFD1-216ENST00000555550 ZPR1O75312 459 aa11.21□□□□□ -0.61
SCFD1-216ENST00000555550 SLC4A3P48751 1232 aa11.2□□□□□ -0.62
SCFD1-216ENST00000555550 FAM161AQ3B820 660 aa11.2□□□□□ -0.62
SCFD1-216ENST00000555550 GGCXP38435 758 aa11.19□□□□□ -0.62
SCFD1-216ENST00000555550 PTGDRQ13258 359 aa11.19□□□□□ -0.62
SCFD1-216ENST00000555550 PCDHB3Q9Y5E6 796 aa11.19□□□□□ -0.62
SCFD1-216ENST00000555550 BLOC1S3Q6QNY0 202 aa11.18□□□□□ -0.62
SCFD1-216ENST00000555550 PDZRN3Q9UPQ7 1066 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms