RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 ARSIQ5FYB1 569 aa11.24□□□□□ -0.61
CKS1BP1-201ENST00000555221 CDHR5Q9HBB8 845 aa11.24□□□□□ -0.61
CKS1BP1-201ENST00000555221 AMHR2Q16671 573 aa11.23□□□□□ -0.61
CKS1BP1-201ENST00000555221 NPDC1Q9NQX5 325 aaPredicted RBP11.23□□□□□ -0.61
CKS1BP1-201ENST00000555221 SNPHO15079 494 aa11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 TSR1Q2NL82 804 aaKnown RBP11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 GPR153Q6NV75 609 aa11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 ERICH6Q7L0X2 663 aa11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 ZNF454Q8N9F8 522 aa11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 CERKQ8TCT0 537 aa11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 ZDHHC16Q969W1 377 aa11.22□□□□□ -0.61
CKS1BP1-201ENST00000555221 C6orf132Q5T0Z8 1188 aa11.19□□□□□ -0.62
CKS1BP1-201ENST00000555221 KHSRPQ92945 711 aaKnown RBP eCLIP11.19□□□□□ -0.62
CKS1BP1-201ENST00000555221 PSDA5PKW4 1024 aaPredicted RBP11.18□□□□□ -0.62
CKS1BP1-201ENST00000555221 TTLL12Q14166 644 aaPredicted RBP11.16□□□□□ -0.62
CKS1BP1-201ENST00000555221 PARP9Q8IXQ6 854 aa11.16□□□□□ -0.62
CKS1BP1-201ENST00000555221 IL27Q8NEV9 243 aa11.16□□□□□ -0.62
CKS1BP1-201ENST00000555221 PPP4R3BQ5MIZ7 849 aa11.15□□□□□ -0.62
CKS1BP1-201ENST00000555221 DDRGK1Q96HY6 314 aa11.14□□□□□ -0.63
CKS1BP1-201ENST00000555221 ADAM33Q9BZ11 813 aa11.14□□□□□ -0.63
CKS1BP1-201ENST00000555221 RBM27Q9P2N5 1060 aaKnown RBP11.14□□□□□ -0.63
CKS1BP1-201ENST00000555221 LHX6Q9UPM6 363 aa11.14□□□□□ -0.63
CKS1BP1-201ENST00000555221 OATP04181 439 aa11.12□□□□□ -0.63
CKS1BP1-201ENST00000555221 HOXB1P14653 301 aaPredicted RBP11.1□□□□□ -0.63
CKS1BP1-201ENST00000555221 CLCN1P35523 988 aa11.1□□□□□ -0.63
CKS1BP1-201ENST00000555221 PADI6Q6TGC4 694 aa11.1□□□□□ -0.63
CKS1BP1-201ENST00000555221 FAM117AQ9C073 453 aa11.1□□□□□ -0.63
CKS1BP1-201ENST00000555221 PRSS12P56730 875 aa11.09□□□□□ -0.63
CKS1BP1-201ENST00000555221 BCL2L12Q9HB09 334 aa11.09□□□□□ -0.63
CKS1BP1-201ENST00000555221 GIGYF2Q6Y7W6 1299 aaKnown RBP11.08□□□□□ -0.64
CKS1BP1-201ENST00000555221 TTC13Q8NBP0 860 aa11.08□□□□□ -0.64
CKS1BP1-201ENST00000555221 TIMELESSQ9UNS1 1208 aa11.08□□□□□ -0.64
CKS1BP1-201ENST00000555221 GPCPD1Q9NPB8 672 aa11.07□□□□□ -0.64
CKS1BP1-201ENST00000555221 ADGRG1Q9Y653 693 aa11.07□□□□□ -0.64
CKS1BP1-201ENST00000555221 PTPREP23469 700 aa11.06□□□□□ -0.64
CKS1BP1-201ENST00000555221 METTL3Q86U44 580 aaKnown RBP11.06□□□□□ -0.64
CKS1BP1-201ENST00000555221 CDCA7LQ96GN5 454 aa11.06□□□□□ -0.64
CKS1BP1-201ENST00000555221 MDM2Q00987 491 aaPredicted RBP11.05□□□□□ -0.64
CKS1BP1-201ENST00000555221 RBM46Q8TBY0 533 aaKnown RBP11.04□□□□□ -0.64
CKS1BP1-201ENST00000555221 OTUD5Q96G74 571 aa11.04□□□□□ -0.64
CKS1BP1-201ENST00000555221 TMUB1Q9BVT8 246 aa11.04□□□□□ -0.64
CKS1BP1-201ENST00000555221 PLEKHG3A1L390 1219 aa11.03□□□□□ -0.64
CKS1BP1-201ENST00000555221 PPP1R3GB7ZBB8 358 aa11.03□□□□□ -0.64
CKS1BP1-201ENST00000555221 PXYLP1Q8TE99 480 aa11.03□□□□□ -0.64
CKS1BP1-201ENST00000555221 PHOX2BQ99453 314 aa11.03□□□□□ -0.64
CKS1BP1-201ENST00000555221 FAM161AQ3B820 660 aa11.02□□□□□ -0.65
CKS1BP1-201ENST00000555221 C14orf37Q86TY3 774 aa11.02□□□□□ -0.65
CKS1BP1-201ENST00000555221 KCNH8Q96L42 1107 aa11.02□□□□□ -0.65
CKS1BP1-201ENST00000555221 REPIN1Q9BWE0 567 aaKnown RBP11.02□□□□□ -0.65
CKS1BP1-201ENST00000555221 MS4A1P11836 297 aa11.01□□□□□ -0.65
CKS1BP1-201ENST00000555221 COL9A1P20849 921 aa11.01□□□□□ -0.65
CKS1BP1-201ENST00000555221 GOPCQ9HD26 462 aa11□□□□□ -0.65
CKS1BP1-201ENST00000555221 SSTR3P32745 418 aaPredicted RBP10.98□□□□□ -0.65
CKS1BP1-201ENST00000555221 LHX8Q68G74 356 aa10.98□□□□□ -0.65
CKS1BP1-201ENST00000555221 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.96□□□□□ -0.65
CKS1BP1-201ENST00000555221 NBPF26B4DH59 902 aa10.96□□□□□ -0.65
CKS1BP1-201ENST00000555221 PACS2Q86VP3 889 aa10.96□□□□□ -0.65
CKS1BP1-201ENST00000555221 FAM217BQ9NTX9 383 aaPredicted RBP10.96□□□□□ -0.65
CKS1BP1-201ENST00000555221 TRIM6-TRIM34B2RNG4 842 aa10.95□□□□□ -0.66
CKS1BP1-201ENST00000555221 KCNK17Q96T54 332 aa10.95□□□□□ -0.66
CKS1BP1-201ENST00000555221 FAM198AQ9UFP1 575 aa10.95□□□□□ -0.66
CKS1BP1-201ENST00000555221 TSKSQ9UJT2 592 aa10.95□□□□□ -0.66
CKS1BP1-201ENST00000555221 ONECUT3O60422 494 aaPredicted RBP10.94□□□□□ -0.66
CKS1BP1-201ENST00000555221 RSPH6AQ9H0K4 717 aa10.94□□□□□ -0.66
CKS1BP1-201ENST00000555221 NLRP7Q8WX94 980 aa10.93□□□□□ -0.66
CKS1BP1-201ENST00000555221 EYA1Q99502 592 aa10.93□□□□□ -0.66
CKS1BP1-201ENST00000555221 BEGAINQ9BUH8 593 aa10.93□□□□□ -0.66
CKS1BP1-201ENST00000555221 RCCD1A6NED2 376 aa10.92□□□□□ -0.66
CKS1BP1-201ENST00000555221 SH3D19Q5HYK7 790 aa10.92□□□□□ -0.66
CKS1BP1-201ENST00000555221 NUDT18Q6ZVK8 323 aa10.92□□□□□ -0.66
CKS1BP1-201ENST00000555221 TATDN2Q93075 761 aa10.92□□□□□ -0.66
CKS1BP1-201ENST00000555221 PCMTD1Q96MG8 357 aaPredicted RBP10.92□□□□□ -0.66
CKS1BP1-201ENST00000555221 ERBB3P21860 1342 aa10.91□□□□□ -0.66
CKS1BP1-201ENST00000555221 PNMA3Q9UL41 463 aa10.91□□□□□ -0.66
CKS1BP1-201ENST00000555221 DNAJB2P25686 324 aa10.9□□□□□ -0.66
CKS1BP1-201ENST00000555221 DIXDC1Q155Q3 683 aa10.88□□□□□ -0.67
CKS1BP1-201ENST00000555221 VARS2Q5ST30 1063 aaKnown RBP10.88□□□□□ -0.67
CKS1BP1-201ENST00000555221 SULF1Q8IWU6 871 aa10.88□□□□□ -0.67
CKS1BP1-201ENST00000555221 ARHGAP33O14559 1287 aa10.87□□□□□ -0.67
CKS1BP1-201ENST00000555221 PROX2Q3B8N5 592 aa10.87□□□□□ -0.67
CKS1BP1-201ENST00000555221 PBX2P40425 430 aa10.86□□□□□ -0.67
CKS1BP1-201ENST00000555221 EMP3P54852 163 aa10.86□□□□□ -0.67
CKS1BP1-201ENST00000555221 SKIV2LQ15477 1246 aaKnown RBP10.86□□□□□ -0.67
CKS1BP1-201ENST00000555221 ZBED2Q9BTP6 218 aa10.86□□□□□ -0.67
CKS1BP1-201ENST00000555221 ST18O60284 1047 aa10.85□□□□□ -0.67
CKS1BP1-201ENST00000555221 SLC4A5Q9BY07 1137 aa10.85□□□□□ -0.67
CKS1BP1-201ENST00000555221 TMEM134Q9H6X4 195 aa10.85□□□□□ -0.67
CKS1BP1-201ENST00000555221 C3orf80F5H4A9 247 aa10.84□□□□□ -0.67
CKS1BP1-201ENST00000555221 PSEN2P49810 448 aa10.84□□□□□ -0.67
CKS1BP1-201ENST00000555221 KIAA1468Q9P260 1216 aa10.84□□□□□ -0.67
CKS1BP1-201ENST00000555221 RABGEF1Q9UJ41 708 aa10.83□□□□□ -0.68
CKS1BP1-201ENST00000555221 SMAPO00193 183 aa10.82□□□□□ -0.68
CKS1BP1-201ENST00000555221 CD46P15529 392 aa10.82□□□□□ -0.68
CKS1BP1-201ENST00000555221 FLIIQ13045 1269 aa10.81□□□□□ -0.68
CKS1BP1-201ENST00000555221 MYSM1Q5VVJ2 828 aa10.81□□□□□ -0.68
CKS1BP1-201ENST00000555221 TBC1D2Q9BYX2 928 aa10.81□□□□□ -0.68
CKS1BP1-201ENST00000555221 ATP1B4Q9UN42 357 aaPredicted RBP10.81□□□□□ -0.68
CKS1BP1-201ENST00000555221 DDX11L8A8MPP1 907 aa10.8□□□□□ -0.68
CKS1BP1-201ENST00000555221 RSPH4AQ5TD94 716 aa10.8□□□□□ -0.68
CKS1BP1-201ENST00000555221 ZNF687Q8N1G0 1237 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms