RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 ITGBL1O95965 494 aaPredicted RBP15.14■□□□□ 0.01
VRK1-203ENST00000555067 CADPS2Q86UW7 1296 aa15.14■□□□□ 0.01
VRK1-203ENST00000555067 ANKK1Q8NFD2 765 aa15.14■□□□□ 0.01
VRK1-203ENST00000555067 LAPTM4BQ86VI4 370 aa15.13■□□□□ 0.01
VRK1-203ENST00000555067 IRX2Q9BZI1 471 aaPredicted RBP15.13■□□□□ 0.01
VRK1-203ENST00000555067 ONECUT3O60422 494 aaPredicted RBP15.1■□□□□ 0.01
VRK1-203ENST00000555067 DCAF8L2P0C7V8 631 aa15.1■□□□□ 0.01
VRK1-203ENST00000555067 SOWAHBA6NEL2 793 aa15.09■□□□□ 0.01
VRK1-203ENST00000555067 CAMK2BQ13554 666 aa15.09■□□□□ 0.01
VRK1-203ENST00000555067 BCAMP50895 628 aa15.08■□□□□ 0
VRK1-203ENST00000555067 KIAA1468Q9P260 1216 aa15.06■□□□□ 0
VRK1-203ENST00000555067 AMER1Q5JTC6 1135 aaPredicted RBP15.05■□□□□ -0
VRK1-203ENST00000555067 ZFRQ96KR1 1074 aaKnown RBP15.05■□□□□ -0
VRK1-203ENST00000555067 EPAS1Q99814 870 aa15.05■□□□□ -0
VRK1-203ENST00000555067 C6orf132Q5T0Z8 1188 aa15.04■□□□□ -0
VRK1-203ENST00000555067 NYAP1Q6ZVC0 841 aa15.04■□□□□ -0
VRK1-203ENST00000555067 TRIM6-TRIM34B2RNG4 842 aa14.98□□□□□ -0.01
VRK1-203ENST00000555067 DPYSL4O14531 572 aa14.98□□□□□ -0.01
VRK1-203ENST00000555067 WBP1LQ9NX94 342 aa14.98□□□□□ -0.01
VRK1-203ENST00000555067 SEPT9Q9UHD8 586 aaPredicted RBP14.98□□□□□ -0.01
VRK1-203ENST00000555067 FAM98CQ17RN3 349 aaKnown RBP14.95□□□□□ -0.02
VRK1-203ENST00000555067 KCNC4Q03721 635 aa14.92□□□□□ -0.02
VRK1-203ENST00000555067 RBM33Q96EV2 1170 aaKnown RBP14.9□□□□□ -0.02
VRK1-203ENST00000555067 DDX12PQ92771 950 aa14.89□□□□□ -0.03
VRK1-203ENST00000555067 TSR3Q9UJK0 312 aaKnown RBP14.89□□□□□ -0.03
VRK1-203ENST00000555067 RTN4Q9NQC3 1192 aaKnown RBP14.88□□□□□ -0.03
VRK1-203ENST00000555067 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.88□□□□□ -0.03
VRK1-203ENST00000555067 EN1Q05925 392 aaPredicted RBP14.86□□□□□ -0.03
VRK1-203ENST00000555067 LRCH3Q96II8 777 aa14.86□□□□□ -0.03
VRK1-203ENST00000555067 HPS5Q9UPZ3 1129 aa14.86□□□□□ -0.03
VRK1-203ENST00000555067 TSKSQ9UJT2 592 aa14.85□□□□□ -0.03
VRK1-203ENST00000555067 PDIA6Q15084 440 aa14.83□□□□□ -0.04
VRK1-203ENST00000555067 TSR1Q2NL82 804 aaKnown RBP14.82□□□□□ -0.04
VRK1-203ENST00000555067 NBR1Q14596 966 aa14.8□□□□□ -0.04
VRK1-203ENST00000555067 PACS2Q86VP3 889 aa14.8□□□□□ -0.04
VRK1-203ENST00000555067 MAP3K7O43318 606 aa14.78□□□□□ -0.04
VRK1-203ENST00000555067 Q6ZNB5 142 aa14.77□□□□□ -0.05
VRK1-203ENST00000555067 BBXQ8WY36 941 aaPredicted RBP14.77□□□□□ -0.05
VRK1-203ENST00000555067 SPDYE16A6NNV3 312 aaPredicted RBP14.75□□□□□ -0.05
VRK1-203ENST00000555067 CDCA7LQ96GN5 454 aa14.73□□□□□ -0.05
VRK1-203ENST00000555067 FAM198AQ9UFP1 575 aa14.73□□□□□ -0.05
VRK1-203ENST00000555067 PPP4CP60510 307 aa14.72□□□□□ -0.05
VRK1-203ENST00000555067 TJAP1Q5JTD0 557 aa14.72□□□□□ -0.05
VRK1-203ENST00000555067 PRSS12P56730 875 aa14.71□□□□□ -0.05
VRK1-203ENST00000555067 PRIM1P49642 420 aaKnown RBP14.7□□□□□ -0.06
VRK1-203ENST00000555067 LAPTM4AQ15012 233 aa14.7□□□□□ -0.06
VRK1-203ENST00000555067 SAMD7Q7Z3H4 446 aa14.7□□□□□ -0.06
VRK1-203ENST00000555067 SMAPO00193 183 aa14.69□□□□□ -0.06
VRK1-203ENST00000555067 CERKQ8TCT0 537 aa14.69□□□□□ -0.06
VRK1-203ENST00000555067 C3orf80F5H4A9 247 aa14.68□□□□□ -0.06
VRK1-203ENST00000555067 ARIH1Q9Y4X5 557 aaPredicted RBP14.68□□□□□ -0.06
VRK1-203ENST00000555067 LCE2BO14633 110 aa14.67□□□□□ -0.06
VRK1-203ENST00000555067 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.65□□□□□ -0.06
VRK1-203ENST00000555067 TATDN2Q93075 761 aa14.64□□□□□ -0.07
VRK1-203ENST00000555067 MTRQ99707 1265 aa14.63□□□□□ -0.07
VRK1-203ENST00000555067 NBPF26B4DH59 902 aa14.62□□□□□ -0.07
VRK1-203ENST00000555067 E2F4Q16254 413 aa14.61□□□□□ -0.07
VRK1-203ENST00000555067 IL21Q9HBE4 155 aa14.61□□□□□ -0.07
VRK1-203ENST00000555067 PNMA3Q9UL41 463 aa14.61□□□□□ -0.07
VRK1-203ENST00000555067 GFRA3O60609 400 aa14.59□□□□□ -0.07
VRK1-203ENST00000555067 SPRYD3Q8NCJ5 442 aa14.59□□□□□ -0.07
VRK1-203ENST00000555067 RBM27Q9P2N5 1060 aaKnown RBP14.59□□□□□ -0.07
VRK1-203ENST00000555067 PRKD2Q9BZL6 878 aa14.58□□□□□ -0.08
VRK1-203ENST00000555067 GRXCR2A6NFK2 248 aa14.57□□□□□ -0.08
VRK1-203ENST00000555067 OSBPP22059 807 aa14.57□□□□□ -0.08
VRK1-203ENST00000555067 PPP1R18Q6NYC8 613 aa14.57□□□□□ -0.08
VRK1-203ENST00000555067 TRAF7Q6Q0C0 670 aa14.57□□□□□ -0.08
VRK1-203ENST00000555067 CDHR5Q9HBB8 845 aa14.57□□□□□ -0.08
VRK1-203ENST00000555067 V9GY48 417 aaPredicted RBP14.56□□□□□ -0.08
VRK1-203ENST00000555067 NUDT18Q6ZVK8 323 aa14.54□□□□□ -0.08
VRK1-203ENST00000555067 ZNF516Q92618 1163 aa14.54□□□□□ -0.08
VRK1-203ENST00000555067 NRG2O14511 850 aaPredicted RBP14.53□□□□□ -0.08
VRK1-203ENST00000555067 APLP1P51693 650 aa14.53□□□□□ -0.08
VRK1-203ENST00000555067 TTC13Q8NBP0 860 aa14.53□□□□□ -0.08
VRK1-203ENST00000555067 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.52□□□□□ -0.09
VRK1-203ENST00000555067 HDGFP51858 240 aaKnown RBP14.47□□□□□ -0.09
VRK1-203ENST00000555067 PAXIP1Q6ZW49 1069 aaPredicted RBP14.47□□□□□ -0.09
VRK1-203ENST00000555067 NPDC1Q9NQX5 325 aaPredicted RBP14.47□□□□□ -0.09
VRK1-203ENST00000555067 NKX2-3Q8TAU0 364 aa14.46□□□□□ -0.09
VRK1-203ENST00000555067 CFAP44Q96MT7 982 aa14.46□□□□□ -0.09
VRK1-203ENST00000555067 RNF40O75150 1001 aa14.45□□□□□ -0.1
VRK1-203ENST00000555067 WDR70Q9NW82 654 aa14.45□□□□□ -0.1
VRK1-203ENST00000555067 NECTIN2Q92692 538 aa14.44□□□□□ -0.1
VRK1-203ENST00000555067 SWT1Q5T5J6 900 aaKnown RBP14.43□□□□□ -0.1
VRK1-203ENST00000555067 PADI6Q6TGC4 694 aa14.42□□□□□ -0.1
VRK1-203ENST00000555067 SLF2Q8IX21 1173 aa14.4□□□□□ -0.1
VRK1-203ENST00000555067 EYA1Q99502 592 aa14.38□□□□□ -0.11
VRK1-203ENST00000555067 COPS2P61201 443 aa14.37□□□□□ -0.11
VRK1-203ENST00000555067 TMUB1Q9BVT8 246 aa14.37□□□□□ -0.11
VRK1-203ENST00000555067 GGCXP38435 758 aa14.36□□□□□ -0.11
VRK1-203ENST00000555067 ZPR1O75312 459 aa14.35□□□□□ -0.11
VRK1-203ENST00000555067 PDZRN3Q9UPQ7 1066 aa14.35□□□□□ -0.11
VRK1-203ENST00000555067 PRR14Q9BWN1 585 aa14.29□□□□□ -0.12
VRK1-203ENST00000555067 SLC4A3P48751 1232 aa14.27□□□□□ -0.13
VRK1-203ENST00000555067 EMID1Q96A84 441 aaPredicted RBP14.27□□□□□ -0.13
VRK1-203ENST00000555067 PCDHB3Q9Y5E6 796 aa14.27□□□□□ -0.13
VRK1-203ENST00000555067 TRIM67Q6ZTA4 783 aa14.26□□□□□ -0.13
VRK1-203ENST00000555067 ZNF787Q6DD87 383 aa14.25□□□□□ -0.13
VRK1-203ENST00000555067 RNF223E7ERA6 249 aa14.24□□□□□ -0.13
VRK1-203ENST00000555067 BLOC1S3Q6QNY0 202 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms