RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
VIPAS39-206ENST00000553888 HSPA5P11021 654 aaKnown RBP18.09■□□□□ 0.49
VIPAS39-206ENST00000553888 PLA2R1Q13018 1463 aa18.07■□□□□ 0.48
VIPAS39-206ENST00000553888 KDM2AQ9Y2K7 1162 aa18.05■□□□□ 0.48
VIPAS39-206ENST00000553888 KIF3BO15066 747 aa18.05■□□□□ 0.48
VIPAS39-206ENST00000553888 RAPGEF3O95398 923 aa18.05■□□□□ 0.48
VIPAS39-206ENST00000553888 CFAP74Q9C0B2 1584 aa18.05■□□□□ 0.48
VIPAS39-206ENST00000553888 ZNF518AQ6AHZ1 1483 aa18.04■□□□□ 0.48
VIPAS39-206ENST00000553888 POGZQ7Z3K3 1410 aa18.03■□□□□ 0.48
VIPAS39-206ENST00000553888 TSPOAP1O95153 1857 aa18.03■□□□□ 0.48
VIPAS39-206ENST00000553888 E9PCH4 1651 aa18.03■□□□□ 0.48
VIPAS39-206ENST00000553888 MAP3K4Q9Y6R4 1608 aa18.03■□□□□ 0.48
VIPAS39-206ENST00000553888 DEPDC5O75140 1603 aa18.02■□□□□ 0.48
VIPAS39-206ENST00000553888 RGL3Q3MIN7 710 aa18.02■□□□□ 0.48
VIPAS39-206ENST00000553888 CCDC144AA2RUR9 1427 aa18.02■□□□□ 0.48
VIPAS39-206ENST00000553888 EIF4G2P78344 907 aaKnown RBP eCLIP18.01■□□□□ 0.47
VIPAS39-206ENST00000553888 DCAF11Q8TEB1 546 aa18.01■□□□□ 0.47
VIPAS39-206ENST00000553888 KDM5CP41229 1560 aa18■□□□□ 0.47
VIPAS39-206ENST00000553888 DHX29Q7Z478 1369 aaKnown RBP18■□□□□ 0.47
VIPAS39-206ENST00000553888 MROH1Q8NDA8 1641 aa18■□□□□ 0.47
VIPAS39-206ENST00000553888 FAM69CQ0P6D2 419 aa17.99■□□□□ 0.47
VIPAS39-206ENST00000553888 C11orf95C9JLR9 678 aaPredicted RBP17.98■□□□□ 0.47
VIPAS39-206ENST00000553888 ABCA6Q8N139 1617 aa17.98■□□□□ 0.47
VIPAS39-206ENST00000553888 HECW2Q9P2P5 1572 aa17.98■□□□□ 0.47
VIPAS39-206ENST00000553888 DIP2BQ9P265 1576 aa17.98■□□□□ 0.47
VIPAS39-206ENST00000553888 WASHC2AQ641Q2 1341 aa17.97■□□□□ 0.47
VIPAS39-206ENST00000553888 ERICH6Q7L0X2 663 aa17.97■□□□□ 0.47
VIPAS39-206ENST00000553888 FRMPD1Q5SYB0 1578 aa17.96■□□□□ 0.47
VIPAS39-206ENST00000553888 NEO1Q92859 1461 aa17.96■□□□□ 0.47
VIPAS39-206ENST00000553888 EIF2AK4Q9P2K8 1649 aaKnown RBP17.96■□□□□ 0.47
VIPAS39-206ENST00000553888 A2MP01023 1474 aa17.95■□□□□ 0.46
VIPAS39-206ENST00000553888 RICTORQ6R327 1708 aa17.95■□□□□ 0.46
VIPAS39-206ENST00000553888 CFAP65Q6ZU64 1925 aaKnown RBP17.95■□□□□ 0.46
VIPAS39-206ENST00000553888 CEP152O94986 1710 aa17.95■□□□□ 0.46
VIPAS39-206ENST00000553888 TET3O43151 1660 aa17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 GLI2P10070 1586 aa17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 VWDEQ8N2E2 1590 aa17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 SPHKAPQ2M3C7 1700 aa17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 ATP10AO60312 1499 aa17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 PRDM15P57071 1507 aaPredicted RBP17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 MLH3Q9UHC1 1453 aa17.94■□□□□ 0.46
VIPAS39-206ENST00000553888 SPATA31E1Q6ZUB1 1445 aa17.93■□□□□ 0.46
VIPAS39-206ENST00000553888 UHRF1BP1Q6BDS2 1440 aa17.93■□□□□ 0.46
VIPAS39-206ENST00000553888 PPRC1Q5VV67 1664 aaKnown RBP17.92■□□□□ 0.46
VIPAS39-206ENST00000553888 KANK1Q14678 1352 aa17.91■□□□□ 0.46
VIPAS39-206ENST00000553888 GGT6Q6P531 493 aa17.91■□□□□ 0.46
VIPAS39-206ENST00000553888 CLTCL1P53675 1640 aa17.9■□□□□ 0.46
VIPAS39-206ENST00000553888 USP47Q96K76 1375 aa17.9■□□□□ 0.46
VIPAS39-206ENST00000553888 RALGAPBQ86X10 1494 aa17.9■□□□□ 0.46
VIPAS39-206ENST00000553888 BCORL1Q5H9F3 1711 aa17.9■□□□□ 0.46
VIPAS39-206ENST00000553888 UGGT1Q9NYU2 1555 aa17.89■□□□□ 0.46
VIPAS39-206ENST00000553888 YEATS2Q9ULM3 1422 aa17.89■□□□□ 0.46
VIPAS39-206ENST00000553888 DIP2CQ9Y2E4 1556 aa17.89■□□□□ 0.45
VIPAS39-206ENST00000553888 RNF17Q9BXT8 1623 aaKnown RBP17.88■□□□□ 0.45
VIPAS39-206ENST00000553888 CARD11Q9BXL7 1154 aa17.88■□□□□ 0.45
VIPAS39-206ENST00000553888 TRPM2O94759 1503 aa17.88■□□□□ 0.45
VIPAS39-206ENST00000553888 KIF13AQ9H1H9 1805 aa17.87■□□□□ 0.45
VIPAS39-206ENST00000553888 PRAG1Q86YV5 1406 aa17.87■□□□□ 0.45
VIPAS39-206ENST00000553888 TRPM1Q7Z4N2 1603 aa17.86■□□□□ 0.45
VIPAS39-206ENST00000553888 CCDC7Q96M83 1385 aa17.86■□□□□ 0.45
VIPAS39-206ENST00000553888 NBPF1Q3BBV0 1214 aa17.86■□□□□ 0.45
VIPAS39-206ENST00000553888 PTPRTO14522 1441 aa17.85■□□□□ 0.45
VIPAS39-206ENST00000553888 EFCAB6Q5THR3 1501 aa17.85■□□□□ 0.45
VIPAS39-206ENST00000553888 DAXXQ9UER7 740 aaPredicted RBP17.85■□□□□ 0.45
VIPAS39-206ENST00000553888 POLR1AO95602 1720 aaPredicted RBP17.85■□□□□ 0.45
VIPAS39-206ENST00000553888 KIF7Q2M1P5 1343 aa17.84■□□□□ 0.45
VIPAS39-206ENST00000553888 ROCK2O75116 1388 aaKnown RBP17.84■□□□□ 0.45
VIPAS39-206ENST00000553888 POLR3GLQ9BT43 218 aa17.83■□□□□ 0.45
VIPAS39-206ENST00000553888 CENPBP07199 599 aaPredicted RBP17.83■□□□□ 0.44
VIPAS39-206ENST00000553888 ANP32CO43423 234 aa17.81■□□□□ 0.44
VIPAS39-206ENST00000553888 ST20-MTHFSA0A0A6YYL1 179 aa17.8■□□□□ 0.44
VIPAS39-206ENST00000553888 MROH2AA6NES4 1674 aa17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 WASHC2CQ9Y4E1 1318 aa17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 ABCC3O15438 1527 aa17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 LMTK2Q8IWU2 1503 aa17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 NPATQ14207 1427 aa17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 SCAF1Q9H7N4 1312 aaKnown RBP17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 CNTLNQ9NXG0 1405 aa17.78■□□□□ 0.44
VIPAS39-206ENST00000553888 SIGLEC1Q9BZZ2 1709 aa17.77■□□□□ 0.44
VIPAS39-206ENST00000553888 KIF1BO60333 1816 aa17.77■□□□□ 0.44
VIPAS39-206ENST00000553888 CAMSAP1Q5T5Y3 1602 aa17.76■□□□□ 0.43
VIPAS39-206ENST00000553888 MADDQ8WXG6 1647 aa17.76■□□□□ 0.43
VIPAS39-206ENST00000553888 COL17A1Q9UMD9 1497 aaPredicted RBP17.75■□□□□ 0.43
VIPAS39-206ENST00000553888 ZMYM4Q5VZL5 1548 aa17.74■□□□□ 0.43
VIPAS39-206ENST00000553888 CNGB1Q14028 1251 aaPredicted RBP17.74■□□□□ 0.43
VIPAS39-206ENST00000553888 CHGAP10645 457 aaKnown RBP17.73■□□□□ 0.43
VIPAS39-206ENST00000553888 GPRASP1Q5JY77 1395 aa17.7■□□□□ 0.42
VIPAS39-206ENST00000553888 IFT172Q9UG01 1749 aa17.68■□□□□ 0.42
VIPAS39-206ENST00000553888 ADGRF5Q8IZF2 1346 aa17.68■□□□□ 0.42
VIPAS39-206ENST00000553888 LAMC1P11047 1609 aa17.68■□□□□ 0.42
VIPAS39-206ENST00000553888 SYNMO15061 1565 aa17.67■□□□□ 0.42
VIPAS39-206ENST00000553888 CCER2I3L3R5 266 aa17.67■□□□□ 0.42
VIPAS39-206ENST00000553888 CCDC184Q52MB2 194 aa17.67■□□□□ 0.42
VIPAS39-206ENST00000553888 MLECQ14165 292 aa17.66■□□□□ 0.42
VIPAS39-206ENST00000553888 ADGRB3O60242 1522 aa17.66■□□□□ 0.42
VIPAS39-206ENST00000553888 ZC3H13Q5T200 1668 aaKnown RBP17.65■□□□□ 0.42
VIPAS39-206ENST00000553888 NUTM2DQ5VT03 806 aaPredicted RBP17.65■□□□□ 0.42
VIPAS39-206ENST00000553888 CFAP70Q5T0N1 1121 aa17.64■□□□□ 0.41
VIPAS39-206ENST00000553888 GTF3C3Q9Y5Q9 886 aa17.64■□□□□ 0.41
VIPAS39-206ENST00000553888 NOS1P29475 1434 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms