RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	PBX2	P40425	430 aa		12.16	□□□□□ -0.46
ATXN3-223	ENST00000553686	TYW1B	Q6NUM6	668 aa		12.15	□□□□□ -0.46
ATXN3-223	ENST00000553686	EPAS1	Q99814	870 aa		12.15	□□□□□ -0.46
ATXN3-223	ENST00000553686	GRXCR2	A6NFK2	248 aa		12.14	□□□□□ -0.47
ATXN3-223	ENST00000553686	ADAM33	Q9BZ11	813 aa		12.14	□□□□□ -0.47
ATXN3-223	ENST00000553686	BCL2L12	Q9HB09	334 aa		12.13	□□□□□ -0.47
ATXN3-223	ENST00000553686	PSEN2	P49810	448 aa		12.12	□□□□□ -0.47
ATXN3-223	ENST00000553686	ANKRD13D	Q6ZTN6	518 aa		12.12	□□□□□ -0.47
ATXN3-223	ENST00000553686	FBXW7	Q969H0	707 aa		12.12	□□□□□ -0.47
ATXN3-223	ENST00000553686	KCNK17	Q96T54	332 aa		12.11	□□□□□ -0.47
ATXN3-223	ENST00000553686	PTPRE	P23469	700 aa		12.1	□□□□□ -0.47
ATXN3-223	ENST00000553686	LSM11	P83369	360 aa	Known RBP eCLIP	12.1	□□□□□ -0.47
ATXN3-223	ENST00000553686	NBR1	Q14596	966 aa		12.1	□□□□□ -0.47
ATXN3-223	ENST00000553686	RBM33	Q96EV2	1170 aa	Known RBP	12.1	□□□□□ -0.47
ATXN3-223	ENST00000553686	KCNH8	Q96L42	1107 aa		12.1	□□□□□ -0.47
ATXN3-223	ENST00000553686	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.08	□□□□□ -0.48
ATXN3-223	ENST00000553686	SEMA3E	O15041	775 aa		12.07	□□□□□ -0.48
ATXN3-223	ENST00000553686	MLLT3	P42568	568 aa	Predicted RBP	12.07	□□□□□ -0.48
ATXN3-223	ENST00000553686	DMRTA1	Q5VZB9	504 aa		12.07	□□□□□ -0.48
ATXN3-223	ENST00000553686	OSBP	P22059	807 aa		12.06	□□□□□ -0.48
ATXN3-223	ENST00000553686	C6orf132	Q5T0Z8	1188 aa		12.06	□□□□□ -0.48
ATXN3-223	ENST00000553686	NCAPD3	P42695	1498 aa		12.05	□□□□□ -0.48
ATXN3-223	ENST00000553686	SPNS2	Q8IVW8	549 aa		12.04	□□□□□ -0.48
ATXN3-223	ENST00000553686	MAP3K7	O43318	606 aa		12.03	□□□□□ -0.48
ATXN3-223	ENST00000553686	PRIM1	P49642	420 aa	Known RBP	12.03	□□□□□ -0.48
ATXN3-223	ENST00000553686	EN1	Q05925	392 aa	Predicted RBP	12.03	□□□□□ -0.48
ATXN3-223	ENST00000553686	SLC24A1	O60721	1099 aa		12.01	□□□□□ -0.49
ATXN3-223	ENST00000553686	COL9A1	P20849	921 aa		12	□□□□□ -0.49
ATXN3-223	ENST00000553686	TSR1	Q2NL82	804 aa	Known RBP	12	□□□□□ -0.49
ATXN3-223	ENST00000553686	PLSCR2	Q9NRY7	297 aa		12	□□□□□ -0.49
ATXN3-223	ENST00000553686	TK2	O00142	265 aa		11.99	□□□□□ -0.49
ATXN3-223	ENST00000553686	ADGRD1	Q6QNK2	874 aa		11.99	□□□□□ -0.49
ATXN3-223	ENST00000553686	TESPA1	A2RU30	521 aa	Predicted RBP	11.98	□□□□□ -0.49
ATXN3-223	ENST00000553686	PPP1R3G	B7ZBB8	358 aa		11.98	□□□□□ -0.49
ATXN3-223	ENST00000553686	ZBED2	Q9BTP6	218 aa		11.97	□□□□□ -0.49
ATXN3-223	ENST00000553686	SLC4A5	Q9BY07	1137 aa		11.97	□□□□□ -0.49
ATXN3-223	ENST00000553686	VPS9D1	Q9Y2B5	631 aa		11.97	□□□□□ -0.49
ATXN3-223	ENST00000553686	SMYD5	Q6GMV2	418 aa		11.96	□□□□□ -0.49
ATXN3-223	ENST00000553686	NES	P48681	1621 aa		11.95	□□□□□ -0.5
ATXN3-223	ENST00000553686	MMRN1	Q13201	1228 aa		11.92	□□□□□ -0.5
ATXN3-223	ENST00000553686	PROX2	Q3B8N5	592 aa		11.92	□□□□□ -0.5
ATXN3-223	ENST00000553686	STAC3	Q96MF2	364 aa		11.92	□□□□□ -0.5
ATXN3-223	ENST00000553686	HR	O43593	1189 aa		11.91	□□□□□ -0.5
ATXN3-223	ENST00000553686	CDHR5	Q9HBB8	845 aa		11.91	□□□□□ -0.5
ATXN3-223	ENST00000553686	CERK	Q8TCT0	537 aa		11.9	□□□□□ -0.5
ATXN3-223	ENST00000553686	PDS5B	Q9NTI5	1447 aa		11.89	□□□□□ -0.51
ATXN3-223	ENST00000553686	NUTM2F	A1L443	756 aa		11.89	□□□□□ -0.51
ATXN3-223	ENST00000553686	MYT1L	Q9UL68	1186 aa		11.89	□□□□□ -0.51
ATXN3-223	ENST00000553686	RBM26	Q5T8P6	1007 aa	Known RBP	11.88	□□□□□ -0.51
ATXN3-223	ENST00000553686	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.88	□□□□□ -0.51
ATXN3-223	ENST00000553686	KIAA1468	Q9P260	1216 aa		11.88	□□□□□ -0.51
ATXN3-223	ENST00000553686	ATAD2B	Q9ULI0	1458 aa		11.88	□□□□□ -0.51
ATXN3-223	ENST00000553686	ONECUT3	O60422	494 aa	Predicted RBP	11.87	□□□□□ -0.51
ATXN3-223	ENST00000553686	PRSS12	P56730	875 aa		11.87	□□□□□ -0.51
ATXN3-223	ENST00000553686	RABGEF1	Q9UJ41	708 aa		11.87	□□□□□ -0.51
ATXN3-223	ENST00000553686	TRIM6-TRIM34	B2RNG4	842 aa		11.86	□□□□□ -0.51
ATXN3-223	ENST00000553686	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.86	□□□□□ -0.51
ATXN3-223	ENST00000553686	CDCA7L	Q96GN5	454 aa		11.86	□□□□□ -0.51
ATXN3-223	ENST00000553686	THOC2	Q8NI27	1593 aa	Known RBP	11.84	□□□□□ -0.51
ATXN3-223	ENST00000553686	TULP1	O00294	542 aa	Predicted RBP	11.84	□□□□□ -0.51
ATXN3-223	ENST00000553686	PACS2	Q86VP3	889 aa		11.84	□□□□□ -0.51
ATXN3-223	ENST00000553686	TSKS	Q9UJT2	592 aa		11.83	□□□□□ -0.52
ATXN3-223	ENST00000553686	PTGDR	Q13258	359 aa		11.82	□□□□□ -0.52
ATXN3-223	ENST00000553686	MRPL50	Q8N5N7	158 aa	Known RBP	11.82	□□□□□ -0.52
ATXN3-223	ENST00000553686	RNF166	Q96A37	237 aa	Predicted RBP	11.82	□□□□□ -0.52
ATXN3-223	ENST00000553686	NBPF3	Q9H094	633 aa		11.82	□□□□□ -0.52
ATXN3-223	ENST00000553686	FAM198A	Q9UFP1	575 aa		11.8	□□□□□ -0.52
ATXN3-223	ENST00000553686	SMARCA2	P51531	1590 aa		11.79	□□□□□ -0.52
ATXN3-223	ENST00000553686	GOLGA8CP	A6NN73	597 aa		11.79	□□□□□ -0.52
ATXN3-223	ENST00000553686	FCHSD2	O94868	740 aa		11.79	□□□□□ -0.52
ATXN3-223	ENST00000553686	HMGXB3	Q12766	1538 aa		11.79	□□□□□ -0.52
ATXN3-223	ENST00000553686	LAMC3	Q9Y6N6	1575 aa		11.77	□□□□□ -0.53
ATXN3-223	ENST00000553686	PADI6	Q6TGC4	694 aa		11.77	□□□□□ -0.53
ATXN3-223	ENST00000553686	RBM27	Q9P2N5	1060 aa	Known RBP	11.77	□□□□□ -0.53
ATXN3-223	ENST00000553686	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.77	□□□□□ -0.53
ATXN3-223	ENST00000553686	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
ATXN3-223	ENST00000553686	LAPTM4B	Q86VI4	370 aa		11.76	□□□□□ -0.53
ATXN3-223	ENST00000553686	TTC13	Q8NBP0	860 aa		11.76	□□□□□ -0.53
ATXN3-223	ENST00000553686	TATDN2	Q93075	761 aa		11.75	□□□□□ -0.53
ATXN3-223	ENST00000553686	KCTD12	Q96CX2	325 aa	Known RBP	11.75	□□□□□ -0.53
ATXN3-223	ENST00000553686	C3orf80	F5H4A9	247 aa		11.74	□□□□□ -0.53
ATXN3-223	ENST00000553686	SMAP	O00193	183 aa		11.74	□□□□□ -0.53
ATXN3-223	ENST00000553686	CYB5RL	Q6IPT4	315 aa		11.74	□□□□□ -0.53
ATXN3-223	ENST00000553686	GPIHBP1	Q8IV16	184 aa		11.74	□□□□□ -0.53
ATXN3-223	ENST00000553686	PNMA3	Q9UL41	463 aa		11.74	□□□□□ -0.53
ATXN3-223	ENST00000553686	NUDT18	Q6ZVK8	323 aa		11.73	□□□□□ -0.53
ATXN3-223	ENST00000553686	MRC2	Q9UBG0	1479 aa		11.72	□□□□□ -0.53
ATXN3-223	ENST00000553686	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.72	□□□□□ -0.53
ATXN3-223	ENST00000553686	HIC1	Q14526	733 aa		11.72	□□□□□ -0.53
ATXN3-223	ENST00000553686	FAM98C	Q17RN3	349 aa	Known RBP	11.72	□□□□□ -0.53
ATXN3-223	ENST00000553686	WNT2B	Q93097	391 aa		11.72	□□□□□ -0.53
ATXN3-223	ENST00000553686	NBPF26	B4DH59	902 aa		11.71	□□□□□ -0.53
ATXN3-223	ENST00000553686	ZFR	Q96KR1	1074 aa	Known RBP	11.71	□□□□□ -0.53
ATXN3-223	ENST00000553686	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.7	□□□□□ -0.54
ATXN3-223	ENST00000553686	CADPS	Q9ULU8	1353 aa		11.69	□□□□□ -0.54
ATXN3-223	ENST00000553686	GNPAT	O15228	680 aa		11.69	□□□□□ -0.54
ATXN3-223	ENST00000553686	GPR37	O15354	613 aa		11.69	□□□□□ -0.54
ATXN3-223	ENST00000553686	LMOD2	Q6P5Q4	547 aa		11.68	□□□□□ -0.54
ATXN3-223	ENST00000553686	ANKK1	Q8NFD2	765 aa		11.68	□□□□□ -0.54
ATXN3-223	ENST00000553686	FECH	P22830	423 aa		11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms