RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PHF14O94880 888 aa10.53□□□□□ -0.72
SCFD1-209ENST00000553280 PTGER2P43116 358 aa10.53□□□□□ -0.72
SCFD1-209ENST00000553280 PDIA6Q15084 440 aa10.52□□□□□ -0.73
SCFD1-209ENST00000553280 TYW1BQ6NUM6 668 aa10.52□□□□□ -0.73
SCFD1-209ENST00000553280 ARHGEF1Q92888 912 aaKnown RBP10.52□□□□□ -0.73
SCFD1-209ENST00000553280 TK2O00142 265 aa10.51□□□□□ -0.73
SCFD1-209ENST00000553280 LMOD2Q6P5Q4 547 aa10.51□□□□□ -0.73
SCFD1-209ENST00000553280 RBM33Q96EV2 1170 aaKnown RBP10.5□□□□□ -0.73
SCFD1-209ENST00000553280 FBXW7Q969H0 707 aa10.49□□□□□ -0.73
SCFD1-209ENST00000553280 SPDYE16A6NNV3 312 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-209ENST00000553280 HRO43593 1189 aa10.48□□□□□ -0.73
SCFD1-209ENST00000553280 VPS9D1Q9Y2B5 631 aa10.48□□□□□ -0.73
SCFD1-209ENST00000553280 EPAS1Q99814 870 aa10.47□□□□□ -0.73
SCFD1-209ENST00000553280 ZBED2Q9BTP6 218 aa10.47□□□□□ -0.73
SCFD1-209ENST00000553280 ARIH1Q9Y4X5 557 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-209ENST00000553280 TULP1O00294 542 aaPredicted RBP10.46□□□□□ -0.73
SCFD1-209ENST00000553280 COL9A1P20849 921 aa10.46□□□□□ -0.73
SCFD1-209ENST00000553280 GRXCR2A6NFK2 248 aa10.45□□□□□ -0.74
SCFD1-209ENST00000553280 STAC3Q96MF2 364 aa10.45□□□□□ -0.74
SCFD1-209ENST00000553280 TMEM132AQ24JP5 1023 aa10.44□□□□□ -0.74
SCFD1-209ENST00000553280 C6orf132Q5T0Z8 1188 aa10.44□□□□□ -0.74
SCFD1-209ENST00000553280 PPP1R3GB7ZBB8 358 aa10.43□□□□□ -0.74
SCFD1-209ENST00000553280 PROX2Q3B8N5 592 aa10.43□□□□□ -0.74
SCFD1-209ENST00000553280 SLC4A5Q9BY07 1137 aa10.43□□□□□ -0.74
SCFD1-209ENST00000553280 GTF3C3Q9Y5Q9 886 aa10.43□□□□□ -0.74
SCFD1-209ENST00000553280 MAP3K7O43318 606 aa10.41□□□□□ -0.74
SCFD1-209ENST00000553280 TSR1Q2NL82 804 aaKnown RBP10.41□□□□□ -0.74
SCFD1-209ENST00000553280 TESPA1A2RU30 521 aaPredicted RBP10.4□□□□□ -0.74
SCFD1-209ENST00000553280 EN1Q05925 392 aaPredicted RBP10.4□□□□□ -0.74
SCFD1-209ENST00000553280 PRIM1P49642 420 aaKnown RBP10.39□□□□□ -0.75
SCFD1-209ENST00000553280 KCTD12Q96CX2 325 aaKnown RBP10.39□□□□□ -0.75
SCFD1-209ENST00000553280 BHMG1C9JSJ3 638 aaPredicted RBP10.38□□□□□ -0.75
SCFD1-209ENST00000553280 SEMA3EO15041 775 aa10.38□□□□□ -0.75
SCFD1-209ENST00000553280 MRPL50Q8N5N7 158 aaKnown RBP10.36□□□□□ -0.75
SCFD1-209ENST00000553280 ZC3H15Q8WU90 426 aaKnown RBP10.36□□□□□ -0.75
SCFD1-209ENST00000553280 OSBPP22059 807 aa10.35□□□□□ -0.75
SCFD1-209ENST00000553280 TIMELESSQ9UNS1 1208 aa10.35□□□□□ -0.75
SCFD1-209ENST00000553280 GOLGA8CPA6NN73 597 aa10.34□□□□□ -0.75
SCFD1-209ENST00000553280 MLLT3P42568 568 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-209ENST00000553280 ERICH6Q7L0X2 663 aa10.34□□□□□ -0.75
SCFD1-209ENST00000553280 NBPF3Q9H094 633 aa10.34□□□□□ -0.75
SCFD1-209ENST00000553280 RABGEF1Q9UJ41 708 aa10.34□□□□□ -0.75
SCFD1-209ENST00000553280 CDHR5Q9HBB8 845 aa10.33□□□□□ -0.76
SCFD1-209ENST00000553280 KIAA1468Q9P260 1216 aa10.33□□□□□ -0.76
SCFD1-209ENST00000553280 TRIM6-TRIM34B2RNG4 842 aa10.31□□□□□ -0.76
SCFD1-209ENST00000553280 SMYD5Q6GMV2 418 aa10.31□□□□□ -0.76
SCFD1-209ENST00000553280 HCSTQ9UBK5 93 aa10.31□□□□□ -0.76
SCFD1-209ENST00000553280 PTPN5P54829 565 aa10.3□□□□□ -0.76
SCFD1-209ENST00000553280 WNT2BQ93097 391 aa10.3□□□□□ -0.76
SCFD1-209ENST00000553280 SEPT9Q9UHD8 586 aaPredicted RBP10.3□□□□□ -0.76
SCFD1-209ENST00000553280 BRPF1P55201 1214 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-209ENST00000553280 TSKSQ9UJT2 592 aa10.28□□□□□ -0.76
SCFD1-209ENST00000553280 ONECUT3O60422 494 aaPredicted RBP10.27□□□□□ -0.77
SCFD1-209ENST00000553280 CDCA7LQ96GN5 454 aa10.27□□□□□ -0.77
SCFD1-209ENST00000553280 THSD4Q6ZMP0 1018 aa10.26□□□□□ -0.77
SCFD1-209ENST00000553280 ZMYND10O75800 440 aa10.25□□□□□ -0.77
SCFD1-209ENST00000553280 PRSS12P56730 875 aa10.25□□□□□ -0.77
SCFD1-209ENST00000553280 PACS2Q86VP3 889 aa10.24□□□□□ -0.77
SCFD1-209ENST00000553280 CERKQ8TCT0 537 aa10.24□□□□□ -0.77
SCFD1-209ENST00000553280 SLC24A3Q9HC58 644 aa10.24□□□□□ -0.77
SCFD1-209ENST00000553280 FAM198AQ9UFP1 575 aa10.24□□□□□ -0.77
SCFD1-209ENST00000553280 SMAPO00193 183 aa10.23□□□□□ -0.77
SCFD1-209ENST00000553280 LAPTM4BQ86VI4 370 aa10.23□□□□□ -0.77
SCFD1-209ENST00000553280 ANKK1Q8NFD2 765 aa10.23□□□□□ -0.77
SCFD1-209ENST00000553280 ZFRQ96KR1 1074 aaKnown RBP10.23□□□□□ -0.77
SCFD1-209ENST00000553280 BCAMP50895 628 aa10.22□□□□□ -0.77
SCFD1-209ENST00000553280 NPDC1Q9NQX5 325 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-209ENST00000553280 C3orf80F5H4A9 247 aa10.21□□□□□ -0.77
SCFD1-209ENST00000553280 NEUROD2Q15784 382 aa10.2□□□□□ -0.78
SCFD1-209ENST00000553280 FAM98CQ17RN3 349 aaKnown RBP10.2□□□□□ -0.78
SCFD1-209ENST00000553280 PADI6Q6TGC4 694 aa10.19□□□□□ -0.78
SCFD1-209ENST00000553280 BARGINQ6ZT62 677 aa10.19□□□□□ -0.78
SCFD1-209ENST00000553280 PLA2G2EQ9NZK7 142 aa10.19□□□□□ -0.78
SCFD1-209ENST00000553280 PNMA3Q9UL41 463 aa10.19□□□□□ -0.78
SCFD1-209ENST00000553280 NUTM2FA1L443 756 aa10.17□□□□□ -0.78
SCFD1-209ENST00000553280 SOWAHBA6NEL2 793 aa10.17□□□□□ -0.78
SCFD1-209ENST00000553280 TATDN2Q93075 761 aa10.17□□□□□ -0.78
SCFD1-209ENST00000553280 NBPF26B4DH59 902 aa10.16□□□□□ -0.78
SCFD1-209ENST00000553280 NUDT18Q6ZVK8 323 aa10.16□□□□□ -0.78
SCFD1-209ENST00000553280 RBM27Q9P2N5 1060 aaKnown RBP10.15□□□□□ -0.78
SCFD1-209ENST00000553280 PTGDRQ13258 359 aa10.14□□□□□ -0.79
SCFD1-209ENST00000553280 LRCH3Q96II8 777 aa10.14□□□□□ -0.79
SCFD1-209ENST00000553280 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.14□□□□□ -0.79
SCFD1-209ENST00000553280 RBM26Q5T8P6 1007 aaKnown RBP10.13□□□□□ -0.79
SCFD1-209ENST00000553280 TTC13Q8NBP0 860 aa10.13□□□□□ -0.79
SCFD1-209ENST00000553280 SAMD7Q7Z3H4 446 aa10.12□□□□□ -0.79
SCFD1-209ENST00000553280 WBP1LQ9NX94 342 aa10.12□□□□□ -0.79
SCFD1-209ENST00000553280 C14orf37Q86TY3 774 aa10.11□□□□□ -0.79
SCFD1-209ENST00000553280 AK7Q96M32 723 aa10.11□□□□□ -0.79
SCFD1-209ENST00000553280 HPS5Q9UPZ3 1129 aa10.11□□□□□ -0.79
SCFD1-209ENST00000553280 GPIHBP1Q8IV16 184 aa10.1□□□□□ -0.79
SCFD1-209ENST00000553280 TSR3Q9UJK0 312 aaKnown RBP10.09□□□□□ -0.79
SCFD1-209ENST00000553280 RNF40O75150 1001 aa10.08□□□□□ -0.8
SCFD1-209ENST00000553280 FCHSD2O94868 740 aa10.07□□□□□ -0.8
SCFD1-209ENST00000553280 FAM161AQ3B820 660 aa10.07□□□□□ -0.8
SCFD1-209ENST00000553280 KRI1Q8N9T8 703 aaKnown RBP10.07□□□□□ -0.8
SCFD1-209ENST00000553280 PPP4CP60510 307 aa10.06□□□□□ -0.8
SCFD1-209ENST00000553280 EYA1Q99502 592 aa10.05□□□□□ -0.8
SCFD1-209ENST00000553280 HDGFP51858 240 aaKnown RBP10.04□□□□□ -0.8
SCFD1-209ENST00000553280 SWT1Q5T5J6 900 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms