RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 GOLGA8CPA6NN73 597 aa11.99□□□□□ -0.49
VPS29-210ENST00000552130 A0A0G2JS52 829 aa11.98□□□□□ -0.49
VPS29-210ENST00000552130 COL9A1P20849 921 aa11.98□□□□□ -0.49
VPS29-210ENST00000552130 PHF14O94880 888 aa11.97□□□□□ -0.49
VPS29-210ENST00000552130 CAMK2BQ13554 666 aa11.96□□□□□ -0.49
VPS29-210ENST00000552130 PROX2Q3B8N5 592 aa11.96□□□□□ -0.49
VPS29-210ENST00000552130 FBXW7Q969H0 707 aa11.96□□□□□ -0.49
VPS29-210ENST00000552130 TYW1BQ6NUM6 668 aa11.95□□□□□ -0.5
VPS29-210ENST00000552130 ONECUT3O60422 494 aaPredicted RBP11.92□□□□□ -0.5
VPS29-210ENST00000552130 ITGBL1O95965 494 aaPredicted RBP11.92□□□□□ -0.5
VPS29-210ENST00000552130 LAPTM4BQ86VI4 370 aa11.92□□□□□ -0.5
VPS29-210ENST00000552130 PLCB2Q00722 1185 aa11.91□□□□□ -0.5
VPS29-210ENST00000552130 ARXQ96QS3 562 aa11.91□□□□□ -0.5
VPS29-210ENST00000552130 ANKK1Q8NFD2 765 aa11.89□□□□□ -0.51
VPS29-210ENST00000552130 SOWAHBA6NEL2 793 aa11.88□□□□□ -0.51
VPS29-210ENST00000552130 EPAS1Q99814 870 aa11.88□□□□□ -0.51
VPS29-210ENST00000552130 C6orf132Q5T0Z8 1188 aa11.87□□□□□ -0.51
VPS29-210ENST00000552130 KIAA1468Q9P260 1216 aa11.86□□□□□ -0.51
VPS29-210ENST00000552130 BCAMP50895 628 aa11.85□□□□□ -0.51
VPS29-210ENST00000552130 ZFRQ96KR1 1074 aaKnown RBP11.85□□□□□ -0.51
VPS29-210ENST00000552130 DPYSL4O14531 572 aa11.83□□□□□ -0.52
VPS29-210ENST00000552130 NYAP1Q6ZVC0 841 aa11.83□□□□□ -0.52
VPS29-210ENST00000552130 IRX2Q9BZI1 471 aaPredicted RBP11.83□□□□□ -0.52
VPS29-210ENST00000552130 TRIM6-TRIM34B2RNG4 842 aa11.81□□□□□ -0.52
VPS29-210ENST00000552130 DCAF8L2P0C7V8 631 aa11.79□□□□□ -0.52
VPS29-210ENST00000552130 WBP1LQ9NX94 342 aa11.79□□□□□ -0.52
VPS29-210ENST00000552130 TIMELESSQ9UNS1 1208 aa11.79□□□□□ -0.52
VPS29-210ENST00000552130 SEPT9Q9UHD8 586 aaPredicted RBP11.78□□□□□ -0.52
VPS29-210ENST00000552130 HAP1P54257 671 aaPredicted RBP11.77□□□□□ -0.53
VPS29-210ENST00000552130 FAM98CQ17RN3 349 aaKnown RBP11.77□□□□□ -0.53
VPS29-210ENST00000552130 TPRNQ4KMQ1 711 aa11.77□□□□□ -0.53
VPS29-210ENST00000552130 PDIA6Q15084 440 aa11.74□□□□□ -0.53
VPS29-210ENST00000552130 DDX12PQ92771 950 aa11.74□□□□□ -0.53
VPS29-210ENST00000552130 EN1Q05925 392 aaPredicted RBP11.73□□□□□ -0.53
VPS29-210ENST00000552130 RBM33Q96EV2 1170 aaKnown RBP11.73□□□□□ -0.53
VPS29-210ENST00000552130 TSR3Q9UJK0 312 aaKnown RBP11.72□□□□□ -0.53
VPS29-210ENST00000552130 TSKSQ9UJT2 592 aa11.72□□□□□ -0.53
VPS29-210ENST00000552130 KCNC4Q03721 635 aa11.71□□□□□ -0.53
VPS29-210ENST00000552130 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.7□□□□□ -0.54
VPS29-210ENST00000552130 TSR1Q2NL82 804 aaKnown RBP11.69□□□□□ -0.54
VPS29-210ENST00000552130 BBXQ8WY36 941 aaPredicted RBP11.69□□□□□ -0.54
VPS29-210ENST00000552130 LRCH3Q96II8 777 aa11.68□□□□□ -0.54
VPS29-210ENST00000552130 HPS5Q9UPZ3 1129 aa11.68□□□□□ -0.54
VPS29-210ENST00000552130 TULP1O00294 542 aaPredicted RBP11.67□□□□□ -0.54
VPS29-210ENST00000552130 NBR1Q14596 966 aa11.67□□□□□ -0.54
VPS29-210ENST00000552130 SPDYE16A6NNV3 312 aaPredicted RBP11.66□□□□□ -0.54
VPS29-210ENST00000552130 PACS2Q86VP3 889 aa11.65□□□□□ -0.54
VPS29-210ENST00000552130 ARIH1Q9Y4X5 557 aaPredicted RBP11.65□□□□□ -0.54
VPS29-210ENST00000552130 MAP3K7O43318 606 aa11.64□□□□□ -0.55
VPS29-210ENST00000552130 PRIM1P49642 420 aaKnown RBP11.64□□□□□ -0.55
VPS29-210ENST00000552130 FAM198AQ9UFP1 575 aa11.64□□□□□ -0.55
VPS29-210ENST00000552130 CDCA7LQ96GN5 454 aa11.62□□□□□ -0.55
VPS29-210ENST00000552130 PRSS12P56730 875 aa11.61□□□□□ -0.55
VPS29-210ENST00000552130 C3orf80F5H4A9 247 aa11.6□□□□□ -0.55
VPS29-210ENST00000552130 TJAP1Q5JTD0 557 aa11.6□□□□□ -0.55
VPS29-210ENST00000552130 VSIG10Q8N0Z9 540 aa11.59□□□□□ -0.55
VPS29-210ENST00000552130 CERKQ8TCT0 537 aa11.59□□□□□ -0.55
VPS29-210ENST00000552130 SMAPO00193 183 aa11.57□□□□□ -0.56
VPS29-210ENST00000552130 PPP4CP60510 307 aa11.57□□□□□ -0.56
VPS29-210ENST00000552130 SAMD7Q7Z3H4 446 aa11.57□□□□□ -0.56
VPS29-210ENST00000552130 HOMEZQ8IX15 550 aa11.57□□□□□ -0.56
VPS29-210ENST00000552130 E2F4Q16254 413 aa11.56□□□□□ -0.56
VPS29-210ENST00000552130 Q6ZNB5 142 aa11.55□□□□□ -0.56
VPS29-210ENST00000552130 LCE2BO14633 110 aa11.54□□□□□ -0.56
VPS29-210ENST00000552130 OSBPP22059 807 aa11.54□□□□□ -0.56
VPS29-210ENST00000552130 SPRYD3Q8NCJ5 442 aa11.54□□□□□ -0.56
VPS29-210ENST00000552130 TATDN2Q93075 761 aa11.54□□□□□ -0.56
VPS29-210ENST00000552130 RBM27Q9P2N5 1060 aaKnown RBP11.53□□□□□ -0.56
VPS29-210ENST00000552130 LAPTM4AQ15012 233 aa11.52□□□□□ -0.57
VPS29-210ENST00000552130 NBPF26B4DH59 902 aa11.51□□□□□ -0.57
VPS29-210ENST00000552130 MTRQ99707 1265 aa11.51□□□□□ -0.57
VPS29-210ENST00000552130 ERICH6Q7L0X2 663 aa11.5□□□□□ -0.57
VPS29-210ENST00000552130 TTC13Q8NBP0 860 aa11.5□□□□□ -0.57
VPS29-210ENST00000552130 CDHR5Q9HBB8 845 aa11.5□□□□□ -0.57
VPS29-210ENST00000552130 PNMA3Q9UL41 463 aa11.5□□□□□ -0.57
VPS29-210ENST00000552130 GRXCR2A6NFK2 248 aa11.49□□□□□ -0.57
VPS29-210ENST00000552130 IL21Q9HBE4 155 aa11.49□□□□□ -0.57
VPS29-210ENST00000552130 GTF3C3Q9Y5Q9 886 aa11.48□□□□□ -0.57
VPS29-210ENST00000552130 PPP1R18Q6NYC8 613 aa11.46□□□□□ -0.57
VPS29-210ENST00000552130 NUDT18Q6ZVK8 323 aa11.46□□□□□ -0.57
VPS29-210ENST00000552130 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.57
VPS29-210ENST00000552130 APLP1P51693 650 aa11.45□□□□□ -0.58
VPS29-210ENST00000552130 ZNF516Q92618 1163 aa11.45□□□□□ -0.58
VPS29-210ENST00000552130 GFRA3O60609 400 aa11.44□□□□□ -0.58
VPS29-210ENST00000552130 PRKD2Q9BZL6 878 aa11.44□□□□□ -0.58
VPS29-210ENST00000552130 V9GY48 417 aaPredicted RBP11.44□□□□□ -0.58
VPS29-210ENST00000552130 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.43□□□□□ -0.58
VPS29-210ENST00000552130 TRAF7Q6Q0C0 670 aa11.41□□□□□ -0.58
VPS29-210ENST00000552130 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.41□□□□□ -0.58
VPS29-210ENST00000552130 WDR70Q9NW82 654 aa11.41□□□□□ -0.58
VPS29-210ENST00000552130 NRG2O14511 850 aaPredicted RBP11.4□□□□□ -0.58
VPS29-210ENST00000552130 RANGAP1P46060 587 aaPredicted RBP11.4□□□□□ -0.58
VPS29-210ENST00000552130 HDGFP51858 240 aaKnown RBP11.38□□□□□ -0.59
VPS29-210ENST00000552130 PADI6Q6TGC4 694 aa11.38□□□□□ -0.59
VPS29-210ENST00000552130 SWT1Q5T5J6 900 aaKnown RBP11.37□□□□□ -0.59
VPS29-210ENST00000552130 NKX2-3Q8TAU0 364 aa11.37□□□□□ -0.59
VPS29-210ENST00000552130 EYA1Q99502 592 aa11.37□□□□□ -0.59
VPS29-210ENST00000552130 NECTIN2Q92692 538 aa11.36□□□□□ -0.59
VPS29-210ENST00000552130 PAXIP1Q6ZW49 1069 aaPredicted RBP11.35□□□□□ -0.59
VPS29-210ENST00000552130 SLF2Q8IX21 1173 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms