RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 PCDHGA10Q9Y5H3 936 aa6.65□□□□□ -1.34
PTCH1-223ENST00000551623 KIAA1468Q9P260 1216 aa6.64□□□□□ -1.35
PTCH1-223ENST00000551623 MAP3K9P80192 1104 aa6.63□□□□□ -1.35
PTCH1-223ENST00000551623 NCKAP5LQ9HCH0 1330 aa6.63□□□□□ -1.35
PTCH1-223ENST00000551623 ONECUT3O60422 494 aaPredicted RBP6.62□□□□□ -1.35
PTCH1-223ENST00000551623 PDE4AP27815 886 aa6.62□□□□□ -1.35
PTCH1-223ENST00000551623 ZNF787Q6DD87 383 aa6.62□□□□□ -1.35
PTCH1-223ENST00000551623 PRKD2Q9BZL6 878 aa6.62□□□□□ -1.35
PTCH1-223ENST00000551623 SEPT9Q9UHD8 586 aaPredicted RBP6.62□□□□□ -1.35
PTCH1-223ENST00000551623 TSR3Q9UJK0 312 aaKnown RBP6.62□□□□□ -1.35
PTCH1-223ENST00000551623 FBXW7Q969H0 707 aa6.61□□□□□ -1.35
PTCH1-223ENST00000551623 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.61□□□□□ -1.35
PTCH1-223ENST00000551623 HPS5Q9UPZ3 1129 aa6.61□□□□□ -1.35
PTCH1-223ENST00000551623 TYW1BQ6NUM6 668 aa6.6□□□□□ -1.35
PTCH1-223ENST00000551623 LRCH3Q96II8 777 aa6.6□□□□□ -1.35
PTCH1-223ENST00000551623 PHF14O94880 888 aa6.59□□□□□ -1.35
PTCH1-223ENST00000551623 FAM98CQ17RN3 349 aaKnown RBP6.59□□□□□ -1.35
PTCH1-223ENST00000551623 ZNF775Q96BV0 537 aaPredicted RBP6.59□□□□□ -1.35
PTCH1-223ENST00000551623 DDX27Q96GQ7 796 aaKnown RBP6.58□□□□□ -1.36
PTCH1-223ENST00000551623 RYDENQ9NUL5 291 aaKnown RBP6.58□□□□□ -1.36
PTCH1-223ENST00000551623 V9GY48 417 aaPredicted RBP6.58□□□□□ -1.36
PTCH1-223ENST00000551623 TRIM6-TRIM34B2RNG4 842 aa6.57□□□□□ -1.36
PTCH1-223ENST00000551623 NKX1-1Q15270 411 aaPredicted RBP6.57□□□□□ -1.36
PTCH1-223ENST00000551623 EMILIN3Q9NT22 766 aa6.56□□□□□ -1.36
PTCH1-223ENST00000551623 CHGAP10645 457 aaKnown RBP6.55□□□□□ -1.36
PTCH1-223ENST00000551623 TJAP1Q5JTD0 557 aa6.55□□□□□ -1.36
PTCH1-223ENST00000551623 C6orf132Q5T0Z8 1188 aa6.55□□□□□ -1.36
PTCH1-223ENST00000551623 PPP1R18Q6NYC8 613 aa6.55□□□□□ -1.36
PTCH1-223ENST00000551623 LARP6Q9BRS8 491 aaKnown RBP6.55□□□□□ -1.36
PTCH1-223ENST00000551623 DNAJC5Q9H3Z4 198 aa6.55□□□□□ -1.36
PTCH1-223ENST00000551623 PPP4CP60510 307 aa6.54□□□□□ -1.36
PTCH1-223ENST00000551623 MFSD10Q14728 455 aa6.53□□□□□ -1.36
PTCH1-223ENST00000551623 PDZRN3Q9UPQ7 1066 aa6.53□□□□□ -1.36
PTCH1-223ENST00000551623 EPAS1Q99814 870 aa6.52□□□□□ -1.37
PTCH1-223ENST00000551623 IL21Q9HBE4 155 aa6.52□□□□□ -1.37
PTCH1-223ENST00000551623 MTRQ99707 1265 aa6.51□□□□□ -1.37
PTCH1-223ENST00000551623 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.51□□□□□ -1.37
PTCH1-223ENST00000551623 PACS2Q86VP3 889 aa6.48□□□□□ -1.37
PTCH1-223ENST00000551623 RBM33Q96EV2 1170 aaKnown RBP6.48□□□□□ -1.37
PTCH1-223ENST00000551623 TSKSQ9UJT2 592 aa6.48□□□□□ -1.37
PTCH1-223ENST00000551623 SAMD7Q7Z3H4 446 aa6.47□□□□□ -1.37
PTCH1-223ENST00000551623 ZNF516Q92618 1163 aa6.47□□□□□ -1.37
PTCH1-223ENST00000551623 SMAPO00193 183 aa6.43□□□□□ -1.38
PTCH1-223ENST00000551623 GGCXP38435 758 aa6.43□□□□□ -1.38
PTCH1-223ENST00000551623 NKX2-3Q8TAU0 364 aa6.43□□□□□ -1.38
PTCH1-223ENST00000551623 GTPBP6O43824 516 aaPredicted RBP6.42□□□□□ -1.38
PTCH1-223ENST00000551623 MYT1Q01538 1121 aa6.42□□□□□ -1.38
PTCH1-223ENST00000551623 EN1Q05925 392 aaPredicted RBP6.42□□□□□ -1.38
PTCH1-223ENST00000551623 TSR1Q2NL82 804 aaKnown RBP6.42□□□□□ -1.38
PTCH1-223ENST00000551623 TRIM67Q6ZTA4 783 aa6.42□□□□□ -1.38
PTCH1-223ENST00000551623 DDX12PQ92771 950 aa6.42□□□□□ -1.38
PTCH1-223ENST00000551623 POTECB2RU33 542 aa6.41□□□□□ -1.38
PTCH1-223ENST00000551623 DPYSL4O14531 572 aa6.41□□□□□ -1.38
PTCH1-223ENST00000551623 APLP1P51693 650 aa6.41□□□□□ -1.38
PTCH1-223ENST00000551623 PKDCCQ504Y2 493 aa6.41□□□□□ -1.38
PTCH1-223ENST00000551623 TMUB1Q9BVT8 246 aa6.41□□□□□ -1.38
PTCH1-223ENST00000551623 MAP3K7O43318 606 aa6.4□□□□□ -1.38
PTCH1-223ENST00000551623 RNF40O75150 1001 aa6.4□□□□□ -1.38
PTCH1-223ENST00000551623 CAMK2BQ13554 666 aa6.4□□□□□ -1.38
PTCH1-223ENST00000551623 CDCA7LQ96GN5 454 aa6.4□□□□□ -1.38
PTCH1-223ENST00000551623 DGAT1O75907 488 aa6.39□□□□□ -1.39
PTCH1-223ENST00000551623 NBR1Q14596 966 aa6.39□□□□□ -1.39
PTCH1-223ENST00000551623 FAM198AQ9UFP1 575 aa6.39□□□□□ -1.39
PTCH1-223ENST00000551623 NBPF26B4DH59 902 aa6.38□□□□□ -1.39
PTCH1-223ENST00000551623 C3orf80F5H4A9 247 aa6.38□□□□□ -1.39
PTCH1-223ENST00000551623 PRSS12P56730 875 aa6.38□□□□□ -1.39
PTCH1-223ENST00000551623 LCE2AQ5TA79 106 aaPredicted RBP6.38□□□□□ -1.39
PTCH1-223ENST00000551623 TREML4Q6UXN2 200 aa6.38□□□□□ -1.39
PTCH1-223ENST00000551623 TATDN2Q93075 761 aa6.38□□□□□ -1.39
PTCH1-223ENST00000551623 PNMA3Q9UL41 463 aa6.38□□□□□ -1.39
PTCH1-223ENST00000551623 COPS2P61201 443 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 PRR20EP86478 221 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 PRR20CP86479 221 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 PRR20DP86480 221 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 PRR20BP86481 221 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 PRR20AP86496 221 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 CADPS2Q86UW7 1296 aa6.37□□□□□ -1.39
PTCH1-223ENST00000551623 SLC19A1P41440 591 aa6.36□□□□□ -1.39
PTCH1-223ENST00000551623 HDGFP51858 240 aaKnown RBP6.36□□□□□ -1.39
PTCH1-223ENST00000551623 ZPR1O75312 459 aa6.35□□□□□ -1.39
PTCH1-223ENST00000551623 CERKQ8TCT0 537 aa6.35□□□□□ -1.39
PTCH1-223ENST00000551623 NECTIN2Q92692 538 aa6.35□□□□□ -1.39
PTCH1-223ENST00000551623 EMID1Q96A84 441 aaPredicted RBP6.35□□□□□ -1.39
PTCH1-223ENST00000551623 FAM187AA6NFU0 413 aa6.34□□□□□ -1.39
PTCH1-223ENST00000551623 SPRYD7Q5W111 196 aa6.34□□□□□ -1.39
PTCH1-223ENST00000551623 ZNF598Q86UK7 904 aaKnown RBP6.34□□□□□ -1.39
PTCH1-223ENST00000551623 RNF223E7ERA6 249 aa6.33□□□□□ -1.4
PTCH1-223ENST00000551623 NUDT18Q6ZVK8 323 aa6.32□□□□□ -1.4
PTCH1-223ENST00000551623 PDIA6Q15084 440 aa6.31□□□□□ -1.4
PTCH1-223ENST00000551623 SLF2Q8IX21 1173 aa6.31□□□□□ -1.4
PTCH1-223ENST00000551623 ST8SIA5O15466 376 aa6.3□□□□□ -1.4
PTCH1-223ENST00000551623 GDF9O60383 454 aa6.3□□□□□ -1.4
PTCH1-223ENST00000551623 SWT1Q5T5J6 900 aaKnown RBP6.3□□□□□ -1.4
PTCH1-223ENST00000551623 ZNF697Q5TEC3 545 aa6.3□□□□□ -1.4
PTCH1-223ENST00000551623 AAASQ9NRG9 546 aa6.3□□□□□ -1.4
PTCH1-223ENST00000551623 TNFRSF10AO00220 468 aa6.29□□□□□ -1.4
PTCH1-223ENST00000551623 ANKLE1Q8NAG6 615 aa6.29□□□□□ -1.4
PTCH1-223ENST00000551623 RBM27Q9P2N5 1060 aaKnown RBP6.29□□□□□ -1.4
PTCH1-223ENST00000551623 STK17AQ9UEE5 414 aa6.29□□□□□ -1.4
PTCH1-223ENST00000551623 PCDHB3Q9Y5E6 796 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms