RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 KDM4CQ9H3R0 1056 aa10.25□□□□□ -0.77
LIMA1-205ENST00000550592 NUDT7P0C024 238 aa10.24□□□□□ -0.77
LIMA1-205ENST00000550592 AMHR2Q16671 573 aa10.24□□□□□ -0.77
LIMA1-205ENST00000550592 KHSRPQ92945 711 aaKnown RBP eCLIP10.24□□□□□ -0.77
LIMA1-205ENST00000550592 DAXXQ9UER7 740 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-205ENST00000550592 TSR1Q2NL82 804 aaKnown RBP10.23□□□□□ -0.77
LIMA1-205ENST00000550592 ZDHHC16Q969W1 377 aa10.22□□□□□ -0.77
LIMA1-205ENST00000550592 C6orf132Q5T0Z8 1188 aa10.21□□□□□ -0.77
LIMA1-205ENST00000550592 ZNF710Q8N1W2 664 aa10.21□□□□□ -0.77
LIMA1-205ENST00000550592 ZNF454Q8N9F8 522 aa10.21□□□□□ -0.77
LIMA1-205ENST00000550592 CERKQ8TCT0 537 aa10.2□□□□□ -0.78
LIMA1-205ENST00000550592 SNPHO15079 494 aa10.18□□□□□ -0.78
LIMA1-205ENST00000550592 IL27Q8NEV9 243 aa10.18□□□□□ -0.78
LIMA1-205ENST00000550592 PARP9Q8IXQ6 854 aa10.17□□□□□ -0.78
LIMA1-205ENST00000550592 ADAM33Q9BZ11 813 aa10.17□□□□□ -0.78
LIMA1-205ENST00000550592 LHX6Q9UPM6 363 aa10.16□□□□□ -0.78
LIMA1-205ENST00000550592 PSDA5PKW4 1024 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-205ENST00000550592 HOXB1P14653 301 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-205ENST00000550592 ERICH6Q7L0X2 663 aa10.14□□□□□ -0.79
LIMA1-205ENST00000550592 TTC13Q8NBP0 860 aa10.14□□□□□ -0.79
LIMA1-205ENST00000550592 FAM117AQ9C073 453 aa10.14□□□□□ -0.79
LIMA1-205ENST00000550592 RBM27Q9P2N5 1060 aaKnown RBP10.14□□□□□ -0.79
LIMA1-205ENST00000550592 PPP4R3BQ5MIZ7 849 aa10.12□□□□□ -0.79
LIMA1-205ENST00000550592 OTUD5Q96G74 571 aa10.12□□□□□ -0.79
LIMA1-205ENST00000550592 DDRGK1Q96HY6 314 aa10.12□□□□□ -0.79
LIMA1-205ENST00000550592 OATP04181 439 aa10.11□□□□□ -0.79
LIMA1-205ENST00000550592 TTLL12Q14166 644 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-205ENST00000550592 PADI6Q6TGC4 694 aa10.11□□□□□ -0.79
LIMA1-205ENST00000550592 PHOX2BQ99453 314 aa10.11□□□□□ -0.79
LIMA1-205ENST00000550592 TMUB1Q9BVT8 246 aa10.11□□□□□ -0.79
LIMA1-205ENST00000550592 BCL2L12Q9HB09 334 aa10.11□□□□□ -0.79
LIMA1-205ENST00000550592 TIMELESSQ9UNS1 1208 aa10.11□□□□□ -0.79
LIMA1-205ENST00000550592 PRSS12P56730 875 aa10.1□□□□□ -0.79
LIMA1-205ENST00000550592 REPIN1Q9BWE0 567 aaKnown RBP10.1□□□□□ -0.79
LIMA1-205ENST00000550592 PLEKHG3A1L390 1219 aa10.09□□□□□ -0.79
LIMA1-205ENST00000550592 CLCN1P35523 988 aa10.09□□□□□ -0.79
LIMA1-205ENST00000550592 GIGYF2Q6Y7W6 1299 aaKnown RBP10.09□□□□□ -0.79
LIMA1-205ENST00000550592 METTL3Q86U44 580 aaKnown RBP10.09□□□□□ -0.79
LIMA1-205ENST00000550592 ADGRG1Q9Y653 693 aa10.09□□□□□ -0.79
LIMA1-205ENST00000550592 CDCA7LQ96GN5 454 aa10.08□□□□□ -0.8
LIMA1-205ENST00000550592 FAM161AQ3B820 660 aa10.07□□□□□ -0.8
LIMA1-205ENST00000550592 LHX8Q68G74 356 aa10.07□□□□□ -0.8
LIMA1-205ENST00000550592 PXYLP1Q8TE99 480 aa10.07□□□□□ -0.8
LIMA1-205ENST00000550592 COL9A1P20849 921 aa10.06□□□□□ -0.8
LIMA1-205ENST00000550592 MDM2Q00987 491 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-205ENST00000550592 GPCPD1Q9NPB8 672 aa10.06□□□□□ -0.8
LIMA1-205ENST00000550592 MS4A1P11836 297 aa10.05□□□□□ -0.8
LIMA1-205ENST00000550592 PTPREP23469 700 aa10.05□□□□□ -0.8
LIMA1-205ENST00000550592 PPP1R3GB7ZBB8 358 aa10.04□□□□□ -0.8
LIMA1-205ENST00000550592 RBM46Q8TBY0 533 aaKnown RBP10.03□□□□□ -0.8
LIMA1-205ENST00000550592 FAM198AQ9UFP1 575 aa10.03□□□□□ -0.8
LIMA1-205ENST00000550592 SSTR3P32745 418 aaPredicted RBP10.02□□□□□ -0.81
LIMA1-205ENST00000550592 GOPCQ9HD26 462 aa10.02□□□□□ -0.81
LIMA1-205ENST00000550592 EYA1Q99502 592 aa10□□□□□ -0.81
LIMA1-205ENST00000550592 FAM217BQ9NTX9 383 aaPredicted RBP10□□□□□ -0.81
LIMA1-205ENST00000550592 TSKSQ9UJT2 592 aa10□□□□□ -0.81
LIMA1-205ENST00000550592 C14orf37Q86TY3 774 aa9.99□□□□□ -0.81
LIMA1-205ENST00000550592 NLRP7Q8WX94 980 aa9.99□□□□□ -0.81
LIMA1-205ENST00000550592 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.98□□□□□ -0.81
LIMA1-205ENST00000550592 ONECUT3O60422 494 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-205ENST00000550592 TRIM6-TRIM34B2RNG4 842 aa9.97□□□□□ -0.81
LIMA1-205ENST00000550592 PACS2Q86VP3 889 aa9.96□□□□□ -0.82
LIMA1-205ENST00000550592 RCCD1A6NED2 376 aa9.95□□□□□ -0.82
LIMA1-205ENST00000550592 C3orf80F5H4A9 247 aa9.95□□□□□ -0.82
LIMA1-205ENST00000550592 NUDT18Q6ZVK8 323 aa9.95□□□□□ -0.82
LIMA1-205ENST00000550592 TATDN2Q93075 761 aa9.95□□□□□ -0.82
LIMA1-205ENST00000550592 KCNK17Q96T54 332 aa9.95□□□□□ -0.82
LIMA1-205ENST00000550592 BEGAINQ9BUH8 593 aa9.95□□□□□ -0.82
LIMA1-205ENST00000550592 NBPF26B4DH59 902 aa9.94□□□□□ -0.82
LIMA1-205ENST00000550592 SH3D19Q5HYK7 790 aa9.94□□□□□ -0.82
LIMA1-205ENST00000550592 KCNH8Q96L42 1107 aa9.94□□□□□ -0.82
LIMA1-205ENST00000550592 RSPH6AQ9H0K4 717 aa9.94□□□□□ -0.82
LIMA1-205ENST00000550592 ERBB3P21860 1342 aa9.93□□□□□ -0.82
LIMA1-205ENST00000550592 PNMA3Q9UL41 463 aa9.93□□□□□ -0.82
LIMA1-205ENST00000550592 ST18O60284 1047 aa9.92□□□□□ -0.82
LIMA1-205ENST00000550592 PROX2Q3B8N5 592 aa9.92□□□□□ -0.82
LIMA1-205ENST00000550592 ZBED2Q9BTP6 218 aa9.92□□□□□ -0.82
LIMA1-205ENST00000550592 ARHGAP33O14559 1287 aa9.91□□□□□ -0.82
LIMA1-205ENST00000550592 DNAJB2P25686 324 aa9.91□□□□□ -0.82
LIMA1-205ENST00000550592 SKIV2LQ15477 1246 aaKnown RBP9.91□□□□□ -0.82
LIMA1-205ENST00000550592 VARS2Q5ST30 1063 aaKnown RBP9.91□□□□□ -0.82
LIMA1-205ENST00000550592 PCMTD1Q96MG8 357 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-205ENST00000550592 PSEN2P49810 448 aa9.9□□□□□ -0.82
LIMA1-205ENST00000550592 SLC4A5Q9BY07 1137 aa9.9□□□□□ -0.82
LIMA1-205ENST00000550592 POTEEQ6S8J3 1075 aa9.89□□□□□ -0.83
LIMA1-205ENST00000550592 TMEM134Q9H6X4 195 aa9.89□□□□□ -0.83
LIMA1-205ENST00000550592 KIAA1468Q9P260 1216 aa9.89□□□□□ -0.83
LIMA1-205ENST00000550592 SMAPO00193 183 aa9.87□□□□□ -0.83
LIMA1-205ENST00000550592 PBX2P40425 430 aa9.87□□□□□ -0.83
LIMA1-205ENST00000550592 EMP3P54852 163 aa9.87□□□□□ -0.83
LIMA1-205ENST00000550592 DIXDC1Q155Q3 683 aa9.87□□□□□ -0.83
LIMA1-205ENST00000550592 SULF1Q8IWU6 871 aa9.87□□□□□ -0.83
LIMA1-205ENST00000550592 CD46P15529 392 aa9.86□□□□□ -0.83
LIMA1-205ENST00000550592 RABGEF1Q9UJ41 708 aa9.86□□□□□ -0.83
LIMA1-205ENST00000550592 MYSM1Q5VVJ2 828 aa9.85□□□□□ -0.83
LIMA1-205ENST00000550592 ZNF687Q8N1G0 1237 aa9.85□□□□□ -0.83
LIMA1-205ENST00000550592 TBC1D2Q9BYX2 928 aa9.85□□□□□ -0.83
LIMA1-205ENST00000550592 DMRTA1Q5VZB9 504 aa9.84□□□□□ -0.83
LIMA1-205ENST00000550592 MARVELD3Q96A59 401 aa9.84□□□□□ -0.83
LIMA1-205ENST00000550592 AXIN2Q9Y2T1 843 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms