RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 SAMD1Q6SPF0 538 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-220ENST00000550136 CHMP4BQ9H444 224 aaKnown RBP12.61□□□□□ -0.39
PTCH1-220ENST00000550136 CENPJQ9HC77 1338 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-220ENST00000550136 POGZQ7Z3K3 1410 aa12.58□□□□□ -0.4
PTCH1-220ENST00000550136 ANP32AP39687 249 aaKnown RBP12.58□□□□□ -0.4
PTCH1-220ENST00000550136 GSE1Q14687 1217 aa12.58□□□□□ -0.4
PTCH1-220ENST00000550136 FANCAO15360 1455 aa12.56□□□□□ -0.4
PTCH1-220ENST00000550136 CANXP27824 592 aaKnown RBP12.55□□□□□ -0.4
PTCH1-220ENST00000550136 CTTNBP2Q8WZ74 1663 aa12.55□□□□□ -0.4
PTCH1-220ENST00000550136 YEATS2Q9ULM3 1422 aa12.55□□□□□ -0.4
PTCH1-220ENST00000550136 ATP10BO94823 1461 aa12.54□□□□□ -0.4
PTCH1-220ENST00000550136 TTC37Q6PGP7 1564 aa12.54□□□□□ -0.4
PTCH1-220ENST00000550136 RGS3P49796 1198 aa12.54□□□□□ -0.4
PTCH1-220ENST00000550136 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
PTCH1-220ENST00000550136 NPM2Q86SE8 214 aaKnown RBP12.53□□□□□ -0.4
PTCH1-220ENST00000550136 PREX1Q8TCU6 1659 aa12.53□□□□□ -0.4
PTCH1-220ENST00000550136 AKNAQ7Z591 1439 aa12.53□□□□□ -0.4
PTCH1-220ENST00000550136 RICTORQ6R327 1708 aa12.52□□□□□ -0.4
PTCH1-220ENST00000550136 FHOD3Q2V2M9 1422 aa12.52□□□□□ -0.4
PTCH1-220ENST00000550136 DENND4BO75064 1496 aaPredicted RBP12.52□□□□□ -0.41
PTCH1-220ENST00000550136 IQSEC2Q5JU85 1478 aa12.52□□□□□ -0.41
PTCH1-220ENST00000550136 ZMYM4Q5VZL5 1548 aa12.51□□□□□ -0.41
PTCH1-220ENST00000550136 FER1L4A9Z1Z3 1794 aa12.51□□□□□ -0.41
PTCH1-220ENST00000550136 STRCQ7RTU9 1775 aa12.51□□□□□ -0.41
PTCH1-220ENST00000550136 PPM1GO15355 546 aaPredicted RBP12.5□□□□□ -0.41
PTCH1-220ENST00000550136 CNGB1Q14028 1251 aaPredicted RBP12.5□□□□□ -0.41
PTCH1-220ENST00000550136 EFCAB5A4FU69 1503 aa12.49□□□□□ -0.41
PTCH1-220ENST00000550136 ZFYVE16Q7Z3T8 1539 aa12.49□□□□□ -0.41
PTCH1-220ENST00000550136 PTPRTO14522 1441 aa12.48□□□□□ -0.41
PTCH1-220ENST00000550136 SIGLEC1Q9BZZ2 1709 aa12.48□□□□□ -0.41
PTCH1-220ENST00000550136 HAP1P54257 671 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-220ENST00000550136 ZFP91Q96JP5 570 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-220ENST00000550136 MAGI2Q86UL8 1455 aa12.48□□□□□ -0.41
PTCH1-220ENST00000550136 MYCNP04198 464 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-220ENST00000550136 TEX2Q8IWB9 1127 aa12.48□□□□□ -0.41
PTCH1-220ENST00000550136 CFAP74Q9C0B2 1584 aa12.47□□□□□ -0.41
PTCH1-220ENST00000550136 PPP4R2Q9NY27 417 aa12.47□□□□□ -0.41
PTCH1-220ENST00000550136 ABCB7O75027 752 aa12.47□□□□□ -0.41
PTCH1-220ENST00000550136 CHRM1P11229 460 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-220ENST00000550136 FTSJ3Q8IY81 847 aaKnown RBP12.46□□□□□ -0.41
PTCH1-220ENST00000550136 PDCL3Q9H2J4 239 aa12.46□□□□□ -0.41
PTCH1-220ENST00000550136 ARHGEF12Q9NZN5 1544 aa12.46□□□□□ -0.41
PTCH1-220ENST00000550136 LTBP4Q8N2S1 1624 aa12.45□□□□□ -0.42
PTCH1-220ENST00000550136 BCCIPQ9P287 314 aaKnown RBP eCLIP12.45□□□□□ -0.42
PTCH1-220ENST00000550136 ARID3CA6NKF2 412 aa12.44□□□□□ -0.42
PTCH1-220ENST00000550136 RRAGDQ9NQL2 400 aaPredicted RBP12.43□□□□□ -0.42
PTCH1-220ENST00000550136 UHRF1BP1Q6BDS2 1440 aa12.43□□□□□ -0.42
PTCH1-220ENST00000550136 NCLP19338 710 aaKnown RBP12.42□□□□□ -0.42
PTCH1-220ENST00000550136 FRAT1Q92837 279 aaPredicted RBP12.42□□□□□ -0.42
PTCH1-220ENST00000550136 SLC4A1APQ9BWU0 796 aaKnown RBP12.42□□□□□ -0.42
PTCH1-220ENST00000550136 MLECQ14165 292 aa12.42□□□□□ -0.42
PTCH1-220ENST00000550136 RAPGEF6Q8TEU7 1601 aa12.41□□□□□ -0.42
PTCH1-220ENST00000550136 HECW1Q76N89 1606 aa12.4□□□□□ -0.42
PTCH1-220ENST00000550136 PNNQ9H307 717 aaKnown RBP12.39□□□□□ -0.43
PTCH1-220ENST00000550136 LAS1LQ9Y4W2 734 aaKnown RBP12.39□□□□□ -0.43
PTCH1-220ENST00000550136 SETD1BQ9UPS6 1966 aaKnown RBP12.39□□□□□ -0.43
PTCH1-220ENST00000550136 ATP10AO60312 1499 aa12.39□□□□□ -0.43
PTCH1-220ENST00000550136 DCAF11Q8TEB1 546 aa12.38□□□□□ -0.43
PTCH1-220ENST00000550136 SECISBP2LQ93073 1101 aaKnown RBP12.38□□□□□ -0.43
PTCH1-220ENST00000550136 C9orf84Q5VXU9 1444 aa12.38□□□□□ -0.43
PTCH1-220ENST00000550136 C14orf37Q86TY3 774 aa12.37□□□□□ -0.43
PTCH1-220ENST00000550136 CEBPAP49715 358 aaPredicted RBP12.37□□□□□ -0.43
PTCH1-220ENST00000550136 NUP153P49790 1475 aaKnown RBP12.36□□□□□ -0.43
PTCH1-220ENST00000550136 SAMD9Q5K651 1589 aa12.36□□□□□ -0.43
PTCH1-220ENST00000550136 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.35□□□□□ -0.43
PTCH1-220ENST00000550136 PRXQ9BXM0 1461 aa12.35□□□□□ -0.43
PTCH1-220ENST00000550136 CLCN1P35523 988 aa12.34□□□□□ -0.43
PTCH1-220ENST00000550136 EEA1Q15075 1411 aa12.34□□□□□ -0.43
PTCH1-220ENST00000550136 P3H3Q8IVL6 736 aa12.34□□□□□ -0.43
PTCH1-220ENST00000550136 NCOA1Q15788 1441 aa12.33□□□□□ -0.43
PTCH1-220ENST00000550136 PLEKHD1A6NEE1 506 aa12.33□□□□□ -0.44
PTCH1-220ENST00000550136 SMAP1Q8IYB5 467 aaPredicted RBP12.33□□□□□ -0.44
PTCH1-220ENST00000550136 HSP90B1P14625 803 aaKnown RBP12.33□□□□□ -0.44
PTCH1-220ENST00000550136 SCAPERQ9BY12 1400 aa12.32□□□□□ -0.44
PTCH1-220ENST00000550136 TRIM52Q96A61 297 aa12.32□□□□□ -0.44
PTCH1-220ENST00000550136 MED1Q15648 1581 aaPredicted RBP12.31□□□□□ -0.44
PTCH1-220ENST00000550136 UBAP1LF5GYI3 381 aa12.31□□□□□ -0.44
PTCH1-220ENST00000550136 TPM2P07951 284 aa12.31□□□□□ -0.44
PTCH1-220ENST00000550136 IRX6P78412 446 aaPredicted RBP12.31□□□□□ -0.44
PTCH1-220ENST00000550136 TMEM51Q9NW97 253 aa12.31□□□□□ -0.44
PTCH1-220ENST00000550136 CCER2I3L3R5 266 aa12.3□□□□□ -0.44
PTCH1-220ENST00000550136 ZNF830Q96NB3 372 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-220ENST00000550136 FOXD4L1Q9NU39 408 aa12.3□□□□□ -0.44
PTCH1-220ENST00000550136 C3P01024 1663 aa12.3□□□□□ -0.44
PTCH1-220ENST00000550136 TRAPPC8Q9Y2L5 1435 aa12.29□□□□□ -0.44
PTCH1-220ENST00000550136 REREQ9P2R6 1566 aa12.29□□□□□ -0.44
PTCH1-220ENST00000550136 VGFO15240 615 aaPredicted RBP12.28□□□□□ -0.44
PTCH1-220ENST00000550136 DDRGK1Q96HY6 314 aa12.28□□□□□ -0.44
PTCH1-220ENST00000550136 PLCH2O75038 1416 aa12.28□□□□□ -0.44
PTCH1-220ENST00000550136 NFKBIBQ15653 356 aa12.28□□□□□ -0.44
PTCH1-220ENST00000550136 UTP14CQ5TAP6 766 aaKnown RBP12.27□□□□□ -0.45
PTCH1-220ENST00000550136 B4GALNT3Q6L9W6 998 aa12.27□□□□□ -0.45
PTCH1-220ENST00000550136 PLCD3Q8N3E9 789 aa12.26□□□□□ -0.45
PTCH1-220ENST00000550136 FBXO3Q9UK99 471 aa12.26□□□□□ -0.45
PTCH1-220ENST00000550136 CAMSAP1Q5T5Y3 1602 aa12.24□□□□□ -0.45
PTCH1-220ENST00000550136 AGLP35573 1532 aa12.24□□□□□ -0.45
PTCH1-220ENST00000550136 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.24□□□□□ -0.45
PTCH1-220ENST00000550136 KDM5CP41229 1560 aa12.24□□□□□ -0.45
PTCH1-220ENST00000550136 ZNF518AQ6AHZ1 1483 aa12.24□□□□□ -0.45
PTCH1-220ENST00000550136 POTEHQ6S545 545 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms