RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 RNF17Q9BXT8 1623 aaKnown RBP27.56■■■□□ 2
CHMP1A-205ENST00000548650 PLA2R1Q13018 1463 aa27.55■■■□□ 2
CHMP1A-205ENST00000548650 EIF2AK4Q9P2K8 1649 aaKnown RBP27.53■■■□□ 2
CHMP1A-205ENST00000548650 KIF3BO15066 747 aa27.53■■■□□ 2
CHMP1A-205ENST00000548650 CROCC2H7BZ55 1655 aa27.52■■■□□ 2
CHMP1A-205ENST00000548650 LTBP4Q8N2S1 1624 aa27.52■■■□□ 2
CHMP1A-205ENST00000548650 PZPP20742 1482 aa27.52■■■□□ 2
CHMP1A-205ENST00000548650 TCOF1Q13428 1488 aaKnown RBP27.51■■□□□ 1.99
CHMP1A-205ENST00000548650 ZC3H13Q5T200 1668 aaKnown RBP27.5■■□□□ 1.99
CHMP1A-205ENST00000548650 DNMT1P26358 1616 aaKnown RBP27.5■■□□□ 1.99
CHMP1A-205ENST00000548650 A2ML1A8K2U0 1454 aa27.5■■□□□ 1.99
CHMP1A-205ENST00000548650 TSPY4P0CV99 314 aa27.49■■□□□ 1.99
CHMP1A-205ENST00000548650 TSPY10P0CW01 314 aa27.49■■□□□ 1.99
CHMP1A-205ENST00000548650 MROH1Q8NDA8 1641 aa27.48■■□□□ 1.99
CHMP1A-205ENST00000548650 PTPN23Q9H3S7 1636 aa27.46■■□□□ 1.99
CHMP1A-205ENST00000548650 ABCC3O15438 1527 aa27.45■■□□□ 1.98
CHMP1A-205ENST00000548650 TNRQ92752 1358 aa27.44■■□□□ 1.98
CHMP1A-205ENST00000548650 POLR1AO95602 1720 aaPredicted RBP27.44■■□□□ 1.98
CHMP1A-205ENST00000548650 SHANK2Q9UPX8 1470 aa27.44■■□□□ 1.98
CHMP1A-205ENST00000548650 NCKAP5LQ9HCH0 1330 aa27.41■■□□□ 1.98
CHMP1A-205ENST00000548650 DUOX2Q9NRD8 1548 aa27.41■■□□□ 1.98
CHMP1A-205ENST00000548650 WASHC2CQ9Y4E1 1318 aa27.41■■□□□ 1.98
CHMP1A-205ENST00000548650 IQSEC2Q5JU85 1478 aa27.4■■□□□ 1.98
CHMP1A-205ENST00000548650 CEP152O94986 1710 aa27.4■■□□□ 1.98
CHMP1A-205ENST00000548650 FBXO31Q5XUX0 539 aaPredicted RBP27.39■■□□□ 1.98
CHMP1A-205ENST00000548650 NEURL4Q96JN8 1562 aa27.38■■□□□ 1.97
CHMP1A-205ENST00000548650 ABCC5O15440 1437 aa27.37■■□□□ 1.97
CHMP1A-205ENST00000548650 PKD2Q13563 968 aa27.37■■□□□ 1.97
CHMP1A-205ENST00000548650 FGD6Q6ZV73 1430 aa27.37■■□□□ 1.97
CHMP1A-205ENST00000548650 SPATA31D1Q6ZQQ2 1576 aa27.36■■□□□ 1.97
CHMP1A-205ENST00000548650 NLRP1Q9C000 1473 aa27.36■■□□□ 1.97
CHMP1A-205ENST00000548650 PRDM15P57071 1507 aaPredicted RBP27.36■■□□□ 1.97
CHMP1A-205ENST00000548650 APLP2Q06481 763 aa27.34■■□□□ 1.97
CHMP1A-205ENST00000548650 DAPK1P53355 1430 aa27.33■■□□□ 1.97
CHMP1A-205ENST00000548650 DEPDC5O75140 1603 aa27.32■■□□□ 1.96
CHMP1A-205ENST00000548650 KIF15Q9NS87 1388 aa27.32■■□□□ 1.96
CHMP1A-205ENST00000548650 ERBINQ96RT1 1412 aa27.32■■□□□ 1.96
CHMP1A-205ENST00000548650 ZNF335Q9H4Z2 1342 aaPredicted RBP27.31■■□□□ 1.96
CHMP1A-205ENST00000548650 ERVK-7P63135 1459 aa27.31■■□□□ 1.96
CHMP1A-205ENST00000548650 UGGT1Q9NYU2 1555 aa27.31■■□□□ 1.96
CHMP1A-205ENST00000548650 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.23■■□□□ 1.95
CHMP1A-205ENST00000548650 CFAP65Q6ZU64 1925 aaKnown RBP27.23■■□□□ 1.95
CHMP1A-205ENST00000548650 UBR1Q8IWV7 1749 aa27.21■■□□□ 1.95
CHMP1A-205ENST00000548650 MED14O60244 1454 aa27.19■■□□□ 1.94
CHMP1A-205ENST00000548650 ARHGAP31Q2M1Z3 1444 aa27.19■■□□□ 1.94
CHMP1A-205ENST00000548650 RRP7BPQ9NSQ0 103 aa27.19■■□□□ 1.94
CHMP1A-205ENST00000548650 IQGAP1P46940 1657 aa27.19■■□□□ 1.94
CHMP1A-205ENST00000548650 ADGRL2O95490 1459 aa27.18■■□□□ 1.94
CHMP1A-205ENST00000548650 VWDEQ8N2E2 1590 aa27.18■■□□□ 1.94
CHMP1A-205ENST00000548650 THEMISQ8N1K5 641 aaPredicted RBP27.16■■□□□ 1.94
CHMP1A-205ENST00000548650 CPS1P31327 1500 aa27.16■■□□□ 1.94
CHMP1A-205ENST00000548650 ANKRD30AQ9BXX3 1397 aa27.15■■□□□ 1.94
CHMP1A-205ENST00000548650 LMTK2Q8IWU2 1503 aa27.15■■□□□ 1.94
CHMP1A-205ENST00000548650 NPHP4O75161 1426 aaPredicted RBP27.15■■□□□ 1.94
CHMP1A-205ENST00000548650 ANKLE2Q86XL3 938 aa27.13■■□□□ 1.93
CHMP1A-205ENST00000548650 PIK3C2BO00750 1634 aa27.09■■□□□ 1.93
CHMP1A-205ENST00000548650 CHIC2Q9UKJ5 165 aa27.09■■□□□ 1.93
CHMP1A-205ENST00000548650 EFCAB6Q5THR3 1501 aa27.09■■□□□ 1.93
CHMP1A-205ENST00000548650 ARHGAP23Q9P227 1491 aa27.07■■□□□ 1.92
CHMP1A-205ENST00000548650 STRCP1A6NGW2 1772 aa27.07■■□□□ 1.92
CHMP1A-205ENST00000548650 SLIT1O75093 1534 aa27.07■■□□□ 1.92
CHMP1A-205ENST00000548650 KANK1Q14678 1352 aa27.07■■□□□ 1.92
CHMP1A-205ENST00000548650 KDM5AP29375 1690 aaKnown RBP27.05■■□□□ 1.92
CHMP1A-205ENST00000548650 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.05■■□□□ 1.927e-11■■□□□ 13.6
CHMP1A-205ENST00000548650 SYNMO15061 1565 aa27.05■■□□□ 1.92
CHMP1A-205ENST00000548650 UBAP1LF5GYI3 381 aa27.04■■□□□ 1.92
CHMP1A-205ENST00000548650 SCAF11Q99590 1463 aaKnown RBP27.04■■□□□ 1.92
CHMP1A-205ENST00000548650 FAM50AQ14320 339 aaKnown RBP27.01■■□□□ 1.91
CHMP1A-205ENST00000548650 ANKRD50Q9ULJ7 1429 aa26.99■■□□□ 1.91
CHMP1A-205ENST00000548650 UNC13BO14795 1591 aa26.98■■□□□ 1.91
CHMP1A-205ENST00000548650 NOS1P29475 1434 aa26.98■■□□□ 1.91
CHMP1A-205ENST00000548650 TET3O43151 1660 aa26.97■■□□□ 1.91
CHMP1A-205ENST00000548650 ALKQ9UM73 1620 aa26.97■■□□□ 1.91
CHMP1A-205ENST00000548650 DISP3Q9P2K9 1392 aa26.95■■□□□ 1.9
CHMP1A-205ENST00000548650 ADGRB3O60242 1522 aa26.95■■□□□ 1.9
CHMP1A-205ENST00000548650 GCC2Q8IWJ2 1684 aa26.94■■□□□ 1.9
CHMP1A-205ENST00000548650 LRRC7Q96NW7 1537 aa26.93■■□□□ 1.9
CHMP1A-205ENST00000548650 RPRD2Q5VT52 1461 aaKnown RBP26.93■■□□□ 1.9
CHMP1A-205ENST00000548650 LTKP29376 864 aa26.92■■□□□ 1.9
CHMP1A-205ENST00000548650 TMEM2Q9UHN6 1383 aa26.92■■□□□ 1.9
CHMP1A-205ENST00000548650 ROCK1Q13464 1354 aa26.87■■□□□ 1.89
CHMP1A-205ENST00000548650 TXNDC2Q86VQ3 553 aa26.87■■□□□ 1.89
CHMP1A-205ENST00000548650 XIRP1Q702N8 1843 aaKnown RBP26.87■■□□□ 1.89
CHMP1A-205ENST00000548650 MYO5BQ9ULV0 1848 aa26.86■■□□□ 1.89
CHMP1A-205ENST00000548650 IDI1Q13907 227 aa26.86■■□□□ 1.89
CHMP1A-205ENST00000548650 IQGAP3Q86VI3 1631 aa26.86■■□□□ 1.89
CHMP1A-205ENST00000548650 E9PCH4 1651 aa26.85■■□□□ 1.89
CHMP1A-205ENST00000548650 TOM1O60784 492 aa26.84■■□□□ 1.89
CHMP1A-205ENST00000548650 EID1Q9Y6B2 187 aa26.83■■□□□ 1.89
CHMP1A-205ENST00000548650 STAG3Q9UJ98 1225 aa26.82■■□□□ 1.88
CHMP1A-205ENST00000548650 PIP4K2BP78356 416 aa26.81■■□□□ 1.88
CHMP1A-205ENST00000548650 SCAF1Q9H7N4 1312 aaKnown RBP26.81■■□□□ 1.88
CHMP1A-205ENST00000548650 TMEM131LA2VDJ0 1609 aa26.79■■□□□ 1.88
CHMP1A-205ENST00000548650 ILDR2Q71H61 639 aa26.78■■□□□ 1.88
CHMP1A-205ENST00000548650 SLC52A1Q9NWF4 448 aa26.78■■□□□ 1.88
CHMP1A-205ENST00000548650 HSPA1LP34931 641 aa26.77■■□□□ 1.88
CHMP1A-205ENST00000548650 NWD1Q149M9 1564 aa26.76■■□□□ 1.87
CHMP1A-205ENST00000548650 ZFYVE9O95405 1425 aa26.75■■□□□ 1.87
CHMP1A-205ENST00000548650 MED1Q15648 1581 aaPredicted RBP26.74■■□□□ 1.87
CHMP1A-205ENST00000548650 PPARGC1BQ86YN6 1023 aaKnown RBP26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms