RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MFSD10Q14728 455 aa10.92□□□□□ -0.66
VPS29-205ENST00000548539 LAPTM4BQ86VI4 370 aa10.92□□□□□ -0.66
VPS29-205ENST00000548539 EMILIN3Q9NT22 766 aa10.92□□□□□ -0.66
VPS29-205ENST00000548539 TYW1BQ6NUM6 668 aa10.91□□□□□ -0.66
VPS29-205ENST00000548539 NYAP1Q6ZVC0 841 aa10.9□□□□□ -0.66
VPS29-205ENST00000548539 SOWAHBA6NEL2 793 aa10.89□□□□□ -0.67
VPS29-205ENST00000548539 PHF14O94880 888 aa10.89□□□□□ -0.67
VPS29-205ENST00000548539 KIAA1468Q9P260 1216 aa10.89□□□□□ -0.67
VPS29-205ENST00000548539 ZFRQ96KR1 1074 aaKnown RBP10.88□□□□□ -0.67
VPS29-205ENST00000548539 KCNC4Q03721 635 aa10.86□□□□□ -0.67
VPS29-205ENST00000548539 ONECUT3O60422 494 aaPredicted RBP10.85□□□□□ -0.67
VPS29-205ENST00000548539 Q6ZNB5 142 aa10.85□□□□□ -0.67
VPS29-205ENST00000548539 WBP1LQ9NX94 342 aa10.85□□□□□ -0.67
VPS29-205ENST00000548539 RTN4Q9NQC3 1192 aaKnown RBP10.84□□□□□ -0.67
VPS29-205ENST00000548539 C6orf132Q5T0Z8 1188 aa10.83□□□□□ -0.68
VPS29-205ENST00000548539 EPAS1Q99814 870 aa10.83□□□□□ -0.68
VPS29-205ENST00000548539 SEPT9Q9UHD8 586 aaPredicted RBP10.83□□□□□ -0.68
VPS29-205ENST00000548539 TRIM6-TRIM34B2RNG4 842 aa10.79□□□□□ -0.68
VPS29-205ENST00000548539 FAM98CQ17RN3 349 aaKnown RBP10.79□□□□□ -0.68
VPS29-205ENST00000548539 AMER1Q5JTC6 1135 aaPredicted RBP10.78□□□□□ -0.68
VPS29-205ENST00000548539 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.78□□□□□ -0.68
VPS29-205ENST00000548539 TSR3Q9UJK0 312 aaKnown RBP10.78□□□□□ -0.68
VPS29-205ENST00000548539 CADPS2Q86UW7 1296 aa10.77□□□□□ -0.69
VPS29-205ENST00000548539 LRCH3Q96II8 777 aa10.77□□□□□ -0.69
VPS29-205ENST00000548539 RBM33Q96EV2 1170 aaKnown RBP10.76□□□□□ -0.69
VPS29-205ENST00000548539 HPS5Q9UPZ3 1129 aa10.76□□□□□ -0.69
VPS29-205ENST00000548539 DPYSL4O14531 572 aa10.75□□□□□ -0.69
VPS29-205ENST00000548539 DCAF8L2P0C7V8 631 aa10.75□□□□□ -0.69
VPS29-205ENST00000548539 CAMK2BQ13554 666 aa10.74□□□□□ -0.69
VPS29-205ENST00000548539 LAPTM4AQ15012 233 aa10.74□□□□□ -0.69
VPS29-205ENST00000548539 PACS2Q86VP3 889 aa10.72□□□□□ -0.69
VPS29-205ENST00000548539 DDX12PQ92771 950 aa10.72□□□□□ -0.69
VPS29-205ENST00000548539 PPP4CP60510 307 aa10.69□□□□□ -0.7
VPS29-205ENST00000548539 GFRA3O60609 400 aa10.68□□□□□ -0.7
VPS29-205ENST00000548539 MAP3K7O43318 606 aa10.66□□□□□ -0.7
VPS29-205ENST00000548539 TSKSQ9UJT2 592 aa10.66□□□□□ -0.7
VPS29-205ENST00000548539 EN1Q05925 392 aaPredicted RBP10.65□□□□□ -0.7
VPS29-205ENST00000548539 NBR1Q14596 966 aa10.65□□□□□ -0.7
VPS29-205ENST00000548539 TRAF7Q6Q0C0 670 aa10.65□□□□□ -0.7
VPS29-205ENST00000548539 TSR1Q2NL82 804 aaKnown RBP10.64□□□□□ -0.71
VPS29-205ENST00000548539 TJAP1Q5JTD0 557 aa10.62□□□□□ -0.71
VPS29-205ENST00000548539 SAMD7Q7Z3H4 446 aa10.62□□□□□ -0.71
VPS29-205ENST00000548539 PRKD2Q9BZL6 878 aa10.62□□□□□ -0.71
VPS29-205ENST00000548539 CDCA7LQ96GN5 454 aa10.61□□□□□ -0.71
VPS29-205ENST00000548539 SMAPO00193 183 aa10.6□□□□□ -0.71
VPS29-205ENST00000548539 LCE2BO14633 110 aa10.59□□□□□ -0.71
VPS29-205ENST00000548539 IL21Q9HBE4 155 aa10.59□□□□□ -0.71
VPS29-205ENST00000548539 PRSS12P56730 875 aa10.58□□□□□ -0.72
VPS29-205ENST00000548539 PDIA6Q15084 440 aa10.58□□□□□ -0.72
VPS29-205ENST00000548539 MTRQ99707 1265 aa10.58□□□□□ -0.72
VPS29-205ENST00000548539 NRG2O14511 850 aaPredicted RBP10.57□□□□□ -0.72
VPS29-205ENST00000548539 PPP1R18Q6NYC8 613 aa10.57□□□□□ -0.72
VPS29-205ENST00000548539 SPDYE16A6NNV3 312 aaPredicted RBP10.56□□□□□ -0.72
VPS29-205ENST00000548539 CERKQ8TCT0 537 aa10.56□□□□□ -0.72
VPS29-205ENST00000548539 HDGFP51858 240 aaKnown RBP10.55□□□□□ -0.72
VPS29-205ENST00000548539 TATDN2Q93075 761 aa10.55□□□□□ -0.72
VPS29-205ENST00000548539 V9GY48 417 aaPredicted RBP10.55□□□□□ -0.72
VPS29-205ENST00000548539 NBPF26B4DH59 902 aa10.54□□□□□ -0.72
VPS29-205ENST00000548539 FAM198AQ9UFP1 575 aa10.54□□□□□ -0.72
VPS29-205ENST00000548539 PNMA3Q9UL41 463 aa10.54□□□□□ -0.72
VPS29-205ENST00000548539 RNF40O75150 1001 aa10.52□□□□□ -0.73
VPS29-205ENST00000548539 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.52□□□□□ -0.73
VPS29-205ENST00000548539 ZNF516Q92618 1163 aa10.51□□□□□ -0.73
VPS29-205ENST00000548539 GRXCR2A6NFK2 248 aa10.5□□□□□ -0.73
VPS29-205ENST00000548539 C3orf80F5H4A9 247 aa10.5□□□□□ -0.73
VPS29-205ENST00000548539 NUDT18Q6ZVK8 323 aa10.48□□□□□ -0.73
VPS29-205ENST00000548539 PDZRN3Q9UPQ7 1066 aa10.48□□□□□ -0.73
VPS29-205ENST00000548539 GGCXP38435 758 aa10.47□□□□□ -0.73
VPS29-205ENST00000548539 PRIM1P49642 420 aaKnown RBP10.47□□□□□ -0.73
VPS29-205ENST00000548539 APLP1P51693 650 aa10.47□□□□□ -0.73
VPS29-205ENST00000548539 NECTIN2Q92692 538 aa10.47□□□□□ -0.73
VPS29-205ENST00000548539 E2F4Q16254 413 aa10.45□□□□□ -0.74
VPS29-205ENST00000548539 ZNF787Q6DD87 383 aa10.45□□□□□ -0.74
VPS29-205ENST00000548539 NKX2-3Q8TAU0 364 aa10.45□□□□□ -0.74
VPS29-205ENST00000548539 BBXQ8WY36 941 aaPredicted RBP10.44□□□□□ -0.74
VPS29-205ENST00000548539 RBM27Q9P2N5 1060 aaKnown RBP10.43□□□□□ -0.74
VPS29-205ENST00000548539 COPS2P61201 443 aa10.42□□□□□ -0.74
VPS29-205ENST00000548539 CDHR5Q9HBB8 845 aa10.42□□□□□ -0.74
VPS29-205ENST00000548539 OSBPP22059 807 aa10.41□□□□□ -0.74
VPS29-205ENST00000548539 SLF2Q8IX21 1173 aa10.41□□□□□ -0.74
VPS29-205ENST00000548539 TMUB1Q9BVT8 246 aa10.41□□□□□ -0.74
VPS29-205ENST00000548539 ARIH1Q9Y4X5 557 aaPredicted RBP10.41□□□□□ -0.74
VPS29-205ENST00000548539 SWT1Q5T5J6 900 aaKnown RBP10.4□□□□□ -0.74
VPS29-205ENST00000548539 WDR70Q9NW82 654 aa10.4□□□□□ -0.74
VPS29-205ENST00000548539 SLC24A1O60721 1099 aa10.39□□□□□ -0.75
VPS29-205ENST00000548539 SLC4A3P48751 1232 aa10.39□□□□□ -0.75
VPS29-205ENST00000548539 SPRYD3Q8NCJ5 442 aa10.37□□□□□ -0.75
VPS29-205ENST00000548539 ZPR1O75312 459 aa10.36□□□□□ -0.75
VPS29-205ENST00000548539 TTC13Q8NBP0 860 aa10.36□□□□□ -0.75
VPS29-205ENST00000548539 PADI6Q6TGC4 694 aa10.35□□□□□ -0.75
VPS29-205ENST00000548539 ZNF775Q96BV0 537 aaPredicted RBP10.34□□□□□ -0.75
VPS29-205ENST00000548539 PRR14Q9BWN1 585 aa10.34□□□□□ -0.75
VPS29-205ENST00000548539 SLC19A1P41440 591 aa10.32□□□□□ -0.76
VPS29-205ENST00000548539 NPDC1Q9NQX5 325 aaPredicted RBP10.32□□□□□ -0.76
VPS29-205ENST00000548539 PCDHB3Q9Y5E6 796 aa10.32□□□□□ -0.76
VPS29-205ENST00000548539 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.31□□□□□ -0.76
VPS29-205ENST00000548539 RNF223E7ERA6 249 aa10.29□□□□□ -0.76
VPS29-205ENST00000548539 PKDCCQ504Y2 493 aa10.29□□□□□ -0.76
VPS29-205ENST00000548539 EYA1Q99502 592 aa10.29□□□□□ -0.76
VPS29-205ENST00000548539 TRIM67Q6ZTA4 783 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms