RNA–Protein interactions for RNA: ENST00000548379.5

PTCH1-216, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-216ENST00000548379 MAP3K7O43318 606 aa8.7□□□□□ -1.02
PTCH1-216ENST00000548379 GTF3C3Q9Y5Q9 886 aa8.7□□□□□ -1.02
PTCH1-216ENST00000548379 RIMBP2O15034 1052 aa8.69□□□□□ -1.02
PTCH1-216ENST00000548379 NUDT7P0C024 238 aa8.69□□□□□ -1.02
PTCH1-216ENST00000548379 TSR1Q2NL82 804 aaKnown RBP8.69□□□□□ -1.02
PTCH1-216ENST00000548379 KDM4CQ9H3R0 1056 aa8.69□□□□□ -1.02
PTCH1-216ENST00000548379 RBM33Q96EV2 1170 aaKnown RBP8.68□□□□□ -1.02
PTCH1-216ENST00000548379 ZDHHC16Q969W1 377 aa8.67□□□□□ -1.02
PTCH1-216ENST00000548379 C6orf132Q5T0Z8 1188 aa8.66□□□□□ -1.02
PTCH1-216ENST00000548379 ZNF454Q8N9F8 522 aa8.66□□□□□ -1.02
PTCH1-216ENST00000548379 CERKQ8TCT0 537 aa8.66□□□□□ -1.02
PTCH1-216ENST00000548379 PARP9Q8IXQ6 854 aa8.65□□□□□ -1.02
PTCH1-216ENST00000548379 TTC13Q8NBP0 860 aa8.65□□□□□ -1.02
PTCH1-216ENST00000548379 ADAM33Q9BZ11 813 aa8.65□□□□□ -1.02
PTCH1-216ENST00000548379 ZNF710Q8N1W2 664 aa8.64□□□□□ -1.03
PTCH1-216ENST00000548379 DAXXQ9UER7 740 aaPredicted RBP8.64□□□□□ -1.03
PTCH1-216ENST00000548379 SNPHO15079 494 aa8.63□□□□□ -1.03
PTCH1-216ENST00000548379 HOXB1P14653 301 aaPredicted RBP8.63□□□□□ -1.03
PTCH1-216ENST00000548379 OTUD5Q96G74 571 aa8.63□□□□□ -1.03
PTCH1-216ENST00000548379 TMUB1Q9BVT8 246 aa8.63□□□□□ -1.03
PTCH1-216ENST00000548379 RBM27Q9P2N5 1060 aaKnown RBP8.63□□□□□ -1.03
PTCH1-216ENST00000548379 LHX6Q9UPM6 363 aa8.63□□□□□ -1.03
PTCH1-216ENST00000548379 PSDA5PKW4 1024 aaPredicted RBP8.62□□□□□ -1.03
PTCH1-216ENST00000548379 PHOX2BQ99453 314 aa8.6□□□□□ -1.03
PTCH1-216ENST00000548379 FAM117AQ9C073 453 aa8.6□□□□□ -1.03
PTCH1-216ENST00000548379 BCL2L12Q9HB09 334 aa8.6□□□□□ -1.03
PTCH1-216ENST00000548379 PLEKHG3A1L390 1219 aa8.59□□□□□ -1.03
PTCH1-216ENST00000548379 PPP4R3BQ5MIZ7 849 aa8.59□□□□□ -1.03
PTCH1-216ENST00000548379 PADI6Q6TGC4 694 aa8.59□□□□□ -1.03
PTCH1-216ENST00000548379 IL27Q8NEV9 243 aa8.59□□□□□ -1.03
PTCH1-216ENST00000548379 REPIN1Q9BWE0 567 aaKnown RBP8.59□□□□□ -1.03
PTCH1-216ENST00000548379 TIMELESSQ9UNS1 1208 aa8.58□□□□□ -1.04
PTCH1-216ENST00000548379 ADGRG1Q9Y653 693 aa8.58□□□□□ -1.04
PTCH1-216ENST00000548379 PRSS12P56730 875 aa8.57□□□□□ -1.04
PTCH1-216ENST00000548379 METTL3Q86U44 580 aaKnown RBP8.57□□□□□ -1.04
PTCH1-216ENST00000548379 OATP04181 439 aa8.56□□□□□ -1.04
PTCH1-216ENST00000548379 COL9A1P20849 921 aa8.56□□□□□ -1.04
PTCH1-216ENST00000548379 GIGYF2Q6Y7W6 1299 aaKnown RBP8.56□□□□□ -1.04
PTCH1-216ENST00000548379 PXYLP1Q8TE99 480 aa8.56□□□□□ -1.04
PTCH1-216ENST00000548379 DDRGK1Q96HY6 314 aa8.56□□□□□ -1.04
PTCH1-216ENST00000548379 TTLL12Q14166 644 aaPredicted RBP8.55□□□□□ -1.04
PTCH1-216ENST00000548379 CDCA7LQ96GN5 454 aa8.55□□□□□ -1.04
PTCH1-216ENST00000548379 FAM198AQ9UFP1 575 aa8.55□□□□□ -1.04
PTCH1-216ENST00000548379 PPP1R3GB7ZBB8 358 aa8.54□□□□□ -1.04
PTCH1-216ENST00000548379 MS4A1P11836 297 aa8.54□□□□□ -1.04
PTCH1-216ENST00000548379 CLCN1P35523 988 aa8.54□□□□□ -1.04
PTCH1-216ENST00000548379 FAM161AQ3B820 660 aa8.54□□□□□ -1.04
PTCH1-216ENST00000548379 ERICH6Q7L0X2 663 aa8.54□□□□□ -1.04
PTCH1-216ENST00000548379 GPCPD1Q9NPB8 672 aa8.53□□□□□ -1.04
PTCH1-216ENST00000548379 PTPREP23469 700 aa8.52□□□□□ -1.05
PTCH1-216ENST00000548379 MDM2Q00987 491 aaPredicted RBP8.52□□□□□ -1.05
PTCH1-216ENST00000548379 GOPCQ9HD26 462 aa8.51□□□□□ -1.05
PTCH1-216ENST00000548379 TSKSQ9UJT2 592 aa8.51□□□□□ -1.05
PTCH1-216ENST00000548379 EYA1Q99502 592 aa8.5□□□□□ -1.05
PTCH1-216ENST00000548379 FAM217BQ9NTX9 383 aaPredicted RBP8.5□□□□□ -1.05
PTCH1-216ENST00000548379 ONECUT3O60422 494 aaPredicted RBP8.49□□□□□ -1.05
PTCH1-216ENST00000548379 SSTR3P32745 418 aaPredicted RBP8.49□□□□□ -1.05
PTCH1-216ENST00000548379 RBM46Q8TBY0 533 aaKnown RBP8.49□□□□□ -1.05
PTCH1-216ENST00000548379 TRIM6-TRIM34B2RNG4 842 aa8.48□□□□□ -1.05
PTCH1-216ENST00000548379 C3orf80F5H4A9 247 aa8.47□□□□□ -1.05
PTCH1-216ENST00000548379 NLRP7Q8WX94 980 aa8.47□□□□□ -1.05
PTCH1-216ENST00000548379 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.46□□□□□ -1.06
PTCH1-216ENST00000548379 POTEEQ6S8J3 1075 aa8.46□□□□□ -1.06
PTCH1-216ENST00000548379 ST18O60284 1047 aa8.45□□□□□ -1.06
PTCH1-216ENST00000548379 SH3D19Q5HYK7 790 aa8.45□□□□□ -1.06
PTCH1-216ENST00000548379 RCCD1A6NED2 376 aa8.44□□□□□ -1.06
PTCH1-216ENST00000548379 TATDN2Q93075 761 aa8.44□□□□□ -1.06
PTCH1-216ENST00000548379 KCNK17Q96T54 332 aa8.44□□□□□ -1.06
PTCH1-216ENST00000548379 ZBED2Q9BTP6 218 aa8.44□□□□□ -1.06
PTCH1-216ENST00000548379 SLC4A5Q9BY07 1137 aa8.44□□□□□ -1.06
PTCH1-216ENST00000548379 NBPF26B4DH59 902 aa8.43□□□□□ -1.06
PTCH1-216ENST00000548379 PROX2Q3B8N5 592 aa8.43□□□□□ -1.06
PTCH1-216ENST00000548379 NUDT18Q6ZVK8 323 aa8.43□□□□□ -1.06
PTCH1-216ENST00000548379 PACS2Q86VP3 889 aa8.42□□□□□ -1.06
PTCH1-216ENST00000548379 BEGAINQ9BUH8 593 aa8.42□□□□□ -1.06
PTCH1-216ENST00000548379 ERBB3P21860 1342 aa8.41□□□□□ -1.06
PTCH1-216ENST00000548379 DNAJB2P25686 324 aa8.41□□□□□ -1.06
PTCH1-216ENST00000548379 PSEN2P49810 448 aa8.41□□□□□ -1.06
PTCH1-216ENST00000548379 VARS2Q5ST30 1063 aaKnown RBP8.41□□□□□ -1.06
PTCH1-216ENST00000548379 C14orf37Q86TY3 774 aa8.41□□□□□ -1.06
PTCH1-216ENST00000548379 PNMA3Q9UL41 463 aa8.41□□□□□ -1.06
PTCH1-216ENST00000548379 ARHGAP33O14559 1287 aa8.4□□□□□ -1.06
PTCH1-216ENST00000548379 RSPH6AQ9H0K4 717 aa8.4□□□□□ -1.06
PTCH1-216ENST00000548379 TMEM134Q9H6X4 195 aa8.4□□□□□ -1.06
PTCH1-216ENST00000548379 CD46P15529 392 aa8.39□□□□□ -1.07
PTCH1-216ENST00000548379 PBX2P40425 430 aa8.39□□□□□ -1.07
PTCH1-216ENST00000548379 SKIV2LQ15477 1246 aaKnown RBP8.39□□□□□ -1.07
PTCH1-216ENST00000548379 KCNH8Q96L42 1107 aa8.39□□□□□ -1.07
PTCH1-216ENST00000548379 DMRTA1Q5VZB9 504 aa8.38□□□□□ -1.07
PTCH1-216ENST00000548379 ZNF687Q8N1G0 1237 aa8.38□□□□□ -1.07
PTCH1-216ENST00000548379 KIAA1468Q9P260 1216 aa8.38□□□□□ -1.07
PTCH1-216ENST00000548379 RABGEF1Q9UJ41 708 aa8.38□□□□□ -1.07
PTCH1-216ENST00000548379 EMP3P54852 163 aa8.37□□□□□ -1.07
PTCH1-216ENST00000548379 PCMTD1Q96MG8 357 aaPredicted RBP8.37□□□□□ -1.07
PTCH1-216ENST00000548379 POTEB3A0JP26 581 aa8.36□□□□□ -1.07
PTCH1-216ENST00000548379 SMAPO00193 183 aa8.36□□□□□ -1.07
PTCH1-216ENST00000548379 LCE2DQ5TA82 110 aaPredicted RBP8.36□□□□□ -1.07
PTCH1-216ENST00000548379 MYSM1Q5VVJ2 828 aa8.36□□□□□ -1.07
PTCH1-216ENST00000548379 POTEBQ6S5H4 581 aa8.36□□□□□ -1.07
PTCH1-216ENST00000548379 MARVELD3Q96A59 401 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms