RNA–Protein interactions for RNA: ENST00000543324.1

CIT-213, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 3

Gene CIT, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-213	ENST00000543324	SLC34A2	O95436	690 aa		11	□□□□□ -0.65
CIT-213	ENST00000543324	ANKLE2	Q86XL3	938 aa		11	□□□□□ -0.65
CIT-213	ENST00000543324	NUP153	P49790	1475 aa	Known RBP	11	□□□□□ -0.65
CIT-213	ENST00000543324	ABCC1	P33527	1531 aa		10.99	□□□□□ -0.65
CIT-213	ENST00000543324	ITSN2	Q9NZM3	1697 aa		10.98	□□□□□ -0.65
CIT-213	ENST00000543324	AFAP1	Q8N556	730 aa		10.98	□□□□□ -0.65
CIT-213	ENST00000543324	FGD6	Q6ZV73	1430 aa		10.98	□□□□□ -0.65
CIT-213	ENST00000543324	LRRC9	Q6ZRR7	1453 aa		10.97	□□□□□ -0.65
CIT-213	ENST00000543324	SHPRH	Q149N8	1683 aa		10.96	□□□□□ -0.65
CIT-213	ENST00000543324	ZC3H13	Q5T200	1668 aa	Known RBP	10.96	□□□□□ -0.65
CIT-213	ENST00000543324	KDM5D	Q9BY66	1539 aa		10.96	□□□□□ -0.65
CIT-213	ENST00000543324	PLEKHD1	A6NEE1	506 aa		10.96	□□□□□ -0.65
CIT-213	ENST00000543324	FAM9A	Q8IZU1	332 aa	Predicted RBP	10.96	□□□□□ -0.65
CIT-213	ENST00000543324	NWD1	Q149M9	1564 aa		10.95	□□□□□ -0.66
CIT-213	ENST00000543324	RBM6	P78332	1123 aa	Known RBP	10.95	□□□□□ -0.66
CIT-213	ENST00000543324	CCDC125	Q86Z20	511 aa		10.95	□□□□□ -0.66
CIT-213	ENST00000543324	MYT1L	Q9UL68	1186 aa		10.95	□□□□□ -0.66
CIT-213	ENST00000543324	MYO5C	Q9NQX4	1742 aa		10.94	□□□□□ -0.66
CIT-213	ENST00000543324	KIDINS220	Q9ULH0	1771 aa		10.93	□□□□□ -0.66
CIT-213	ENST00000543324	AFF2	P51816	1311 aa		10.93	□□□□□ -0.66
CIT-213	ENST00000543324	SAMD9	Q5K651	1589 aa		10.93	□□□□□ -0.66
CIT-213	ENST00000543324	EFCAB2	Q5VUJ9	269 aa		10.92	□□□□□ -0.66
CIT-213	ENST00000543324	BCL9L	Q86UU0	1499 aa		10.92	□□□□□ -0.66
CIT-213	ENST00000543324	C1QTNF8	P60827	252 aa		10.91	□□□□□ -0.66
CIT-213	ENST00000543324	MAP3K1	Q13233	1512 aa		10.9	□□□□□ -0.66
CIT-213	ENST00000543324	KIF14	Q15058	1648 aa		10.89	□□□□□ -0.67
CIT-213	ENST00000543324	HRC	P23327	699 aa		10.89	□□□□□ -0.67
CIT-213	ENST00000543324	ATP7A	Q04656	1500 aa		10.89	□□□□□ -0.67
CIT-213	ENST00000543324	EEA1	Q15075	1411 aa		10.88	□□□□□ -0.67
CIT-213	ENST00000543324	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.88	□□□□□ -0.67
CIT-213	ENST00000543324	QTRT2	Q9H974	415 aa	Known RBP	10.88	□□□□□ -0.67
CIT-213	ENST00000543324	UGGT1	Q9NYU2	1555 aa		10.88	□□□□□ -0.67
CIT-213	ENST00000543324	PCDH10	Q9P2E7	1040 aa		10.88	□□□□□ -0.67
CIT-213	ENST00000543324	P3H3	Q8IVL6	736 aa		10.87	□□□□□ -0.67
CIT-213	ENST00000543324	FAM135A	Q9P2D6	1515 aa		10.87	□□□□□ -0.67
CIT-213	ENST00000543324	TNR	Q92752	1358 aa		10.87	□□□□□ -0.67
CIT-213	ENST00000543324	ZNF784	Q8NCA9	323 aa	Predicted RBP	10.86	□□□□□ -0.67
CIT-213	ENST00000543324	TMEM94	Q12767	1356 aa		10.86	□□□□□ -0.67
CIT-213	ENST00000543324	NGLY1	Q96IV0	654 aa		10.85	□□□□□ -0.67
CIT-213	ENST00000543324	PLXNC1	O60486	1568 aa		10.84	□□□□□ -0.67
CIT-213	ENST00000543324	ARHGAP5	Q13017	1502 aa		10.84	□□□□□ -0.67
CIT-213	ENST00000543324	DIP2A	Q14689	1571 aa		10.83	□□□□□ -0.68
CIT-213	ENST00000543324	NLRP1	Q9C000	1473 aa		10.83	□□□□□ -0.68
CIT-213	ENST00000543324	PSD	A5PKW4	1024 aa	Predicted RBP	10.83	□□□□□ -0.68
CIT-213	ENST00000543324	POTED	Q86YR6	584 aa		10.83	□□□□□ -0.68
CIT-213	ENST00000543324	AHDC1	Q5TGY3	1603 aa	Predicted RBP	10.83	□□□□□ -0.68
CIT-213	ENST00000543324	BLM	P54132	1417 aa	Predicted RBP	10.83	□□□□□ -0.68
CIT-213	ENST00000543324	TIAM1	Q13009	1591 aa		10.82	□□□□□ -0.68
CIT-213	ENST00000543324	DEFB132	Q7Z7B7	95 aa		10.8	□□□□□ -0.68
CIT-213	ENST00000543324	SLAIN2	Q9P270	581 aa		10.8	□□□□□ -0.68
CIT-213	ENST00000543324	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.79	□□□□□ -0.68
CIT-213	ENST00000543324	CSRNP3	Q8WYN3	585 aa		10.79	□□□□□ -0.68
CIT-213	ENST00000543324	PZP	P20742	1482 aa		10.79	□□□□□ -0.68
CIT-213	ENST00000543324	UTRN	P46939	3433 aa		10.78	□□□□□ -0.68
CIT-213	ENST00000543324	ADGB	Q8N7X0	1667 aa		10.78	□□□□□ -0.68
CIT-213	ENST00000543324	ABCC3	O15438	1527 aa		10.78	□□□□□ -0.68
CIT-213	ENST00000543324	SCAF11	Q99590	1463 aa	Known RBP	10.77	□□□□□ -0.69
CIT-213	ENST00000543324	C8orf37	Q96NL8	207 aa		10.77	□□□□□ -0.69
CIT-213	ENST00000543324	PRDM15	P57071	1507 aa	Predicted RBP	10.76	□□□□□ -0.69
CIT-213	ENST00000543324	GGT6	Q6P531	493 aa		10.76	□□□□□ -0.69
CIT-213	ENST00000543324	MIA2	Q96PC5	1412 aa		10.75	□□□□□ -0.69
CIT-213	ENST00000543324	CDC42BPB	Q9Y5S2	1711 aa		10.75	□□□□□ -0.69
CIT-213	ENST00000543324	SAMD9L	Q8IVG5	1584 aa		10.75	□□□□□ -0.69
CIT-213	ENST00000543324	MSH6	P52701	1360 aa		10.75	□□□□□ -0.69
CIT-213	ENST00000543324	KDM5A	P29375	1690 aa	Known RBP	10.74	□□□□□ -0.69
CIT-213	ENST00000543324	MSH5	O43196	834 aa		10.74	□□□□□ -0.69
CIT-213	ENST00000543324	PIAS4	Q8N2W9	510 aa	Predicted RBP	10.74	□□□□□ -0.69
CIT-213	ENST00000543324	A2M	P01023	1474 aa		10.73	□□□□□ -0.69
CIT-213	ENST00000543324	LRRIQ1	Q96JM4	1722 aa		10.72	□□□□□ -0.69
CIT-213	ENST00000543324	DCAF8L1	A6NGE4	600 aa		10.71	□□□□□ -0.69
CIT-213	ENST00000543324	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.71	□□□□□ -0.69
CIT-213	ENST00000543324	UNC13B	O14795	1591 aa		10.71	□□□□□ -0.69
CIT-213	ENST00000543324	ADRA2B	P18089	450 aa		10.71	□□□□□ -0.69
CIT-213	ENST00000543324	NKTR	P30414	1462 aa	Known RBP	10.71	□□□□□ -0.69
CIT-213	ENST00000543324	CAMTA1	Q9Y6Y1	1673 aa		10.7	□□□□□ -0.7
CIT-213	ENST00000543324	ATRN	O75882	1429 aa		10.7	□□□□□ -0.7
CIT-213	ENST00000543324	PROSER2	Q86WR7	435 aa	Predicted RBP	10.7	□□□□□ -0.7
CIT-213	ENST00000543324	TRPC5	Q9UL62	973 aa	Predicted RBP	10.7	□□□□□ -0.7
CIT-213	ENST00000543324	KCNA6	P17658	529 aa		10.69	□□□□□ -0.7
CIT-213	ENST00000543324	UBR1	Q8IWV7	1749 aa		10.69	□□□□□ -0.7
CIT-213	ENST00000543324	PREX2	Q70Z35	1606 aa		10.69	□□□□□ -0.7
CIT-213	ENST00000543324	INO80	Q9ULG1	1556 aa	Predicted RBP	10.69	□□□□□ -0.7
CIT-213	ENST00000543324	ARHGAP23	Q9P227	1491 aa		10.68	□□□□□ -0.7
CIT-213	ENST00000543324	SLIT1	O75093	1534 aa		10.68	□□□□□ -0.7
CIT-213	ENST00000543324	NCOA2	Q15596	1464 aa		10.68	□□□□□ -0.7
CIT-213	ENST00000543324	SETD5	Q9C0A6	1442 aa		10.67	□□□□□ -0.7
CIT-213	ENST00000543324	LTK	P29376	864 aa		10.67	□□□□□ -0.7
CIT-213	ENST00000543324	SF3B2	Q13435	895 aa	Known RBP	10.67	□□□□□ -0.7
CIT-213	ENST00000543324	ARHGAP35	Q9NRY4	1499 aa		10.67	□□□□□ -0.7
CIT-213	ENST00000543324	SPHKAP	Q2M3C7	1700 aa		10.67	□□□□□ -0.7
CIT-213	ENST00000543324	MAST1	Q9Y2H9	1570 aa		10.66	□□□□□ -0.7
CIT-213	ENST00000543324	USP21	Q9UK80	565 aa		10.66	□□□□□ -0.7
CIT-213	ENST00000543324	CAPN15	O75808	1086 aa		10.65	□□□□□ -0.7
CIT-213	ENST00000543324	R3HDM1	Q15032	1099 aa	Known RBP	10.65	□□□□□ -0.7
CIT-213	ENST00000543324	NINL	Q9Y2I6	1382 aa		10.65	□□□□□ -0.71
CIT-213	ENST00000543324	CHD4	Q14839	1912 aa		10.64	□□□□□ -0.71
CIT-213	ENST00000543324	SPAG9	O60271	1321 aa	Known RBP	10.64	□□□□□ -0.71
CIT-213	ENST00000543324	GIGYF1	O75420	1035 aa	Predicted RBP	10.63	□□□□□ -0.71
CIT-213	ENST00000543324	EHMT2	Q96KQ7	1210 aa		10.63	□□□□□ -0.71
CIT-213	ENST00000543324	PRELP	P51888	382 aa		10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms