RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 CAMSAP1Q5T5Y3 1602 aa8.4□□□□□ -1.07
NPIPB3-211ENST00000542953 KDM5CP41229 1560 aa8.39□□□□□ -1.07
NPIPB3-211ENST00000542953 AGLP35573 1532 aa8.39□□□□□ -1.07
NPIPB3-211ENST00000542953 NPATQ14207 1427 aa8.39□□□□□ -1.07
NPIPB3-211ENST00000542953 PLA2R1Q13018 1463 aa8.38□□□□□ -1.07
NPIPB3-211ENST00000542953 ZNF518AQ6AHZ1 1483 aa8.38□□□□□ -1.07
NPIPB3-211ENST00000542953 OTUD5Q96G74 571 aa8.38□□□□□ -1.07
NPIPB3-211ENST00000542953 TCOF1Q13428 1488 aaKnown RBP8.38□□□□□ -1.07
NPIPB3-211ENST00000542953 CNTLNQ9NXG0 1405 aa8.37□□□□□ -1.07
NPIPB3-211ENST00000542953 DIP2CQ9Y2E4 1556 aa8.37□□□□□ -1.07
NPIPB3-211ENST00000542953 PKD2Q13563 968 aa8.37□□□□□ -1.07
NPIPB3-211ENST00000542953 NCKAP5LQ9HCH0 1330 aa8.35□□□□□ -1.07
NPIPB3-211ENST00000542953 MLH3Q9UHC1 1453 aa8.35□□□□□ -1.07
NPIPB3-211ENST00000542953 EFCAB2Q5VUJ9 269 aa8.35□□□□□ -1.07
NPIPB3-211ENST00000542953 CSRNP3Q8WYN3 585 aa8.35□□□□□ -1.07
NPIPB3-211ENST00000542953 SPDYE4A6NLX3 237 aa8.34□□□□□ -1.07
NPIPB3-211ENST00000542953 ZNF142P52746 1687 aaPredicted RBP8.34□□□□□ -1.08
NPIPB3-211ENST00000542953 POTEB2H3BUK9 544 aa8.33□□□□□ -1.08
NPIPB3-211ENST00000542953 TOM1O60784 492 aa8.33□□□□□ -1.08
NPIPB3-211ENST00000542953 AFAP1Q8N556 730 aa8.33□□□□□ -1.08
NPIPB3-211ENST00000542953 MROH2AA6NES4 1674 aa8.33□□□□□ -1.08
NPIPB3-211ENST00000542953 CPS1P31327 1500 aa8.33□□□□□ -1.08
NPIPB3-211ENST00000542953 ABCA6Q8N139 1617 aa8.32□□□□□ -1.08
NPIPB3-211ENST00000542953 PIP4K2BP78356 416 aa8.32□□□□□ -1.08
NPIPB3-211ENST00000542953 PHF12Q96QT6 1004 aa8.32□□□□□ -1.08
NPIPB3-211ENST00000542953 ESF1Q9H501 851 aaKnown RBP8.32□□□□□ -1.08
NPIPB3-211ENST00000542953 ALKQ9UM73 1620 aa8.32□□□□□ -1.08
NPIPB3-211ENST00000542953 RGS17Q9UGC6 210 aaPredicted RBP8.31□□□□□ -1.08
NPIPB3-211ENST00000542953 ZMYM3Q14202 1370 aa8.31□□□□□ -1.08
NPIPB3-211ENST00000542953 CEP170BQ9Y4F5 1589 aaPredicted RBP8.31□□□□□ -1.08
NPIPB3-211ENST00000542953 PTPRKQ15262 1439 aa8.3□□□□□ -1.08
NPIPB3-211ENST00000542953 CDK13Q14004 1512 aaKnown RBP8.3□□□□□ -1.08
NPIPB3-211ENST00000542953 MYO3AQ8NEV4 1616 aa8.29□□□□□ -1.08
NPIPB3-211ENST00000542953 MYO5CQ9NQX4 1742 aa8.29□□□□□ -1.08
NPIPB3-211ENST00000542953 POTEMA6NI47 508 aa8.29□□□□□ -1.08
NPIPB3-211ENST00000542953 MNX1P50219 401 aaPredicted RBP8.29□□□□□ -1.08
NPIPB3-211ENST00000542953 SHANK2Q9UPX8 1470 aa8.29□□□□□ -1.08
NPIPB3-211ENST00000542953 SRCAPQ6ZRS2 3230 aa8.29□□□□□ -1.08
NPIPB3-211ENST00000542953 ASTLQ6HA08 431 aaPredicted RBP8.27□□□□□ -1.09
NPIPB3-211ENST00000542953 ARHGAP5Q13017 1502 aa8.27□□□□□ -1.09
NPIPB3-211ENST00000542953 ABCC1P33527 1531 aa8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 C7P10643 843 aa8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 PELP1Q8IZL8 1130 aaKnown RBP8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 PCDH10Q9P2E7 1040 aa8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 VWDEQ8N2E2 1590 aa8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 NEURL4Q96JN8 1562 aa8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 A2ML1A8K2U0 1454 aa8.26□□□□□ -1.09
NPIPB3-211ENST00000542953 KIDINS220Q9ULH0 1771 aa8.25□□□□□ -1.09
NPIPB3-211ENST00000542953 POTEGQ6S5H5 508 aa8.25□□□□□ -1.09
NPIPB3-211ENST00000542953 SLC39A7Q92504 469 aa8.25□□□□□ -1.09
NPIPB3-211ENST00000542953 METRNQ9UJH8 293 aa8.25□□□□□ -1.09
NPIPB3-211ENST00000542953 KIF14Q15058 1648 aa8.25□□□□□ -1.09
NPIPB3-211ENST00000542953 TROQ12816 1431 aaPredicted RBP8.24□□□□□ -1.09
NPIPB3-211ENST00000542953 MAMSTRQ6ZN01 415 aa8.24□□□□□ -1.09
NPIPB3-211ENST00000542953 MYT1LQ9UL68 1186 aa8.24□□□□□ -1.09
NPIPB3-211ENST00000542953 DNMT1P26358 1616 aaKnown RBP8.23□□□□□ -1.09
NPIPB3-211ENST00000542953 PLXNC1O60486 1568 aa8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 MED14O60244 1454 aa8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 ATMINO43313 823 aaPredicted RBP8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 POTEAQ6S8J7 498 aa8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 MS4A3Q96HJ5 214 aa8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 CDK11AQ9UQ88 783 aaPredicted RBP8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 SUPT6HQ7KZ85 1726 aaKnown RBP8.22□□□□□ -1.09
NPIPB3-211ENST00000542953 ITSN2Q9NZM3 1697 aa8.21□□□□□ -1.09
NPIPB3-211ENST00000542953 POLR1AO95602 1720 aaPredicted RBP8.21□□□□□ -1.09
NPIPB3-211ENST00000542953 SAMD9LQ8IVG5 1584 aa8.21□□□□□ -1.1
NPIPB3-211ENST00000542953 RNF17Q9BXT8 1623 aaKnown RBP8.21□□□□□ -1.1
NPIPB3-211ENST00000542953 CLTCQ00610 1675 aaKnown RBP8.21□□□□□ -1.1
NPIPB3-211ENST00000542953 CLIP1P30622 1438 aa8.2□□□□□ -1.1
NPIPB3-211ENST00000542953 CDC42BPBQ9Y5S2 1711 aa8.2□□□□□ -1.1
NPIPB3-211ENST00000542953 LRRC7Q96NW7 1537 aa8.2□□□□□ -1.1
NPIPB3-211ENST00000542953 PREX2Q70Z35 1606 aa8.2□□□□□ -1.1
NPIPB3-211ENST00000542953 SYNMO15061 1565 aa8.19□□□□□ -1.1
NPIPB3-211ENST00000542953 FMN1Q68DA7 1419 aa8.19□□□□□ -1.1
NPIPB3-211ENST00000542953 DEPDC5O75140 1603 aa8.18□□□□□ -1.1
NPIPB3-211ENST00000542953 NPHP4O75161 1426 aaPredicted RBP8.18□□□□□ -1.1
NPIPB3-211ENST00000542953 RANGAP1P46060 587 aaPredicted RBP8.17□□□□□ -1.1
NPIPB3-211ENST00000542953 ANKLE2Q86XL3 938 aa8.17□□□□□ -1.1
NPIPB3-211ENST00000542953 TNRQ92752 1358 aa8.17□□□□□ -1.1
NPIPB3-211ENST00000542953 A2MP01023 1474 aa8.17□□□□□ -1.1
NPIPB3-211ENST00000542953 SPAG9O60271 1321 aaKnown RBP8.16□□□□□ -1.1
NPIPB3-211ENST00000542953 POTEJP0CG39 1038 aa8.16□□□□□ -1.1
NPIPB3-211ENST00000542953 ATP7AQ04656 1500 aa8.16□□□□□ -1.1
NPIPB3-211ENST00000542953 FAM135BQ49AJ0 1406 aa8.16□□□□□ -1.1
NPIPB3-211ENST00000542953 INO80Q9ULG1 1556 aaPredicted RBP8.16□□□□□ -1.1
NPIPB3-211ENST00000542953 NLRP1Q9C000 1473 aa8.15□□□□□ -1.1
NPIPB3-211ENST00000542953 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.15□□□□□ -1.1
NPIPB3-211ENST00000542953 SCUBE2Q9NQ36 999 aa8.15□□□□□ -1.1
NPIPB3-211ENST00000542953 STRCP1A6NGW2 1772 aa8.15□□□□□ -1.11
NPIPB3-211ENST00000542953 SETD1AO15047 1707 aaKnown RBP8.15□□□□□ -1.11
NPIPB3-211ENST00000542953 FAM135AQ9P2D6 1515 aa8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 PZPP20742 1482 aa8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 EEA1Q15075 1411 aa8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 KIAA1107Q9UPP5 1409 aa8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 GGT6Q6P531 493 aa8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 THEMISQ8N1K5 641 aaPredicted RBP8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 UPF1Q92900 1129 aaKnown RBP eCLIP8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 CCDC61Q9Y6R9 512 aa8.14□□□□□ -1.11
NPIPB3-211ENST00000542953 SYCP2Q9BX26 1530 aa8.13□□□□□ -1.11
NPIPB3-211ENST00000542953 TSPYL2Q9H2G4 693 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms