RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 NCOA1Q15788 1441 aa31.46■■■□□ 2.63
DDB1-220ENST00000542337 CAMSAP1Q5T5Y3 1602 aa31.42■■■□□ 2.62
DDB1-220ENST00000542337 FGD6Q6ZV73 1430 aa31.41■■■□□ 2.62
DDB1-220ENST00000542337 FBXO31Q5XUX0 539 aaPredicted RBP31.41■■■□□ 2.62
DDB1-220ENST00000542337 PTPN23Q9H3S7 1636 aa31.41■■■□□ 2.62
DDB1-220ENST00000542337 PKD2Q13563 968 aa31.4■■■□□ 2.62
DDB1-220ENST00000542337 TNRQ92752 1358 aa31.4■■■□□ 2.62
DDB1-220ENST00000542337 PZPP20742 1482 aa31.4■■■□□ 2.62
DDB1-220ENST00000542337 MYO3AQ8NEV4 1616 aa31.39■■■□□ 2.62
DDB1-220ENST00000542337 NCKAP5LQ9HCH0 1330 aa31.39■■■□□ 2.62
DDB1-220ENST00000542337 ABCC5O15440 1437 aa31.39■■■□□ 2.62
DDB1-220ENST00000542337 RRP7BPQ9NSQ0 103 aa31.38■■■□□ 2.61
DDB1-220ENST00000542337 DUOX2Q9NRD8 1548 aa31.37■■■□□ 2.61
DDB1-220ENST00000542337 CEP170BQ9Y4F5 1589 aaPredicted RBP31.37■■■□□ 2.61
DDB1-220ENST00000542337 SHANK2Q9UPX8 1470 aa31.36■■■□□ 2.61
DDB1-220ENST00000542337 KIF15Q9NS87 1388 aa31.36■■■□□ 2.61
DDB1-220ENST00000542337 A2ML1A8K2U0 1454 aa31.34■■■□□ 2.61
DDB1-220ENST00000542337 PLA2R1Q13018 1463 aa31.34■■■□□ 2.61
DDB1-220ENST00000542337 TCOF1Q13428 1488 aaKnown RBP31.33■■■□□ 2.61
DDB1-220ENST00000542337 DAPK1P53355 1430 aa31.33■■■□□ 2.61
DDB1-220ENST00000542337 ZNF142P52746 1687 aaPredicted RBP31.33■■■□□ 2.61
DDB1-220ENST00000542337 EIF2AK4Q9P2K8 1649 aaKnown RBP31.32■■■□□ 2.6
DDB1-220ENST00000542337 RNF17Q9BXT8 1623 aaKnown RBP31.31■■■□□ 2.6
DDB1-220ENST00000542337 CHIC2Q9UKJ5 165 aa31.3■■■□□ 2.6
DDB1-220ENST00000542337 ANKRD30AQ9BXX3 1397 aa31.3■■■□□ 2.6
DDB1-220ENST00000542337 FAM50AQ14320 339 aaKnown RBP31.29■■■□□ 2.6
DDB1-220ENST00000542337 ERBINQ96RT1 1412 aa31.27■■■□□ 2.6
DDB1-220ENST00000542337 THEMISQ8N1K5 641 aaPredicted RBP31.27■■■□□ 2.6
DDB1-220ENST00000542337 ABCC3O15438 1527 aa31.27■■■□□ 2.6
DDB1-220ENST00000542337 DNMT1P26358 1616 aaKnown RBP31.26■■■□□ 2.59
DDB1-220ENST00000542337 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.24■■■□□ 2.594e-8■□□□□ 8.6
DDB1-220ENST00000542337 NLRP1Q9C000 1473 aa31.24■■■□□ 2.59
DDB1-220ENST00000542337 CROCC2H7BZ55 1655 aa31.23■■■□□ 2.59
DDB1-220ENST00000542337 ZC3H13Q5T200 1668 aaKnown RBP31.23■■■□□ 2.59
DDB1-220ENST00000542337 KANK1Q14678 1352 aa31.21■■■□□ 2.59
DDB1-220ENST00000542337 ANKLE2Q86XL3 938 aa31.21■■■□□ 2.59
DDB1-220ENST00000542337 MROH1Q8NDA8 1641 aa31.16■■■□□ 2.58
DDB1-220ENST00000542337 ZNF335Q9H4Z2 1342 aaPredicted RBP31.15■■■□□ 2.58
DDB1-220ENST00000542337 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.15■■■□□ 2.585e-11■■□□□ 11.4
DDB1-220ENST00000542337 UGGT1Q9NYU2 1555 aa31.14■■■□□ 2.58
DDB1-220ENST00000542337 LTBP4Q8N2S1 1624 aa31.14■■■□□ 2.58
DDB1-220ENST00000542337 ERVK-7P63135 1459 aa31.14■■■□□ 2.57
DDB1-220ENST00000542337 SPATA31D1Q6ZQQ2 1576 aa31.13■■■□□ 2.57
DDB1-220ENST00000542337 PRDM15P57071 1507 aaPredicted RBP31.11■■■□□ 2.57
DDB1-220ENST00000542337 ARHGAP31Q2M1Z3 1444 aa31.1■■■□□ 2.57
DDB1-220ENST00000542337 IQSEC2Q5JU85 1478 aa31.09■■■□□ 2.57
DDB1-220ENST00000542337 ADGRL2O95490 1459 aa31.08■■■□□ 2.57
DDB1-220ENST00000542337 CEP152O94986 1710 aa31.08■■■□□ 2.57
DDB1-220ENST00000542337 DEPDC5O75140 1603 aa31.02■■■□□ 2.56
DDB1-220ENST00000542337 ANKRD50Q9ULJ7 1429 aa31.02■■■□□ 2.56
DDB1-220ENST00000542337 PPARGC1BQ86YN6 1023 aaKnown RBP31.01■■■□□ 2.55
DDB1-220ENST00000542337 NPHP4O75161 1426 aaPredicted RBP31■■■□□ 2.55
DDB1-220ENST00000542337 STAG3Q9UJ98 1225 aa31■■■□□ 2.55
DDB1-220ENST00000542337 POLR1AO95602 1720 aaPredicted RBP31■■■□□ 2.55
DDB1-220ENST00000542337 NEURL4Q96JN8 1562 aa30.98■■■□□ 2.55
DDB1-220ENST00000542337 CFAP65Q6ZU64 1925 aaKnown RBP30.97■■■□□ 2.55
DDB1-220ENST00000542337 LMTK2Q8IWU2 1503 aa30.97■■■□□ 2.55
DDB1-220ENST00000542337 MED14O60244 1454 aa30.96■■■□□ 2.55
DDB1-220ENST00000542337 UBAP1LF5GYI3 381 aa30.95■■■□□ 2.55
DDB1-220ENST00000542337 EID1Q9Y6B2 187 aa30.94■■■□□ 2.54
DDB1-220ENST00000542337 ITGAEP38570 1179 aa30.93■■■□□ 2.54
DDB1-220ENST00000542337 TXNDC2Q86VQ3 553 aa30.93■■■□□ 2.54
DDB1-220ENST00000542337 VWDEQ8N2E2 1590 aa30.92■■■□□ 2.54
DDB1-220ENST00000542337 ROCK1Q13464 1354 aa30.92■■■□□ 2.54
DDB1-220ENST00000542337 CPS1P31327 1500 aa30.89■■■□□ 2.54
DDB1-220ENST00000542337 IDI1Q13907 227 aa30.89■■■□□ 2.54
DDB1-220ENST00000542337 UBR1Q8IWV7 1749 aa30.87■■■□□ 2.53
DDB1-220ENST00000542337 SLC52A1Q9NWF4 448 aa30.87■■■□□ 2.53
DDB1-220ENST00000542337 SCAF11Q99590 1463 aaKnown RBP30.87■■■□□ 2.53
DDB1-220ENST00000542337 EFCAB6Q5THR3 1501 aa30.85■■■□□ 2.53
DDB1-220ENST00000542337 LTKP29376 864 aa30.85■■■□□ 2.53
DDB1-220ENST00000542337 IQGAP1P46940 1657 aa30.84■■■□□ 2.53
DDB1-220ENST00000542337 SLIT1O75093 1534 aa30.83■■■□□ 2.53
DDB1-220ENST00000542337 NOS1P29475 1434 aa30.82■■■□□ 2.52
DDB1-220ENST00000542337 TMEM2Q9UHN6 1383 aa30.82■■■□□ 2.52
DDB1-220ENST00000542337 TOM1O60784 492 aa30.82■■■□□ 2.52
DDB1-220ENST00000542337 RPRD2Q5VT52 1461 aaKnown RBP30.82■■■□□ 2.52
DDB1-220ENST00000542337 ARHGAP23Q9P227 1491 aa30.82■■■□□ 2.52
DDB1-220ENST00000542337 PIK3C2BO00750 1634 aa30.8■■■□□ 2.52
DDB1-220ENST00000542337 SCAF1Q9H7N4 1312 aaKnown RBP30.75■■■□□ 2.51
DDB1-220ENST00000542337 SYNMO15061 1565 aa30.74■■■□□ 2.51
DDB1-220ENST00000542337 NUP155O75694 1391 aa30.73■■■□□ 2.51
DDB1-220ENST00000542337 TET3O43151 1660 aa30.72■■■□□ 2.51
DDB1-220ENST00000542337 KDM5AP29375 1690 aaKnown RBP30.72■■■□□ 2.51
DDB1-220ENST00000542337 UNC13BO14795 1591 aa30.72■■■□□ 2.51
DDB1-220ENST00000542337 HDGFP51858 240 aaKnown RBP30.72■■■□□ 2.51
DDB1-220ENST00000542337 PIP4K2BP78356 416 aa30.72■■■□□ 2.51
DDB1-220ENST00000542337 BCANQ96GW7 911 aa30.7■■■□□ 2.51
DDB1-220ENST00000542337 ADGRB3O60242 1522 aa30.68■■■□□ 2.5
DDB1-220ENST00000542337 RRBP1Q9P2E9 1410 aaKnown RBP30.67■■■□□ 2.5
DDB1-220ENST00000542337 CHGAP10645 457 aaKnown RBP30.66■■■□□ 2.5
DDB1-220ENST00000542337 GCC2Q8IWJ2 1684 aa30.64■■■□□ 2.5
DDB1-220ENST00000542337 DISP3Q9P2K9 1392 aa30.64■■■□□ 2.5
DDB1-220ENST00000542337 LRRC7Q96NW7 1537 aa30.63■■■□□ 2.49
DDB1-220ENST00000542337 PPP1R15AO75807 674 aaPredicted RBP30.63■■■□□ 2.49
DDB1-220ENST00000542337 SLC26A8Q96RN1 970 aa30.62■■■□□ 2.49
DDB1-220ENST00000542337 IQGAP3Q86VI3 1631 aa30.61■■■□□ 2.49
DDB1-220ENST00000542337 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.6■■■□□ 2.49
DDB1-220ENST00000542337 KCNA6P17658 529 aa30.58■■■□□ 2.49
DDB1-220ENST00000542337 HSPA1LP34931 641 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms