RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 WDR7Q9Y4E6 1490 aa15.07■□□□□ 0
CDH3-203ENST00000542274 SYCP2Q9BX26 1530 aa15.06■□□□□ 0
CDH3-203ENST00000542274 IRX6P78412 446 aaPredicted RBP15.06■□□□□ 0
CDH3-203ENST00000542274 DDX10Q13206 875 aaKnown RBP15.06■□□□□ 0
CDH3-203ENST00000542274 ASXL2Q76L83 1435 aa15.05■□□□□ 0
CDH3-203ENST00000542274 MPHOSPH9Q99550 1183 aa15.05■□□□□ -0
CDH3-203ENST00000542274 ROCK1Q13464 1354 aa15.05■□□□□ -0
CDH3-203ENST00000542274 CYB5RLQ6IPT4 315 aa15.04■□□□□ -0
CDH3-203ENST00000542274 C9orf84Q5VXU9 1444 aa15.04■□□□□ -0
CDH3-203ENST00000542274 NCOA1Q15788 1441 aa15.03■□□□□ -0
CDH3-203ENST00000542274 MBD5Q9P267 1494 aa15.03■□□□□ -0
CDH3-203ENST00000542274 NPM1P06748 294 aaKnown RBP eCLIP15.03■□□□□ -0
CDH3-203ENST00000542274 FKBP8Q14318 412 aa15.02■□□□□ -0
CDH3-203ENST00000542274 RIMBP3CA6NJZ7 1639 aa15.02■□□□□ -0
CDH3-203ENST00000542274 RIMBP3BA6NNM3 1639 aa15.02■□□□□ -0
CDH3-203ENST00000542274 RIMBP3Q9UFD9 1639 aa15.02■□□□□ -0
CDH3-203ENST00000542274 PLCH2O75038 1416 aa15.01□□□□□ -0.01
CDH3-203ENST00000542274 ARHGEF12Q9NZN5 1544 aa15.01□□□□□ -0.01
CDH3-203ENST00000542274 TSPY4P0CV99 314 aa15.01□□□□□ -0.01
CDH3-203ENST00000542274 TSPY10P0CW01 314 aa15.01□□□□□ -0.01
CDH3-203ENST00000542274 ARHGEF5Q12774 1597 aa15□□□□□ -0.01
CDH3-203ENST00000542274 CCDC141Q6ZP82 1450 aa15□□□□□ -0.01
CDH3-203ENST00000542274 ANKRD30AQ9BXX3 1397 aa15□□□□□ -0.01
CDH3-203ENST00000542274 ADGRL2O95490 1459 aa15□□□□□ -0.01
CDH3-203ENST00000542274 HSP90AA2PQ14568 343 aaPredicted RBP15□□□□□ -0.01
CDH3-203ENST00000542274 IPO4Q8TEX9 1081 aaKnown RBP14.98□□□□□ -0.01
CDH3-203ENST00000542274 BRPF3Q9ULD4 1205 aa14.98□□□□□ -0.01
CDH3-203ENST00000542274 NOP58Q9Y2X3 529 aaKnown RBP14.98□□□□□ -0.01
CDH3-203ENST00000542274 GTF2E1P29083 439 aaPredicted RBP14.98□□□□□ -0.01
CDH3-203ENST00000542274 EFCAB2Q5VUJ9 269 aa14.98□□□□□ -0.01
CDH3-203ENST00000542274 ZFP91Q96JP5 570 aaPredicted RBP14.98□□□□□ -0.01
CDH3-203ENST00000542274 SHANK2Q9UPX8 1470 aa14.98□□□□□ -0.01
CDH3-203ENST00000542274 ABCA9Q8IUA7 1624 aa14.97□□□□□ -0.01
CDH3-203ENST00000542274 SLC4A1APQ9BWU0 796 aaKnown RBP14.96□□□□□ -0.01
CDH3-203ENST00000542274 CNKSR2Q8WXI2 1034 aa14.96□□□□□ -0.01
CDH3-203ENST00000542274 KIF15Q9NS87 1388 aa14.96□□□□□ -0.02
CDH3-203ENST00000542274 TAOK2Q9UL54 1235 aa14.95□□□□□ -0.02
CDH3-203ENST00000542274 ANKRD50Q9ULJ7 1429 aa14.95□□□□□ -0.02
CDH3-203ENST00000542274 ABCC1P33527 1531 aa14.95□□□□□ -0.02
CDH3-203ENST00000542274 TRAPPC8Q9Y2L5 1435 aa14.95□□□□□ -0.02
CDH3-203ENST00000542274 RRP9O43818 475 aaKnown RBP14.94□□□□□ -0.02
CDH3-203ENST00000542274 L3MBTL2Q969R5 705 aa14.94□□□□□ -0.02
CDH3-203ENST00000542274 FANCAO15360 1455 aa14.93□□□□□ -0.02
CDH3-203ENST00000542274 AFAP1Q8N556 730 aa14.92□□□□□ -0.02
CDH3-203ENST00000542274 PLEKHH2Q8IVE3 1493 aa14.92□□□□□ -0.02
CDH3-203ENST00000542274 AMER1Q5JTC6 1135 aaPredicted RBP14.92□□□□□ -0.02
CDH3-203ENST00000542274 KIAA1107Q9UPP5 1409 aa14.92□□□□□ -0.02
CDH3-203ENST00000542274 PRDM4Q9UKN5 801 aa14.91□□□□□ -0.02
CDH3-203ENST00000542274 PZPP20742 1482 aa14.9□□□□□ -0.02
CDH3-203ENST00000542274 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
CDH3-203ENST00000542274 PAK3O75914 559 aaPredicted RBP14.9□□□□□ -0.02
CDH3-203ENST00000542274 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.9□□□□□ -0.02
CDH3-203ENST00000542274 MAST1Q9Y2H9 1570 aa14.89□□□□□ -0.03
CDH3-203ENST00000542274 ARAP3Q8WWN8 1544 aa14.88□□□□□ -0.03
CDH3-203ENST00000542274 WASHC2CQ9Y4E1 1318 aa14.88□□□□□ -0.03
CDH3-203ENST00000542274 NBPF8Q3BBV2 869 aa14.88□□□□□ -0.03
CDH3-203ENST00000542274 ADGRL1O94910 1474 aa14.88□□□□□ -0.03
CDH3-203ENST00000542274 CD109Q6YHK3 1445 aa14.87□□□□□ -0.03
CDH3-203ENST00000542274 HSPA5P11021 654 aaKnown RBP14.87□□□□□ -0.03
CDH3-203ENST00000542274 CANXP27824 592 aaKnown RBP14.87□□□□□ -0.03
CDH3-203ENST00000542274 RGS3P49796 1198 aa14.87□□□□□ -0.03
CDH3-203ENST00000542274 STAC3Q96MF2 364 aa14.87□□□□□ -0.03
CDH3-203ENST00000542274 NUP155O75694 1391 aa14.87□□□□□ -0.03
CDH3-203ENST00000542274 SCAPERQ9BY12 1400 aa14.87□□□□□ -0.03
CDH3-203ENST00000542274 PKD2Q13563 968 aa14.86□□□□□ -0.03
CDH3-203ENST00000542274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.86□□□□□ -0.03
CDH3-203ENST00000542274 SPAG9O60271 1321 aaKnown RBP14.85□□□□□ -0.03
CDH3-203ENST00000542274 SECISBP2LQ93073 1101 aaKnown RBP14.85□□□□□ -0.03
CDH3-203ENST00000542274 BCCIPQ9P287 314 aaKnown RBP eCLIP14.85□□□□□ -0.03
CDH3-203ENST00000542274 PLXNC1O60486 1568 aa14.85□□□□□ -0.03
CDH3-203ENST00000542274 WASHC2AQ641Q2 1341 aa14.84□□□□□ -0.03
CDH3-203ENST00000542274 RPRD2Q5VT52 1461 aaKnown RBP14.84□□□□□ -0.03
CDH3-203ENST00000542274 ZFYVE16Q7Z3T8 1539 aa14.83□□□□□ -0.04
CDH3-203ENST00000542274 TEX14Q8IWB6 1497 aa14.81□□□□□ -0.04
CDH3-203ENST00000542274 TEX2Q8IWB9 1127 aa14.81□□□□□ -0.04
CDH3-203ENST00000542274 FAM43AQ8N2R8 423 aa14.81□□□□□ -0.04
CDH3-203ENST00000542274 CDK11BP21127 795 aaKnown RBP14.8□□□□□ -0.04
CDH3-203ENST00000542274 DUOX2Q9NRD8 1548 aa14.8□□□□□ -0.04
CDH3-203ENST00000542274 TSPOAP1O95153 1857 aa14.8□□□□□ -0.04
CDH3-203ENST00000542274 ATP7AQ04656 1500 aa14.79□□□□□ -0.04
CDH3-203ENST00000542274 FTSJ3Q8IY81 847 aaKnown RBP14.79□□□□□ -0.04
CDH3-203ENST00000542274 INO80Q9ULG1 1556 aaPredicted RBP14.79□□□□□ -0.04
CDH3-203ENST00000542274 EIF4G2P78344 907 aaKnown RBP eCLIP14.78□□□□□ -0.04
CDH3-203ENST00000542274 CALD1Q05682 793 aaKnown RBP14.78□□□□□ -0.04
CDH3-203ENST00000542274 FAM135AQ9P2D6 1515 aa14.78□□□□□ -0.04
CDH3-203ENST00000542274 NEFMP07197 916 aa14.78□□□□□ -0.04
CDH3-203ENST00000542274 FAM69CQ0P6D2 419 aa14.78□□□□□ -0.04
CDH3-203ENST00000542274 CNGB1Q14028 1251 aaPredicted RBP14.78□□□□□ -0.04
CDH3-203ENST00000542274 KDM5DQ9BY66 1539 aa14.78□□□□□ -0.04
CDH3-203ENST00000542274 UNC13BO14795 1591 aa14.77□□□□□ -0.05
CDH3-203ENST00000542274 ANP32CO43423 234 aa14.77□□□□□ -0.05
CDH3-203ENST00000542274 HSP90AA1P07900 732 aaKnown RBP14.77□□□□□ -0.05
CDH3-203ENST00000542274 HSP90B1P14625 803 aaKnown RBP14.77□□□□□ -0.05
CDH3-203ENST00000542274 TPRNQ4KMQ1 711 aa14.76□□□□□ -0.05
CDH3-203ENST00000542274 MAP3K4Q9Y6R4 1608 aa14.76□□□□□ -0.05
CDH3-203ENST00000542274 KIDINS220Q9ULH0 1771 aa14.76□□□□□ -0.05
CDH3-203ENST00000542274 RAPGEF3O95398 923 aa14.76□□□□□ -0.05
CDH3-203ENST00000542274 CHRM1P11229 460 aaPredicted RBP14.76□□□□□ -0.05
CDH3-203ENST00000542274 CFAP74Q9C0B2 1584 aa14.76□□□□□ -0.05
CDH3-203ENST00000542274 FBXO3Q9UK99 471 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms