RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 TROQ12816 1431 aaPredicted RBP11.34□□□□□ -0.59
CCDC60-204ENST00000539847 FER1L4A9Z1Z3 1794 aa11.33□□□□□ -0.59
CCDC60-204ENST00000539847 KDM5CP41229 1560 aa11.33□□□□□ -0.6
CCDC60-204ENST00000539847 SIGLEC1Q9BZZ2 1709 aa11.33□□□□□ -0.6
CCDC60-204ENST00000539847 SETD1BQ9UPS6 1966 aaKnown RBP11.33□□□□□ -0.6
CCDC60-204ENST00000539847 CLIP1P30622 1438 aa11.33□□□□□ -0.6
CCDC60-204ENST00000539847 ZNF316A6NFI3 1004 aaPredicted RBP11.32□□□□□ -0.6
CCDC60-204ENST00000539847 MLH3Q9UHC1 1453 aa11.32□□□□□ -0.6
CCDC60-204ENST00000539847 PREX1Q8TCU6 1659 aa11.31□□□□□ -0.6
CCDC60-204ENST00000539847 PLEKHG5O94827 1062 aa11.31□□□□□ -0.6
CCDC60-204ENST00000539847 MLECQ14165 292 aa11.31□□□□□ -0.6
CCDC60-204ENST00000539847 UHRF1BP1Q6BDS2 1440 aa11.31□□□□□ -0.6
CCDC60-204ENST00000539847 CLSPNQ9HAW4 1339 aa11.31□□□□□ -0.6
CCDC60-204ENST00000539847 KIF14Q15058 1648 aa11.31□□□□□ -0.6
CCDC60-204ENST00000539847 AGLP35573 1532 aa11.3□□□□□ -0.6
CCDC60-204ENST00000539847 MYO5CQ9NQX4 1742 aa11.3□□□□□ -0.6
CCDC60-204ENST00000539847 ARHGAP35Q9NRY4 1499 aa11.3□□□□□ -0.6
CCDC60-204ENST00000539847 PTPRTO14522 1441 aa11.29□□□□□ -0.6
CCDC60-204ENST00000539847 ZBTB47Q9UFB7 747 aaPredicted RBP11.29□□□□□ -0.6
CCDC60-204ENST00000539847 CNTLNQ9NXG0 1405 aa11.28□□□□□ -0.6
CCDC60-204ENST00000539847 UBTFP17480 764 aaKnown RBP11.28□□□□□ -0.6
CCDC60-204ENST00000539847 AFAP1Q8N556 730 aa11.28□□□□□ -0.6
CCDC60-204ENST00000539847 ARHGAP5Q13017 1502 aa11.28□□□□□ -0.6
CCDC60-204ENST00000539847 TRAPPC8Q9Y2L5 1435 aa11.26□□□□□ -0.61
CCDC60-204ENST00000539847 IQSEC2Q5JU85 1478 aa11.26□□□□□ -0.61
CCDC60-204ENST00000539847 DIP2CQ9Y2E4 1556 aa11.26□□□□□ -0.61
CCDC60-204ENST00000539847 SPRYD3Q8NCJ5 442 aa11.26□□□□□ -0.61
CCDC60-204ENST00000539847 CCDC18Q5T9S5 1454 aa11.25□□□□□ -0.61
CCDC60-204ENST00000539847 CEBPAP49715 358 aaPredicted RBP11.25□□□□□ -0.61
CCDC60-204ENST00000539847 ESF1Q9H501 851 aaKnown RBP11.24□□□□□ -0.61
CCDC60-204ENST00000539847 ATP1B4Q9UN42 357 aaPredicted RBP11.24□□□□□ -0.61
CCDC60-204ENST00000539847 NPATQ14207 1427 aa11.24□□□□□ -0.61
CCDC60-204ENST00000539847 CASKIN1Q8WXD9 1431 aa11.24□□□□□ -0.61
CCDC60-204ENST00000539847 CHGAP10645 457 aaKnown RBP11.23□□□□□ -0.61
CCDC60-204ENST00000539847 TSHZ2Q9NRE2 1034 aa11.23□□□□□ -0.61
CCDC60-204ENST00000539847 ABCC1P33527 1531 aa11.23□□□□□ -0.61
CCDC60-204ENST00000539847 STRCQ7RTU9 1775 aa11.23□□□□□ -0.61
CCDC60-204ENST00000539847 PREX2Q70Z35 1606 aa11.21□□□□□ -0.61
CCDC60-204ENST00000539847 ABCA6Q8N139 1617 aa11.21□□□□□ -0.61
CCDC60-204ENST00000539847 NCOA1Q15788 1441 aa11.21□□□□□ -0.61
CCDC60-204ENST00000539847 MYT1LQ9UL68 1186 aa11.21□□□□□ -0.61
CCDC60-204ENST00000539847 CEP162Q5TB80 1403 aa11.19□□□□□ -0.62
CCDC60-204ENST00000539847 KIAA1107Q9UPP5 1409 aa11.19□□□□□ -0.62
CCDC60-204ENST00000539847 CDC42BPBQ9Y5S2 1711 aa11.19□□□□□ -0.62
CCDC60-204ENST00000539847 SOCS7O14512 581 aa11.19□□□□□ -0.62
CCDC60-204ENST00000539847 DISP3Q9P2K9 1392 aa11.18□□□□□ -0.62
CCDC60-204ENST00000539847 C3P01024 1663 aa11.18□□□□□ -0.62
CCDC60-204ENST00000539847 LTBP4Q8N2S1 1624 aa11.18□□□□□ -0.62
CCDC60-204ENST00000539847 PLEKHH2Q8IVE3 1493 aa11.18□□□□□ -0.62
CCDC60-204ENST00000539847 FYCO1Q9BQS8 1478 aa11.18□□□□□ -0.62
CCDC60-204ENST00000539847 NUBP1P53384 320 aa11.17□□□□□ -0.62
CCDC60-204ENST00000539847 MROH2AA6NES4 1674 aa11.17□□□□□ -0.62
CCDC60-204ENST00000539847 ITSN2Q9NZM3 1697 aa11.17□□□□□ -0.62
CCDC60-204ENST00000539847 KIDINS220Q9ULH0 1771 aa11.16□□□□□ -0.62
CCDC60-204ENST00000539847 PLA2R1Q13018 1463 aa11.16□□□□□ -0.62
CCDC60-204ENST00000539847 SAMD9LQ8IVG5 1584 aa11.16□□□□□ -0.62
CCDC60-204ENST00000539847 ZMYM3Q14202 1370 aa11.16□□□□□ -0.62
CCDC60-204ENST00000539847 SPAG9O60271 1321 aaKnown RBP11.15□□□□□ -0.62
CCDC60-204ENST00000539847 RNF25Q96BH1 459 aaPredicted RBP11.15□□□□□ -0.62
CCDC60-204ENST00000539847 SPDYE1Q8NFV5 336 aaPredicted RBP11.14□□□□□ -0.63
CCDC60-204ENST00000539847 LRRIQ1Q96JM4 1722 aa11.14□□□□□ -0.63
CCDC60-204ENST00000539847 GPATCH8Q9UKJ3 1502 aaKnown RBP11.14□□□□□ -0.63
CCDC60-204ENST00000539847 PLXNC1O60486 1568 aa11.13□□□□□ -0.63
CCDC60-204ENST00000539847 GSE1Q14687 1217 aa11.13□□□□□ -0.63
CCDC60-204ENST00000539847 CLEC11AQ9Y240 323 aa11.13□□□□□ -0.63
CCDC60-204ENST00000539847 CDC42BPAQ5VT25 1732 aa11.12□□□□□ -0.63
CCDC60-204ENST00000539847 DCAF8Q5TAQ9 597 aa11.12□□□□□ -0.63
CCDC60-204ENST00000539847 ILDR2Q71H61 639 aa11.12□□□□□ -0.63
CCDC60-204ENST00000539847 AKT1S1Q96B36 256 aa11.12□□□□□ -0.63
CCDC60-204ENST00000539847 CAMSAP1Q5T5Y3 1602 aa11.12□□□□□ -0.63
CCDC60-204ENST00000539847 TCOF1Q13428 1488 aaKnown RBP11.12□□□□□ -0.63
CCDC60-204ENST00000539847 ATP7AQ04656 1500 aa11.11□□□□□ -0.63
CCDC60-204ENST00000539847 SYCP2Q9BX26 1530 aa11.11□□□□□ -0.63
CCDC60-204ENST00000539847 NBR1Q14596 966 aa11.11□□□□□ -0.63
CCDC60-204ENST00000539847 CREBZFQ9NS37 354 aa11.11□□□□□ -0.63
CCDC60-204ENST00000539847 CFDP1Q9UEE9 299 aaPredicted RBP11.11□□□□□ -0.63
CCDC60-204ENST00000539847 A2MP01023 1474 aa11.11□□□□□ -0.63
CCDC60-204ENST00000539847 SPATA31D1Q6ZQQ2 1576 aa11.11□□□□□ -0.63
CCDC60-204ENST00000539847 PTPRKQ15262 1439 aa11.1□□□□□ -0.63
CCDC60-204ENST00000539847 INO80Q9ULG1 1556 aaPredicted RBP11.1□□□□□ -0.63
CCDC60-204ENST00000539847 ZNF142P52746 1687 aaPredicted RBP11.1□□□□□ -0.63
CCDC60-204ENST00000539847 RTEL1-TNFRSF6BF6WH68 1400 aa11.09□□□□□ -0.63
CCDC60-204ENST00000539847 FAM135AQ9P2D6 1515 aa11.09□□□□□ -0.63
CCDC60-204ENST00000539847 CCNB3Q8WWL7 1395 aa11.09□□□□□ -0.63
CCDC60-204ENST00000539847 HS6ST3Q8IZP7 471 aa11.09□□□□□ -0.63
CCDC60-204ENST00000539847 RBM42Q9BTD8 480 aaKnown RBP11.09□□□□□ -0.63
CCDC60-204ENST00000539847 PRR29P0C7W0 189 aa11.08□□□□□ -0.64
CCDC60-204ENST00000539847 HNRNPMP52272 730 aaKnown RBP eCLIP11.08□□□□□ -0.64
CCDC60-204ENST00000539847 ZNF777Q9ULD5 760 aaPredicted RBP11.08□□□□□ -0.64
CCDC60-204ENST00000539847 CEP170BQ9Y4F5 1589 aaPredicted RBP11.07□□□□□ -0.64
CCDC60-204ENST00000539847 MNX1P50219 401 aaPredicted RBP11.07□□□□□ -0.64
CCDC60-204ENST00000539847 REM2Q8IYK8 340 aaPredicted RBP11.07□□□□□ -0.64
CCDC60-204ENST00000539847 ZNF335Q9H4Z2 1342 aaPredicted RBP11.06□□□□□ -0.64
CCDC60-204ENST00000539847 NCKAP5LQ9HCH0 1330 aa11.06□□□□□ -0.64
CCDC60-204ENST00000539847 A2ML1A8K2U0 1454 aa11.06□□□□□ -0.64
CCDC60-204ENST00000539847 MYO3AQ8NEV4 1616 aa11.06□□□□□ -0.64
CCDC60-204ENST00000539847 MTUS2Q5JR59 1369 aa11.05□□□□□ -0.64
CCDC60-204ENST00000539847 UBAP1LF5GYI3 381 aa11.05□□□□□ -0.64
CCDC60-204ENST00000539847 RSPH4AQ5TD94 716 aa11.05□□□□□ -0.64
CCDC60-204ENST00000539847 MBD5Q9P267 1494 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms