RNA–Protein interactions for RNA: ENST00000538862.6

CDCA3-207, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA3, Length 1,943 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-207ENST00000538862 PTPRMP28827 1452 aa20.45■□□□□ 0.86
CDCA3-207ENST00000538862 PLPPR3Q6T4P5 718 aa20.43■□□□□ 0.86
CDCA3-207ENST00000538862 FER1L4A9Z1Z3 1794 aa20.42■□□□□ 0.86
CDCA3-207ENST00000538862 CHIC2Q9UKJ5 165 aa20.42■□□□□ 0.86
CDCA3-207ENST00000538862 REREQ9P2R6 1566 aa20.42■□□□□ 0.86
CDCA3-207ENST00000538862 CCDC141Q6ZP82 1450 aa20.4■□□□□ 0.86
CDCA3-207ENST00000538862 ROCK1Q13464 1354 aa20.4■□□□□ 0.86
CDCA3-207ENST00000538862 TRIM52Q96A61 297 aa20.39■□□□□ 0.85
CDCA3-207ENST00000538862 MPHOSPH9Q99550 1183 aa20.37■□□□□ 0.85
CDCA3-207ENST00000538862 ARHGEF5Q12774 1597 aa20.36■□□□□ 0.85
CDCA3-207ENST00000538862 AGLP35573 1532 aa20.36■□□□□ 0.85
CDCA3-207ENST00000538862 DNMT1P26358 1616 aaKnown RBP20.35■□□□□ 0.85
CDCA3-207ENST00000538862 DAPK1P53355 1430 aa20.35■□□□□ 0.85
CDCA3-207ENST00000538862 A2MP01023 1474 aa20.35■□□□□ 0.85
CDCA3-207ENST00000538862 ADGBQ8N7X0 1667 aa20.34■□□□□ 0.85
CDCA3-207ENST00000538862 PLXNC1O60486 1568 aa20.33■□□□□ 0.85
CDCA3-207ENST00000538862 RTEL1-TNFRSF6BF6WH68 1400 aa20.33■□□□□ 0.84
CDCA3-207ENST00000538862 RSPH4AQ5TD94 716 aa20.32■□□□□ 0.84
CDCA3-207ENST00000538862 ABCC5O15440 1437 aa20.31■□□□□ 0.84
CDCA3-207ENST00000538862 TSPY4P0CV99 314 aa20.31■□□□□ 0.84
CDCA3-207ENST00000538862 TSPY10P0CW01 314 aa20.31■□□□□ 0.84
CDCA3-207ENST00000538862 CEBPAP49715 358 aaPredicted RBP20.3■□□□□ 0.84
CDCA3-207ENST00000538862 HSPA5P11021 654 aaKnown RBP20.27■□□□□ 0.84
CDCA3-207ENST00000538862 EIF4G2P78344 907 aaKnown RBP eCLIP20.27■□□□□ 0.84
CDCA3-207ENST00000538862 ANKRD30BQ9BXX2 1392 aa20.27■□□□□ 0.84
CDCA3-207ENST00000538862 GGT6Q6P531 493 aa20.26■□□□□ 0.83
CDCA3-207ENST00000538862 RPRD2Q5VT52 1461 aaKnown RBP20.26■□□□□ 0.83
CDCA3-207ENST00000538862 DHX29Q7Z478 1369 aaKnown RBP20.26■□□□□ 0.83
CDCA3-207ENST00000538862 ESF1Q9H501 851 aaKnown RBP20.25■□□□□ 0.83
CDCA3-207ENST00000538862 MAST1Q9Y2H9 1570 aa20.25■□□□□ 0.83
CDCA3-207ENST00000538862 L3MBTL2Q969R5 705 aa20.25■□□□□ 0.83
CDCA3-207ENST00000538862 CROCC2H7BZ55 1655 aa20.25■□□□□ 0.83
CDCA3-207ENST00000538862 WASHC2AQ641Q2 1341 aa20.24■□□□□ 0.83
CDCA3-207ENST00000538862 C3P01024 1663 aa20.23■□□□□ 0.83
CDCA3-207ENST00000538862 CLTCQ00610 1675 aaKnown RBP20.22■□□□□ 0.83
CDCA3-207ENST00000538862 KIF3BO15066 747 aa20.21■□□□□ 0.83
CDCA3-207ENST00000538862 FKBP8Q14318 412 aa20.21■□□□□ 0.83
CDCA3-207ENST00000538862 NEFLP07196 543 aa20.19■□□□□ 0.82
CDCA3-207ENST00000538862 LMTK3Q96Q04 1460 aa20.19■□□□□ 0.82
CDCA3-207ENST00000538862 SHANK2Q9UPX8 1470 aa20.18■□□□□ 0.82
CDCA3-207ENST00000538862 FOXD1Q16676 465 aa20.17■□□□□ 0.82
CDCA3-207ENST00000538862 TSHZ2Q9NRE2 1034 aa20.17■□□□□ 0.82
CDCA3-207ENST00000538862 CNTLNQ9NXG0 1405 aa20.17■□□□□ 0.82
CDCA3-207ENST00000538862 SLC4A1APQ9BWU0 796 aaKnown RBP20.17■□□□□ 0.82
CDCA3-207ENST00000538862 NCOA1Q15788 1441 aa20.16■□□□□ 0.82
CDCA3-207ENST00000538862 ADGRL2O95490 1459 aa20.16■□□□□ 0.82
CDCA3-207ENST00000538862 MROH2AA6NES4 1674 aa20.16■□□□□ 0.82
CDCA3-207ENST00000538862 HSPA2P54652 639 aa20.15■□□□□ 0.82
CDCA3-207ENST00000538862 ZMYM3Q14202 1370 aa20.14■□□□□ 0.82
CDCA3-207ENST00000538862 KIF15Q9NS87 1388 aa20.14■□□□□ 0.82
CDCA3-207ENST00000538862 PREX1Q8TCU6 1659 aa20.14■□□□□ 0.81
CDCA3-207ENST00000538862 PZPP20742 1482 aa20.13■□□□□ 0.81
CDCA3-207ENST00000538862 SETD1BQ9UPS6 1966 aaKnown RBP20.13■□□□□ 0.81
CDCA3-207ENST00000538862 CCDC7Q96M83 1385 aa20.13■□□□□ 0.81
CDCA3-207ENST00000538862 DUOX2Q9NRD8 1548 aa20.12■□□□□ 0.81
CDCA3-207ENST00000538862 NBPF8Q3BBV2 869 aa20.11■□□□□ 0.81
CDCA3-207ENST00000538862 POLR1AO95602 1720 aaPredicted RBP20.11■□□□□ 0.81
CDCA3-207ENST00000538862 SPATA31E1Q6ZUB1 1445 aa20.1■□□□□ 0.81
CDCA3-207ENST00000538862 EIF2AK4Q9P2K8 1649 aaKnown RBP20.1■□□□□ 0.81
CDCA3-207ENST00000538862 RNF17Q9BXT8 1623 aaKnown RBP20.09■□□□□ 0.81
CDCA3-207ENST00000538862 BCANQ96GW7 911 aa20.09■□□□□ 0.81
CDCA3-207ENST00000538862 KDM5DQ9BY66 1539 aa20.08■□□□□ 0.81
CDCA3-207ENST00000538862 ANKRD30AQ9BXX3 1397 aa20.08■□□□□ 0.81
CDCA3-207ENST00000538862 WASHC2CQ9Y4E1 1318 aa20.08■□□□□ 0.81
CDCA3-207ENST00000538862 PPP6R1Q9UPN7 881 aa20.08■□□□□ 0.81
CDCA3-207ENST00000538862 MROH1Q8NDA8 1641 aa20.07■□□□□ 0.8
CDCA3-207ENST00000538862 C11orf95C9JLR9 678 aaPredicted RBP20.07■□□□□ 0.8
CDCA3-207ENST00000538862 HNRNPUQ00839 825 aaKnown RBP eCLIP20.07■□□□□ 0.8
CDCA3-207ENST00000538862 UHRF1BP1Q6BDS2 1440 aa20.07■□□□□ 0.8
CDCA3-207ENST00000538862 ERBINQ96RT1 1412 aa20.05■□□□□ 0.8
CDCA3-207ENST00000538862 PRKRIP1Q9H875 184 aaPredicted RBP20.04■□□□□ 0.8
CDCA3-207ENST00000538862 CEP152O94986 1710 aa20.04■□□□□ 0.8
CDCA3-207ENST00000538862 NPATQ14207 1427 aa20.03■□□□□ 0.8
CDCA3-207ENST00000538862 FBXO31Q5XUX0 539 aaPredicted RBP20.03■□□□□ 0.8
CDCA3-207ENST00000538862 ABCC3O15438 1527 aa20.02■□□□□ 0.8
CDCA3-207ENST00000538862 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.02■□□□□ 0.87e-9■■■□□ 17.5
CDCA3-207ENST00000538862 ANKRD50Q9ULJ7 1429 aa20.01■□□□□ 0.79
CDCA3-207ENST00000538862 CFAP65Q6ZU64 1925 aaKnown RBP20.01■□□□□ 0.79
CDCA3-207ENST00000538862 FAM135AQ9P2D6 1515 aa20.01■□□□□ 0.79
CDCA3-207ENST00000538862 KIF7Q2M1P5 1343 aa20■□□□□ 0.79
CDCA3-207ENST00000538862 MYO3AQ8NEV4 1616 aa20■□□□□ 0.79
CDCA3-207ENST00000538862 ZC3H13Q5T200 1668 aaKnown RBP20■□□□□ 0.79
CDCA3-207ENST00000538862 PRDM15P57071 1507 aaPredicted RBP19.99■□□□□ 0.79
CDCA3-207ENST00000538862 PRKCSHP14314 528 aaPredicted RBP19.99■□□□□ 0.79
CDCA3-207ENST00000538862 DEPDC5O75140 1603 aa19.98■□□□□ 0.79
CDCA3-207ENST00000538862 PKD2Q13563 968 aa19.98■□□□□ 0.79
CDCA3-207ENST00000538862 CAMSAP1Q5T5Y3 1602 aa19.97■□□□□ 0.79
CDCA3-207ENST00000538862 STRCQ7RTU9 1775 aa19.95■□□□□ 0.78
CDCA3-207ENST00000538862 CCDC184Q52MB2 194 aa19.94■□□□□ 0.78
CDCA3-207ENST00000538862 ERICH6BQ5W0A0 696 aa19.94■□□□□ 0.78
CDCA3-207ENST00000538862 TNRQ92752 1358 aa19.94■□□□□ 0.78
CDCA3-207ENST00000538862 CEP170BQ9Y4F5 1589 aaPredicted RBP19.94■□□□□ 0.78
CDCA3-207ENST00000538862 ZNF142P52746 1687 aaPredicted RBP19.93■□□□□ 0.78
CDCA3-207ENST00000538862 ERICH6Q7L0X2 663 aa19.93■□□□□ 0.78
CDCA3-207ENST00000538862 MRS2Q9HD23 443 aa19.92■□□□□ 0.78
CDCA3-207ENST00000538862 KANK1Q14678 1352 aa19.91■□□□□ 0.78
CDCA3-207ENST00000538862 NUP155O75694 1391 aa19.91■□□□□ 0.78
CDCA3-207ENST00000538862 USP47Q96K76 1375 aa19.91■□□□□ 0.78
CDCA3-207ENST00000538862 ZBED9Q6R2W3 1325 aa19.9■□□□□ 0.78
CDCA3-207ENST00000538862 VWDEQ8N2E2 1590 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms