RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 RRP7AQ9Y3A4 280 aaKnown RBP6.81□□□□□ -1.32
LRP6-203ENST00000538239 ST20-MTHFSA0A0A6YYL1 179 aa6.81□□□□□ -1.32
LRP6-203ENST00000538239 NGEFQ8N5V2 710 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 PANK3Q9H999 370 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 SMC4Q9NTJ3 1288 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 PPP4R2Q9NY27 417 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 NUTM2GQ5VZR2 741 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 KLHL34Q8N239 644 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 MCCP23508 829 aa6.8□□□□□ -1.32
LRP6-203ENST00000538239 SYNJ2O15056 1496 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 AFAP1Q8N556 730 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 KIF15Q9NS87 1388 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 FRAT2O75474 233 aaPredicted RBP6.79□□□□□ -1.32
LRP6-203ENST00000538239 SPRYD3Q8NCJ5 442 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 MYOM3Q5VTT5 1437 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 LMOD3Q0VAK6 560 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 CUX1P39880 1505 aa6.79□□□□□ -1.32
LRP6-203ENST00000538239 GNL2Q13823 731 aaKnown RBP6.78□□□□□ -1.32
LRP6-203ENST00000538239 KIAA1211Q6ZU35 1233 aa6.78□□□□□ -1.32
LRP6-203ENST00000538239 DNAJC5BQ9UF47 199 aa6.78□□□□□ -1.32
LRP6-203ENST00000538239 CGNL1Q0VF96 1302 aa6.78□□□□□ -1.32
LRP6-203ENST00000538239 PLCB2Q00722 1185 aa6.78□□□□□ -1.32
LRP6-203ENST00000538239 TOPBP1Q92547 1522 aa6.78□□□□□ -1.32
LRP6-203ENST00000538239 CCER2I3L3R5 266 aa6.78□□□□□ -1.32
LRP6-203ENST00000538239 PTMAP06454 111 aaKnown RBP6.77□□□□□ -1.33
LRP6-203ENST00000538239 TTC5Q8N0Z6 440 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 CFTRP13569 1480 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 ELL2O00472 640 aaPredicted RBP6.77□□□□□ -1.33
LRP6-203ENST00000538239 CLUAP1Q96AJ1 413 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 NCBP3Q53F19 620 aaKnown RBP6.77□□□□□ -1.33
LRP6-203ENST00000538239 CHMP4AQ9BY43 222 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 RCAN3Q9UKA8 241 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 NECTIN2Q92692 538 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 SYNJ1O43426 1573 aa6.77□□□□□ -1.33
LRP6-203ENST00000538239 TRIM6-TRIM34B2RNG4 842 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 EIF2S2P20042 333 aaKnown RBP6.76□□□□□ -1.33
LRP6-203ENST00000538239 TEFQ10587 303 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 TMEM132EQ6IEE7 984 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 TXNDC2Q86VQ3 553 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 GPATCH3Q96I76 525 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 HSCBQ8IWL3 235 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 PIP4K2BP78356 416 aa6.76□□□□□ -1.33
LRP6-203ENST00000538239 PROSER2Q86WR7 435 aaPredicted RBP6.76□□□□□ -1.33
LRP6-203ENST00000538239 DHX57Q6P158 1386 aaKnown RBP6.76□□□□□ -1.33
LRP6-203ENST00000538239 ESCO1Q5FWF5 840 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 TRIM44Q96DX7 344 aaPredicted RBP6.75□□□□□ -1.33
LRP6-203ENST00000538239 CABP2Q9NPB3 220 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 GOLGA6L4A6NEF3 574 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 NUTM2BA6NNL0 878 aaPredicted RBP6.75□□□□□ -1.33
LRP6-203ENST00000538239 NUTM2EB1AL46 878 aaPredicted RBP6.75□□□□□ -1.33
LRP6-203ENST00000538239 NUTM2AQ8IVF1 878 aaPredicted RBP6.75□□□□□ -1.33
LRP6-203ENST00000538239 USP35Q9P2H5 1018 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 FGD6Q6ZV73 1430 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 USP47Q96K76 1375 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 NCOA2Q15596 1464 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 RAPGEF3O95398 923 aa6.75□□□□□ -1.33
LRP6-203ENST00000538239 HMGXB3Q12766 1538 aa6.74□□□□□ -1.33
LRP6-203ENST00000538239 FBXW7Q969H0 707 aa6.74□□□□□ -1.33
LRP6-203ENST00000538239 RWDD1Q9H446 243 aaPredicted RBP6.74□□□□□ -1.33
LRP6-203ENST00000538239 POLA1P09884 1462 aaPredicted RBP6.74□□□□□ -1.33
LRP6-203ENST00000538239 AMER1Q5JTC6 1135 aaPredicted RBP6.74□□□□□ -1.33
LRP6-203ENST00000538239 NLRP13Q86W25 1043 aa6.74□□□□□ -1.33
LRP6-203ENST00000538239 CENPJQ9HC77 1338 aaPredicted RBP6.74□□□□□ -1.33
LRP6-203ENST00000538239 KIF21BO75037 1637 aa6.74□□□□□ -1.33
LRP6-203ENST00000538239 HSP90B1P14625 803 aaKnown RBP6.74□□□□□ -1.33
LRP6-203ENST00000538239 TOMM22Q9NS69 142 aa6.74□□□□□ -1.33
LRP6-203ENST00000538239 NLRP2Q9NX02 1062 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 HMMRO75330 724 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 CASKIN1Q8WXD9 1431 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 FYCO1Q9BQS8 1478 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 DNMBPQ6XZF7 1577 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 LRRC9Q6ZRR7 1453 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 SCAPERQ9BY12 1400 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 ANKRD50Q9ULJ7 1429 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 HDAC5Q9UQL6 1122 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 MYBBP1AQ9BQG0 1328 aaKnown RBP6.73□□□□□ -1.33
LRP6-203ENST00000538239 DIAPH1O60610 1272 aaKnown RBP6.73□□□□□ -1.33
LRP6-203ENST00000538239 BCL2L13Q9BXK5 485 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 PMFBP1Q8TBY8 1022 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 STRN4Q9NRL3 753 aa6.73□□□□□ -1.33
LRP6-203ENST00000538239 RAPGEF4Q8WZA2 1011 aa6.72□□□□□ -1.33
LRP6-203ENST00000538239 ANP32EQ9BTT0 268 aa6.72□□□□□ -1.33
LRP6-203ENST00000538239 PHLDB1Q86UU1 1377 aa6.72□□□□□ -1.33
LRP6-203ENST00000538239 HMOX1P09601 288 aa6.72□□□□□ -1.33
LRP6-203ENST00000538239 ABTB2Q8N961 1025 aa6.72□□□□□ -1.33
LRP6-203ENST00000538239 NLRP6P59044 892 aa6.71□□□□□ -1.33
LRP6-203ENST00000538239 CFAP44Q96MT7 982 aa6.71□□□□□ -1.33
LRP6-203ENST00000538239 GGNBP2Q9H3C7 697 aa6.71□□□□□ -1.34
LRP6-203ENST00000538239 GPRASP1Q5JY77 1395 aa6.71□□□□□ -1.34
LRP6-203ENST00000538239 HECW1Q76N89 1606 aa6.71□□□□□ -1.34
LRP6-203ENST00000538239 NOL8Q76FK4 1167 aaKnown RBP6.71□□□□□ -1.34
LRP6-203ENST00000538239 THEMISQ8N1K5 641 aaPredicted RBP6.71□□□□□ -1.34
LRP6-203ENST00000538239 TCERG1O14776 1098 aaKnown RBP6.71□□□□□ -1.34
LRP6-203ENST00000538239 DNTTIP2Q5QJE6 756 aaKnown RBP6.71□□□□□ -1.34
LRP6-203ENST00000538239 TOP2BQ02880 1626 aa6.71□□□□□ -1.34
LRP6-203ENST00000538239 VPS53Q5VIR6 699 aa6.7□□□□□ -1.34
LRP6-203ENST00000538239 GOLGA6L6A8MZA4 724 aa6.7□□□□□ -1.34
LRP6-203ENST00000538239 RAD21O60216 631 aa6.7□□□□□ -1.34
LRP6-203ENST00000538239 MFAP1P55081 439 aaKnown RBP6.7□□□□□ -1.34
LRP6-203ENST00000538239 NEXNQ0ZGT2 675 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms