RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 PPP4R2Q9NY27 417 aa11.71□□□□□ -0.54
UBE3B-208ENST00000538070 ERICH6Q7L0X2 663 aa11.7□□□□□ -0.54
UBE3B-208ENST00000538070 PNISRQ8TF01 805 aaKnown RBP11.7□□□□□ -0.54
UBE3B-208ENST00000538070 DHX29Q7Z478 1369 aaKnown RBP11.69□□□□□ -0.54
UBE3B-208ENST00000538070 CHD1O14646 1710 aa11.69□□□□□ -0.54
UBE3B-208ENST00000538070 TMF1P82094 1093 aa11.69□□□□□ -0.54
UBE3B-208ENST00000538070 TRAPPC8Q9Y2L5 1435 aa11.69□□□□□ -0.54
UBE3B-208ENST00000538070 TNNT2P45379 298 aaPredicted RBP11.68□□□□□ -0.54
UBE3B-208ENST00000538070 SAMD9LQ8IVG5 1584 aa11.68□□□□□ -0.54
UBE3B-208ENST00000538070 FAM135AQ9P2D6 1515 aa11.68□□□□□ -0.54
UBE3B-208ENST00000538070 SCAPERQ9BY12 1400 aa11.67□□□□□ -0.54
UBE3B-208ENST00000538070 TTC37Q6PGP7 1564 aa11.67□□□□□ -0.54
UBE3B-208ENST00000538070 NUDCQ9Y266 331 aa11.67□□□□□ -0.54
UBE3B-208ENST00000538070 KNSTRNQ9Y448 316 aa11.67□□□□□ -0.54
UBE3B-208ENST00000538070 ADGBQ8N7X0 1667 aa11.67□□□□□ -0.54
UBE3B-208ENST00000538070 KTN1Q86UP2 1357 aaKnown RBP11.67□□□□□ -0.54
UBE3B-208ENST00000538070 MYBBP1AQ9BQG0 1328 aaKnown RBP11.66□□□□□ -0.54
UBE3B-208ENST00000538070 CDCA7LQ96GN5 454 aa11.66□□□□□ -0.54
UBE3B-208ENST00000538070 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.66□□□□□ -0.54
UBE3B-208ENST00000538070 SAFB2Q14151 953 aaKnown RBP eCLIP11.66□□□□□ -0.54
UBE3B-208ENST00000538070 CFAP70Q5T0N1 1121 aa11.65□□□□□ -0.54
UBE3B-208ENST00000538070 BCORL1Q5H9F3 1711 aa11.65□□□□□ -0.54
UBE3B-208ENST00000538070 DISP3Q9P2K9 1392 aa11.65□□□□□ -0.54
UBE3B-208ENST00000538070 PLIN1O60240 522 aa11.65□□□□□ -0.54
UBE3B-208ENST00000538070 RALBP1Q15311 655 aa11.65□□□□□ -0.54
UBE3B-208ENST00000538070 ARHGEF12Q9NZN5 1544 aa11.64□□□□□ -0.55
UBE3B-208ENST00000538070 NLRP13Q86W25 1043 aa11.64□□□□□ -0.55
UBE3B-208ENST00000538070 SHANK2Q9UPX8 1470 aa11.64□□□□□ -0.55
UBE3B-208ENST00000538070 ADCY10Q96PN6 1610 aa11.63□□□□□ -0.55
UBE3B-208ENST00000538070 RALGAPBQ86X10 1494 aa11.63□□□□□ -0.55
UBE3B-208ENST00000538070 WDR43Q15061 677 aaKnown RBP eCLIP11.62□□□□□ -0.55
UBE3B-208ENST00000538070 CCDC146Q8IYE0 955 aa11.62□□□□□ -0.55
UBE3B-208ENST00000538070 TRAK1Q9UPV9 953 aa11.62□□□□□ -0.55
UBE3B-208ENST00000538070 CDC42BPBQ9Y5S2 1711 aa11.62□□□□□ -0.55
UBE3B-208ENST00000538070 PLCH2O75038 1416 aa11.62□□□□□ -0.55
UBE3B-208ENST00000538070 NPM2Q86SE8 214 aaKnown RBP11.62□□□□□ -0.55
UBE3B-208ENST00000538070 PLA2R1Q13018 1463 aa11.62□□□□□ -0.55
UBE3B-208ENST00000538070 ABCC2Q92887 1545 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 PRAG1Q86YV5 1406 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 RAPGEF3O95398 923 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 TMEM132EQ6IEE7 984 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 TESK2Q96S53 571 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 KANK1Q14678 1352 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 CROCC2H7BZ55 1655 aa11.61□□□□□ -0.55
UBE3B-208ENST00000538070 NEUROD2Q15784 382 aa11.6□□□□□ -0.55
UBE3B-208ENST00000538070 A2MP01023 1474 aa11.6□□□□□ -0.55
UBE3B-208ENST00000538070 OSCARQ8IYS5 282 aa11.59□□□□□ -0.55
UBE3B-208ENST00000538070 EXOC6Q8TAG9 804 aa11.59□□□□□ -0.55
UBE3B-208ENST00000538070 ARID4BQ4LE39 1312 aaPredicted RBP11.59□□□□□ -0.55
UBE3B-208ENST00000538070 RCAN3Q9UKA8 241 aa11.59□□□□□ -0.55
UBE3B-208ENST00000538070 UHRF1BP1Q6BDS2 1440 aa11.58□□□□□ -0.55
UBE3B-208ENST00000538070 ADAMTS8Q9UP79 889 aa11.58□□□□□ -0.55
UBE3B-208ENST00000538070 KDM5CP41229 1560 aa11.58□□□□□ -0.56
UBE3B-208ENST00000538070 CYB5RLQ6IPT4 315 aa11.58□□□□□ -0.56
UBE3B-208ENST00000538070 STK26Q9P289 416 aa11.58□□□□□ -0.56
UBE3B-208ENST00000538070 ANP32EQ9BTT0 268 aa11.58□□□□□ -0.56
UBE3B-208ENST00000538070 ERBINQ96RT1 1412 aa11.58□□□□□ -0.56
UBE3B-208ENST00000538070 PREX2Q70Z35 1606 aa11.57□□□□□ -0.56
UBE3B-208ENST00000538070 ADGRF5Q8IZF2 1346 aa11.57□□□□□ -0.56
UBE3B-208ENST00000538070 WASHC2CQ9Y4E1 1318 aa11.57□□□□□ -0.56
UBE3B-208ENST00000538070 PER1O15534 1290 aaPredicted RBP11.57□□□□□ -0.56
UBE3B-208ENST00000538070 SKAP1Q86WV1 359 aa11.56□□□□□ -0.56
UBE3B-208ENST00000538070 ARHGEF5Q12774 1597 aa11.56□□□□□ -0.56
UBE3B-208ENST00000538070 PLPPR3Q6T4P5 718 aa11.56□□□□□ -0.56
UBE3B-208ENST00000538070 FANCAO15360 1455 aa11.56□□□□□ -0.56
UBE3B-208ENST00000538070 MLECQ14165 292 aa11.55□□□□□ -0.56
UBE3B-208ENST00000538070 BRD4O60885 1362 aaPredicted RBP11.55□□□□□ -0.56
UBE3B-208ENST00000538070 MSH5O43196 834 aa11.54□□□□□ -0.56
UBE3B-208ENST00000538070 ADGRL1O94910 1474 aa11.53□□□□□ -0.56
UBE3B-208ENST00000538070 DUOX2Q9NRD8 1548 aa11.53□□□□□ -0.56
UBE3B-208ENST00000538070 RRP1P56182 461 aaKnown RBP11.53□□□□□ -0.56
UBE3B-208ENST00000538070 CFAP65Q6ZU64 1925 aaKnown RBP11.53□□□□□ -0.56
UBE3B-208ENST00000538070 SMG6Q86US8 1419 aaKnown RBP11.53□□□□□ -0.56
UBE3B-208ENST00000538070 PPP2R1AP30153 589 aa11.53□□□□□ -0.56
UBE3B-208ENST00000538070 ZCCHC11Q5TAX3 1644 aaKnown RBP11.52□□□□□ -0.56
UBE3B-208ENST00000538070 CDCA8Q53HL2 280 aa11.52□□□□□ -0.56
UBE3B-208ENST00000538070 MYO5CQ9NQX4 1742 aa11.52□□□□□ -0.57
UBE3B-208ENST00000538070 ASXL2Q76L83 1435 aa11.52□□□□□ -0.57
UBE3B-208ENST00000538070 STAG3Q9UJ98 1225 aa11.52□□□□□ -0.57
UBE3B-208ENST00000538070 KDM5DQ9BY66 1539 aa11.52□□□□□ -0.57
UBE3B-208ENST00000538070 RRP7AQ9Y3A4 280 aaKnown RBP11.51□□□□□ -0.57
UBE3B-208ENST00000538070 NBR1Q14596 966 aa11.5□□□□□ -0.57
UBE3B-208ENST00000538070 ERICH6BQ5W0A0 696 aa11.5□□□□□ -0.57
UBE3B-208ENST00000538070 SLC12A5Q9H2X9 1139 aa11.5□□□□□ -0.57
UBE3B-208ENST00000538070 APAF1O14727 1248 aa11.5□□□□□ -0.57
UBE3B-208ENST00000538070 AEBP2Q6ZN18 517 aaPredicted RBP11.5□□□□□ -0.57
UBE3B-208ENST00000538070 UGGT1Q9NYU2 1555 aa11.5□□□□□ -0.57
UBE3B-208ENST00000538070 WDR7Q9Y4E6 1490 aa11.5□□□□□ -0.57
UBE3B-208ENST00000538070 CRBNQ96SW2 442 aa11.49□□□□□ -0.57
UBE3B-208ENST00000538070 PARD3Q8TEW0 1356 aa11.48□□□□□ -0.57
UBE3B-208ENST00000538070 C20orf194Q5TEA3 1177 aa11.48□□□□□ -0.57
UBE3B-208ENST00000538070 MORC1Q86VD1 984 aa11.48□□□□□ -0.57
UBE3B-208ENST00000538070 CANXP27824 592 aaKnown RBP11.47□□□□□ -0.57
UBE3B-208ENST00000538070 SLC24A1O60721 1099 aa11.47□□□□□ -0.57
UBE3B-208ENST00000538070 MYT1Q01538 1121 aa11.46□□□□□ -0.57
UBE3B-208ENST00000538070 CD109Q6YHK3 1445 aa11.46□□□□□ -0.57
UBE3B-208ENST00000538070 AMER1Q5JTC6 1135 aaPredicted RBP11.46□□□□□ -0.57
UBE3B-208ENST00000538070 ABCC1P33527 1531 aa11.46□□□□□ -0.58
UBE3B-208ENST00000538070 CABP2Q9NPB3 220 aa11.46□□□□□ -0.58
UBE3B-208ENST00000538070 MAST1Q9Y2H9 1570 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms