RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 PHF14O94880 888 aa8.64□□□□□ -1.03
SKA3-207ENST00000536239 TYW1BQ6NUM6 668 aa8.64□□□□□ -1.03
SKA3-207ENST00000536239 ITGBL1O95965 494 aaPredicted RBP8.63□□□□□ -1.03
SKA3-207ENST00000536239 LAPTM4BQ86VI4 370 aa8.63□□□□□ -1.03
SKA3-207ENST00000536239 BCAMP50895 628 aa8.62□□□□□ -1.03
SKA3-207ENST00000536239 SOWAHBA6NEL2 793 aa8.61□□□□□ -1.03
SKA3-207ENST00000536239 ONECUT3O60422 494 aaPredicted RBP8.61□□□□□ -1.03
SKA3-207ENST00000536239 KIAA1468Q9P260 1216 aa8.61□□□□□ -1.03
SKA3-207ENST00000536239 CADPS2Q86UW7 1296 aa8.6□□□□□ -1.03
SKA3-207ENST00000536239 ZFRQ96KR1 1074 aaKnown RBP8.6□□□□□ -1.03
SKA3-207ENST00000536239 NYAP1Q6ZVC0 841 aa8.59□□□□□ -1.03
SKA3-207ENST00000536239 EPAS1Q99814 870 aa8.59□□□□□ -1.03
SKA3-207ENST00000536239 C6orf132Q5T0Z8 1188 aa8.58□□□□□ -1.04
SKA3-207ENST00000536239 WBP1LQ9NX94 342 aa8.57□□□□□ -1.04
SKA3-207ENST00000536239 CAMK2BQ13554 666 aa8.56□□□□□ -1.04
SKA3-207ENST00000536239 TRIM6-TRIM34B2RNG4 842 aa8.55□□□□□ -1.04
SKA3-207ENST00000536239 SEPT9Q9UHD8 586 aaPredicted RBP8.55□□□□□ -1.04
SKA3-207ENST00000536239 KCNC4Q03721 635 aa8.54□□□□□ -1.04
SKA3-207ENST00000536239 DPYSL4O14531 572 aa8.53□□□□□ -1.04
SKA3-207ENST00000536239 DCAF8L2P0C7V8 631 aa8.53□□□□□ -1.04
SKA3-207ENST00000536239 FAM98CQ17RN3 349 aaKnown RBP8.53□□□□□ -1.04
SKA3-207ENST00000536239 RBM33Q96EV2 1170 aaKnown RBP8.52□□□□□ -1.05
SKA3-207ENST00000536239 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.51□□□□□ -1.05
SKA3-207ENST00000536239 TSR3Q9UJK0 312 aaKnown RBP8.51□□□□□ -1.05
SKA3-207ENST00000536239 DDX12PQ92771 950 aa8.5□□□□□ -1.05
SKA3-207ENST00000536239 HPS5Q9UPZ3 1129 aa8.5□□□□□ -1.05
SKA3-207ENST00000536239 Q6ZNB5 142 aa8.49□□□□□ -1.05
SKA3-207ENST00000536239 LRCH3Q96II8 777 aa8.49□□□□□ -1.05
SKA3-207ENST00000536239 TSKSQ9UJT2 592 aa8.47□□□□□ -1.05
SKA3-207ENST00000536239 PACS2Q86VP3 889 aa8.46□□□□□ -1.06
SKA3-207ENST00000536239 EN1Q05925 392 aaPredicted RBP8.45□□□□□ -1.06
SKA3-207ENST00000536239 MAP3K7O43318 606 aa8.44□□□□□ -1.06
SKA3-207ENST00000536239 NBR1Q14596 966 aa8.44□□□□□ -1.06
SKA3-207ENST00000536239 TSR1Q2NL82 804 aaKnown RBP8.44□□□□□ -1.06
SKA3-207ENST00000536239 PPP4CP60510 307 aa8.43□□□□□ -1.06
SKA3-207ENST00000536239 LAPTM4AQ15012 233 aa8.42□□□□□ -1.06
SKA3-207ENST00000536239 PDIA6Q15084 440 aa8.42□□□□□ -1.06
SKA3-207ENST00000536239 SPDYE16A6NNV3 312 aaPredicted RBP8.4□□□□□ -1.06
SKA3-207ENST00000536239 TJAP1Q5JTD0 557 aa8.4□□□□□ -1.06
SKA3-207ENST00000536239 CDCA7LQ96GN5 454 aa8.4□□□□□ -1.06
SKA3-207ENST00000536239 SMAPO00193 183 aa8.39□□□□□ -1.07
SKA3-207ENST00000536239 PRSS12P56730 875 aa8.39□□□□□ -1.07
SKA3-207ENST00000536239 SAMD7Q7Z3H4 446 aa8.39□□□□□ -1.07
SKA3-207ENST00000536239 GFRA3O60609 400 aa8.38□□□□□ -1.07
SKA3-207ENST00000536239 FAM198AQ9UFP1 575 aa8.38□□□□□ -1.07
SKA3-207ENST00000536239 CERKQ8TCT0 537 aa8.37□□□□□ -1.07
SKA3-207ENST00000536239 LCE2BO14633 110 aa8.36□□□□□ -1.07
SKA3-207ENST00000536239 TRAF7Q6Q0C0 670 aa8.36□□□□□ -1.07
SKA3-207ENST00000536239 BBXQ8WY36 941 aaPredicted RBP8.36□□□□□ -1.07
SKA3-207ENST00000536239 TATDN2Q93075 761 aa8.36□□□□□ -1.07
SKA3-207ENST00000536239 C3orf80F5H4A9 247 aa8.35□□□□□ -1.07
SKA3-207ENST00000536239 PRIM1P49642 420 aaKnown RBP8.35□□□□□ -1.07
SKA3-207ENST00000536239 MTRQ99707 1265 aa8.35□□□□□ -1.07
SKA3-207ENST00000536239 PRKD2Q9BZL6 878 aa8.35□□□□□ -1.07
SKA3-207ENST00000536239 IL21Q9HBE4 155 aa8.35□□□□□ -1.07
SKA3-207ENST00000536239 NBPF26B4DH59 902 aa8.34□□□□□ -1.07
SKA3-207ENST00000536239 PPP1R18Q6NYC8 613 aa8.34□□□□□ -1.07
SKA3-207ENST00000536239 PNMA3Q9UL41 463 aa8.34□□□□□ -1.07
SKA3-207ENST00000536239 GRXCR2A6NFK2 248 aa8.33□□□□□ -1.08
SKA3-207ENST00000536239 E2F4Q16254 413 aa8.32□□□□□ -1.08
SKA3-207ENST00000536239 ZNF516Q92618 1163 aa8.32□□□□□ -1.08
SKA3-207ENST00000536239 V9GY48 417 aaPredicted RBP8.32□□□□□ -1.08
SKA3-207ENST00000536239 NRG2O14511 850 aaPredicted RBP8.31□□□□□ -1.08
SKA3-207ENST00000536239 HDGFP51858 240 aaKnown RBP8.31□□□□□ -1.08
SKA3-207ENST00000536239 ARIH1Q9Y4X5 557 aaPredicted RBP8.31□□□□□ -1.08
SKA3-207ENST00000536239 NUDT18Q6ZVK8 323 aa8.3□□□□□ -1.08
SKA3-207ENST00000536239 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.3□□□□□ -1.08
SKA3-207ENST00000536239 OSBPP22059 807 aa8.29□□□□□ -1.08
SKA3-207ENST00000536239 APLP1P51693 650 aa8.29□□□□□ -1.08
SKA3-207ENST00000536239 RBM27Q9P2N5 1060 aaKnown RBP8.29□□□□□ -1.08
SKA3-207ENST00000536239 RNF40O75150 1001 aa8.28□□□□□ -1.08
SKA3-207ENST00000536239 SPRYD3Q8NCJ5 442 aa8.28□□□□□ -1.08
SKA3-207ENST00000536239 CDHR5Q9HBB8 845 aa8.28□□□□□ -1.08
SKA3-207ENST00000536239 NKX2-3Q8TAU0 364 aa8.26□□□□□ -1.09
SKA3-207ENST00000536239 WDR70Q9NW82 654 aa8.26□□□□□ -1.09
SKA3-207ENST00000536239 TTC13Q8NBP0 860 aa8.25□□□□□ -1.09
SKA3-207ENST00000536239 NECTIN2Q92692 538 aa8.25□□□□□ -1.09
SKA3-207ENST00000536239 SWT1Q5T5J6 900 aaKnown RBP8.24□□□□□ -1.09
SKA3-207ENST00000536239 NPDC1Q9NQX5 325 aaPredicted RBP8.23□□□□□ -1.09
SKA3-207ENST00000536239 PDZRN3Q9UPQ7 1066 aa8.23□□□□□ -1.09
SKA3-207ENST00000536239 GGCXP38435 758 aa8.22□□□□□ -1.09
SKA3-207ENST00000536239 COPS2P61201 443 aa8.22□□□□□ -1.09
SKA3-207ENST00000536239 PADI6Q6TGC4 694 aa8.22□□□□□ -1.09
SKA3-207ENST00000536239 SLF2Q8IX21 1173 aa8.22□□□□□ -1.09
SKA3-207ENST00000536239 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.22□□□□□ -1.09
SKA3-207ENST00000536239 TMUB1Q9BVT8 246 aa8.21□□□□□ -1.1
SKA3-207ENST00000536239 ZPR1O75312 459 aa8.19□□□□□ -1.1
SKA3-207ENST00000536239 ZNF787Q6DD87 383 aa8.19□□□□□ -1.1
SKA3-207ENST00000536239 SLC4A3P48751 1232 aa8.18□□□□□ -1.1
SKA3-207ENST00000536239 EYA1Q99502 592 aa8.18□□□□□ -1.1
SKA3-207ENST00000536239 CFAP44Q96MT7 982 aa8.16□□□□□ -1.1
SKA3-207ENST00000536239 PRR14Q9BWN1 585 aa8.16□□□□□ -1.1
SKA3-207ENST00000536239 PAXIP1Q6ZW49 1069 aaPredicted RBP8.15□□□□□ -1.1
SKA3-207ENST00000536239 PCDHB3Q9Y5E6 796 aa8.15□□□□□ -1.1
SKA3-207ENST00000536239 RNF223E7ERA6 249 aa8.13□□□□□ -1.11
SKA3-207ENST00000536239 SLC19A1P41440 591 aa8.13□□□□□ -1.11
SKA3-207ENST00000536239 BLOC1S3Q6QNY0 202 aa8.13□□□□□ -1.11
SKA3-207ENST00000536239 TRIM67Q6ZTA4 783 aa8.13□□□□□ -1.11
SKA3-207ENST00000536239 EMID1Q96A84 441 aaPredicted RBP8.12□□□□□ -1.11
SKA3-207ENST00000536239 ZNF775Q96BV0 537 aaPredicted RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms