RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-205ENST00000536107 DNAJC5Q9H3Z4 198 aa9.87□□□□□ -0.83
YBX3-205ENST00000536107 COL9A1P20849 921 aa9.86□□□□□ -0.83
YBX3-205ENST00000536107 TRAF7Q6Q0C0 670 aa9.86□□□□□ -0.83
YBX3-205ENST00000536107 WBP1LQ9NX94 342 aa9.86□□□□□ -0.83
YBX3-205ENST00000536107 PCDHGA10Q9Y5H3 936 aa9.86□□□□□ -0.83
YBX3-205ENST00000536107 ONECUT3O60422 494 aaPredicted RBP9.85□□□□□ -0.83
YBX3-205ENST00000536107 MAP3K9P80192 1104 aa9.84□□□□□ -0.83
YBX3-205ENST00000536107 NKX1-1Q15270 411 aaPredicted RBP9.83□□□□□ -0.84
YBX3-205ENST00000536107 FBXW7Q969H0 707 aa9.83□□□□□ -0.84
YBX3-205ENST00000536107 KIAA1468Q9P260 1216 aa9.83□□□□□ -0.84
YBX3-205ENST00000536107 GFRA3O60609 400 aa9.82□□□□□ -0.84
YBX3-205ENST00000536107 CHGAP10645 457 aaKnown RBP9.82□□□□□ -0.84
YBX3-205ENST00000536107 TYW1BQ6NUM6 668 aa9.81□□□□□ -0.84
YBX3-205ENST00000536107 PHF14O94880 888 aa9.8□□□□□ -0.84
YBX3-205ENST00000536107 DDX27Q96GQ7 796 aaKnown RBP9.79□□□□□ -0.84
YBX3-205ENST00000536107 LARP6Q9BRS8 491 aaKnown RBP9.78□□□□□ -0.84
YBX3-205ENST00000536107 TSR3Q9UJK0 312 aaKnown RBP9.78□□□□□ -0.84
YBX3-205ENST00000536107 MFSD10Q14728 455 aa9.77□□□□□ -0.85
YBX3-205ENST00000536107 FAM98CQ17RN3 349 aaKnown RBP9.77□□□□□ -0.85
YBX3-205ENST00000536107 SEPT9Q9UHD8 586 aaPredicted RBP9.77□□□□□ -0.85
YBX3-205ENST00000536107 EMILIN3Q9NT22 766 aa9.76□□□□□ -0.85
YBX3-205ENST00000536107 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.76□□□□□ -0.85
YBX3-205ENST00000536107 NRG2O14511 850 aaPredicted RBP9.75□□□□□ -0.85
YBX3-205ENST00000536107 HPS5Q9UPZ3 1129 aa9.75□□□□□ -0.85
YBX3-205ENST00000536107 TRIM6-TRIM34B2RNG4 842 aa9.74□□□□□ -0.85
YBX3-205ENST00000536107 LRCH3Q96II8 777 aa9.74□□□□□ -0.85
YBX3-205ENST00000536107 C6orf132Q5T0Z8 1188 aa9.73□□□□□ -0.85
YBX3-205ENST00000536107 EPAS1Q99814 870 aa9.72□□□□□ -0.85
YBX3-205ENST00000536107 PRKD2Q9BZL6 878 aa9.71□□□□□ -0.86
YBX3-205ENST00000536107 V9GY48 417 aaPredicted RBP9.7□□□□□ -0.86
YBX3-205ENST00000536107 TJAP1Q5JTD0 557 aa9.68□□□□□ -0.86
YBX3-205ENST00000536107 PPP4CP60510 307 aa9.66□□□□□ -0.86
YBX3-205ENST00000536107 ZNF787Q6DD87 383 aa9.66□□□□□ -0.86
YBX3-205ENST00000536107 GTPBP6O43824 516 aaPredicted RBP9.64□□□□□ -0.87
YBX3-205ENST00000536107 PPP1R18Q6NYC8 613 aa9.64□□□□□ -0.87
YBX3-205ENST00000536107 PACS2Q86VP3 889 aa9.63□□□□□ -0.87
YBX3-205ENST00000536107 IL21Q9HBE4 155 aa9.62□□□□□ -0.87
YBX3-205ENST00000536107 ZNF775Q96BV0 537 aaPredicted RBP9.61□□□□□ -0.87
YBX3-205ENST00000536107 TSKSQ9UJT2 592 aa9.61□□□□□ -0.87
YBX3-205ENST00000536107 RBM33Q96EV2 1170 aaKnown RBP9.6□□□□□ -0.87
YBX3-205ENST00000536107 MTRQ99707 1265 aa9.6□□□□□ -0.87
YBX3-205ENST00000536107 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.6□□□□□ -0.87
YBX3-205ENST00000536107 PDZRN3Q9UPQ7 1066 aa9.59□□□□□ -0.87
YBX3-205ENST00000536107 CAMK2BQ13554 666 aa9.58□□□□□ -0.88
YBX3-205ENST00000536107 SAMD7Q7Z3H4 446 aa9.57□□□□□ -0.88
YBX3-205ENST00000536107 DPYSL4O14531 572 aa9.55□□□□□ -0.88
YBX3-205ENST00000536107 EN1Q05925 392 aaPredicted RBP9.54□□□□□ -0.88
YBX3-205ENST00000536107 ZNF516Q92618 1163 aa9.54□□□□□ -0.88
YBX3-205ENST00000536107 DDX12PQ92771 950 aa9.54□□□□□ -0.88
YBX3-205ENST00000536107 TSR1Q2NL82 804 aaKnown RBP9.52□□□□□ -0.89
YBX3-205ENST00000536107 MAP3K7O43318 606 aa9.51□□□□□ -0.89
YBX3-205ENST00000536107 CADPS2Q86UW7 1296 aa9.51□□□□□ -0.89
YBX3-205ENST00000536107 SMAPO00193 183 aa9.5□□□□□ -0.89
YBX3-205ENST00000536107 GGCXP38435 758 aa9.5□□□□□ -0.89
YBX3-205ENST00000536107 CDCA7LQ96GN5 454 aa9.5□□□□□ -0.89
YBX3-205ENST00000536107 PRSS12P56730 875 aa9.49□□□□□ -0.89
YBX3-205ENST00000536107 NBR1Q14596 966 aa9.49□□□□□ -0.89
YBX3-205ENST00000536107 APLP1P51693 650 aa9.48□□□□□ -0.89
YBX3-205ENST00000536107 TMUB1Q9BVT8 246 aa9.48□□□□□ -0.89
YBX3-205ENST00000536107 FAM198AQ9UFP1 575 aa9.48□□□□□ -0.89
YBX3-205ENST00000536107 NKX2-3Q8TAU0 364 aa9.47□□□□□ -0.89
YBX3-205ENST00000536107 CERKQ8TCT0 537 aa9.47□□□□□ -0.89
YBX3-205ENST00000536107 TATDN2Q93075 761 aa9.47□□□□□ -0.89
YBX3-205ENST00000536107 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
YBX3-205ENST00000536107 NECTIN2Q92692 538 aa9.45□□□□□ -0.9
YBX3-205ENST00000536107 PNMA3Q9UL41 463 aa9.45□□□□□ -0.9
YBX3-205ENST00000536107 C3orf80F5H4A9 247 aa9.44□□□□□ -0.9
YBX3-205ENST00000536107 HDGFP51858 240 aaKnown RBP9.44□□□□□ -0.9
YBX3-205ENST00000536107 TRIM67Q6ZTA4 783 aa9.44□□□□□ -0.9
YBX3-205ENST00000536107 MYT1Q01538 1121 aa9.42□□□□□ -0.9
YBX3-205ENST00000536107 PDIA6Q15084 440 aa9.42□□□□□ -0.9
YBX3-205ENST00000536107 RNF40O75150 1001 aa9.41□□□□□ -0.9
YBX3-205ENST00000536107 DGAT1O75907 488 aa9.41□□□□□ -0.9
YBX3-205ENST00000536107 PKDCCQ504Y2 493 aa9.41□□□□□ -0.9
YBX3-205ENST00000536107 SPDYE16A6NNV3 312 aaPredicted RBP9.4□□□□□ -0.9
YBX3-205ENST00000536107 COPS2P61201 443 aa9.39□□□□□ -0.91
YBX3-205ENST00000536107 NUDT18Q6ZVK8 323 aa9.39□□□□□ -0.91
YBX3-205ENST00000536107 RBM27Q9P2N5 1060 aaKnown RBP9.39□□□□□ -0.91
YBX3-205ENST00000536107 ZPR1O75312 459 aa9.38□□□□□ -0.91
YBX3-205ENST00000536107 SLC19A1P41440 591 aa9.38□□□□□ -0.91
YBX3-205ENST00000536107 POTECB2RU33 542 aa9.37□□□□□ -0.91
YBX3-205ENST00000536107 PRR20EP86478 221 aa9.37□□□□□ -0.91
YBX3-205ENST00000536107 PRR20CP86479 221 aa9.37□□□□□ -0.91
YBX3-205ENST00000536107 PRR20DP86480 221 aa9.37□□□□□ -0.91
YBX3-205ENST00000536107 PRR20BP86481 221 aa9.37□□□□□ -0.91
YBX3-205ENST00000536107 PRR20AP86496 221 aa9.37□□□□□ -0.91
YBX3-205ENST00000536107 RNF223E7ERA6 249 aa9.35□□□□□ -0.91
YBX3-205ENST00000536107 PRIM1P49642 420 aaKnown RBP9.35□□□□□ -0.91
YBX3-205ENST00000536107 SPRYD7Q5W111 196 aa9.35□□□□□ -0.91
YBX3-205ENST00000536107 ZNF598Q86UK7 904 aaKnown RBP9.35□□□□□ -0.91
YBX3-205ENST00000536107 SLF2Q8IX21 1173 aa9.35□□□□□ -0.91
YBX3-205ENST00000536107 EMID1Q96A84 441 aaPredicted RBP9.35□□□□□ -0.91
YBX3-205ENST00000536107 SWT1Q5T5J6 900 aaKnown RBP9.34□□□□□ -0.91
YBX3-205ENST00000536107 LCE2AQ5TA79 106 aaPredicted RBP9.34□□□□□ -0.91
YBX3-205ENST00000536107 TREML4Q6UXN2 200 aa9.34□□□□□ -0.91
YBX3-205ENST00000536107 PRR14Q9BWN1 585 aa9.32□□□□□ -0.92
YBX3-205ENST00000536107 SLC4A3P48751 1232 aa9.3□□□□□ -0.92
YBX3-205ENST00000536107 ANKLE1Q8NAG6 615 aa9.3□□□□□ -0.92
YBX3-205ENST00000536107 TTC13Q8NBP0 860 aa9.3□□□□□ -0.92
YBX3-205ENST00000536107 CDHR5Q9HBB8 845 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms