RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 C6orf132Q5T0Z8 1188 aa7.25□□□□□ -1.25
CSMD3-210ENST00000534172 RBM33Q96EV2 1170 aaKnown RBP7.25□□□□□ -1.25
CSMD3-210ENST00000534172 BCL2L12Q9HB09 334 aa7.25□□□□□ -1.25
CSMD3-210ENST00000534172 GPR37O15354 613 aa7.24□□□□□ -1.25
CSMD3-210ENST00000534172 PTPREP23469 700 aa7.24□□□□□ -1.25
CSMD3-210ENST00000534172 ERBB3P21860 1342 aa7.23□□□□□ -1.25
CSMD3-210ENST00000534172 ONECUT3O60422 494 aaPredicted RBP7.22□□□□□ -1.25
CSMD3-210ENST00000534172 PBX2P40425 430 aa7.22□□□□□ -1.25
CSMD3-210ENST00000534172 SLC24A3Q9HC58 644 aa7.22□□□□□ -1.25
CSMD3-210ENST00000534172 PRIM1P49642 420 aaKnown RBP7.21□□□□□ -1.25
CSMD3-210ENST00000534172 ADAM33Q9BZ11 813 aa7.21□□□□□ -1.25
CSMD3-210ENST00000534172 PPP1R3GB7ZBB8 358 aa7.21□□□□□ -1.26
CSMD3-210ENST00000534172 IRF6O14896 467 aa7.2□□□□□ -1.26
CSMD3-210ENST00000534172 ST18O60284 1047 aa7.2□□□□□ -1.26
CSMD3-210ENST00000534172 EMP3P54852 163 aa7.2□□□□□ -1.26
CSMD3-210ENST00000534172 OATP04181 439 aa7.2□□□□□ -1.26
CSMD3-210ENST00000534172 NPDC1Q9NQX5 325 aaPredicted RBP7.2□□□□□ -1.26
CSMD3-210ENST00000534172 TSR1Q2NL82 804 aaKnown RBP7.19□□□□□ -1.26
CSMD3-210ENST00000534172 PRSS12P56730 875 aa7.19□□□□□ -1.26
CSMD3-210ENST00000534172 FAM163AQ96GL9 167 aaPredicted RBP7.18□□□□□ -1.26
CSMD3-210ENST00000534172 CDHR5Q9HBB8 845 aa7.18□□□□□ -1.26
CSMD3-210ENST00000534172 SLC4A5Q9BY07 1137 aa7.17□□□□□ -1.26
CSMD3-210ENST00000534172 ARHGAP33O14559 1287 aa7.17□□□□□ -1.26
CSMD3-210ENST00000534172 TTC13Q8NBP0 860 aa7.17□□□□□ -1.26
CSMD3-210ENST00000534172 TRIM66O15016 1216 aa7.16□□□□□ -1.26
CSMD3-210ENST00000534172 PACS2Q86VP3 889 aa7.16□□□□□ -1.26
CSMD3-210ENST00000534172 ZNF687Q8N1G0 1237 aa7.16□□□□□ -1.26
CSMD3-210ENST00000534172 CCDC102AQ96A19 550 aa7.16□□□□□ -1.26
CSMD3-210ENST00000534172 VARS2Q5ST30 1063 aaKnown RBP7.16□□□□□ -1.26
CSMD3-210ENST00000534172 RBM46Q8TBY0 533 aaKnown RBP7.16□□□□□ -1.26
CSMD3-210ENST00000534172 CDCA7LQ96GN5 454 aa7.16□□□□□ -1.26
CSMD3-210ENST00000534172 AMHR2Q16671 573 aa7.15□□□□□ -1.26
CSMD3-210ENST00000534172 PLSCR2Q9NRY7 297 aa7.15□□□□□ -1.27
CSMD3-210ENST00000534172 NBPF26B4DH59 902 aa7.14□□□□□ -1.27
CSMD3-210ENST00000534172 NEUROD2Q15784 382 aa7.13□□□□□ -1.27
CSMD3-210ENST00000534172 PADI6Q6TGC4 694 aa7.13□□□□□ -1.27
CSMD3-210ENST00000534172 KCNK17Q96T54 332 aa7.13□□□□□ -1.27
CSMD3-210ENST00000534172 TRIM6-TRIM34B2RNG4 842 aa7.13□□□□□ -1.27
CSMD3-210ENST00000534172 PDE4DQ08499 809 aa7.13□□□□□ -1.27
CSMD3-210ENST00000534172 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.12□□□□□ -1.27
CSMD3-210ENST00000534172 CLCN1P35523 988 aa7.12□□□□□ -1.27
CSMD3-210ENST00000534172 ADGRG1Q9Y653 693 aa7.12□□□□□ -1.27
CSMD3-210ENST00000534172 FAM205CA6NFA0 338 aa7.11□□□□□ -1.27
CSMD3-210ENST00000534172 COL9A1P20849 921 aa7.11□□□□□ -1.27
CSMD3-210ENST00000534172 FECHP22830 423 aa7.11□□□□□ -1.27
CSMD3-210ENST00000534172 BRPF1P55201 1214 aaPredicted RBP7.11□□□□□ -1.27
CSMD3-210ENST00000534172 TMEM132AQ24JP5 1023 aa7.11□□□□□ -1.27
CSMD3-210ENST00000534172 TK2O00142 265 aa7.1□□□□□ -1.27
CSMD3-210ENST00000534172 HS3ST6Q96QI5 342 aa7.1□□□□□ -1.27
CSMD3-210ENST00000534172 ZBED2Q9BTP6 218 aa7.1□□□□□ -1.27
CSMD3-210ENST00000534172 MARVELD3Q96A59 401 aa7.09□□□□□ -1.27
CSMD3-210ENST00000534172 METTL3Q86U44 580 aaKnown RBP7.09□□□□□ -1.27
CSMD3-210ENST00000534172 PXYLP1Q8TE99 480 aa7.09□□□□□ -1.27
CSMD3-210ENST00000534172 RABGEF1Q9UJ41 708 aa7.09□□□□□ -1.27
CSMD3-210ENST00000534172 SLC4A3P48751 1232 aa7.08□□□□□ -1.28
CSMD3-210ENST00000534172 TTLL12Q14166 644 aaPredicted RBP7.08□□□□□ -1.28
CSMD3-210ENST00000534172 LAPTM4BQ86VI4 370 aa7.08□□□□□ -1.28
CSMD3-210ENST00000534172 TATDN2Q93075 761 aa7.08□□□□□ -1.28
CSMD3-210ENST00000534172 GPCPD1Q9NPB8 672 aa7.08□□□□□ -1.28
CSMD3-210ENST00000534172 HDGFP51858 240 aaKnown RBP7.07□□□□□ -1.28
CSMD3-210ENST00000534172 RSPH4AQ5TD94 716 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 DDRGK1Q96HY6 314 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 PNMA3Q9UL41 463 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 DNAJB2P25686 324 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 NBPF3Q9H094 633 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 KDM4CQ9H3R0 1056 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 TSKSQ9UJT2 592 aa7.07□□□□□ -1.28
CSMD3-210ENST00000534172 EYA1Q99502 592 aa7.06□□□□□ -1.28
CSMD3-210ENST00000534172 PSEN2P49810 448 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 NUDT18Q6ZVK8 323 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 SULF1Q8IWU6 871 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 NECTIN2Q92692 538 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 STAC3Q96MF2 364 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 KIAA1468Q9P260 1216 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 VPS9D1Q9Y2B5 631 aa7.05□□□□□ -1.28
CSMD3-210ENST00000534172 TMUB1Q9BVT8 246 aa7.04□□□□□ -1.28
CSMD3-210ENST00000534172 PARP9Q8IXQ6 854 aa7.04□□□□□ -1.28
CSMD3-210ENST00000534172 RCCD1A6NED2 376 aa7.03□□□□□ -1.28
CSMD3-210ENST00000534172 DIXDC1Q155Q3 683 aa7.03□□□□□ -1.28
CSMD3-210ENST00000534172 FAM198AQ9UFP1 575 aa7.03□□□□□ -1.28
CSMD3-210ENST00000534172 LSM11P83369 360 aaKnown RBP eCLIP7.03□□□□□ -1.28
CSMD3-210ENST00000534172 MDM2Q00987 491 aaPredicted RBP7.03□□□□□ -1.28
CSMD3-210ENST00000534172 PROX2Q3B8N5 592 aa7.03□□□□□ -1.28
CSMD3-210ENST00000534172 DMRTA1Q5VZB9 504 aa7.03□□□□□ -1.28
CSMD3-210ENST00000534172 FAM98CQ17RN3 349 aaKnown RBP7.02□□□□□ -1.29
CSMD3-210ENST00000534172 GIGYF2Q6Y7W6 1299 aaKnown RBP7.02□□□□□ -1.29
CSMD3-210ENST00000534172 LCE2DQ5TA82 110 aaPredicted RBP7.02□□□□□ -1.29
CSMD3-210ENST00000534172 POTEEQ6S8J3 1075 aa7.01□□□□□ -1.29
CSMD3-210ENST00000534172 RSPH6AQ9H0K4 717 aa7.01□□□□□ -1.29
CSMD3-210ENST00000534172 TMEM134Q9H6X4 195 aa7.01□□□□□ -1.29
CSMD3-210ENST00000534172 SSTR3P32745 418 aaPredicted RBP7.01□□□□□ -1.29
CSMD3-210ENST00000534172 AXIN2Q9Y2T1 843 aa7.01□□□□□ -1.29
CSMD3-210ENST00000534172 ADGRD1Q6QNK2 874 aa7□□□□□ -1.29
CSMD3-210ENST00000534172 MRPL50Q8N5N7 158 aaKnown RBP7□□□□□ -1.29
CSMD3-210ENST00000534172 GPBP1L1Q9HC44 474 aaPredicted RBP7□□□□□ -1.29
CSMD3-210ENST00000534172 FAM217BQ9NTX9 383 aaPredicted RBP7□□□□□ -1.29
CSMD3-210ENST00000534172 SLF2Q8IX21 1173 aa7□□□□□ -1.29
CSMD3-210ENST00000534172 GOPCQ9HD26 462 aa7□□□□□ -1.29
CSMD3-210ENST00000534172 POTEB3A0JP26 581 aa6.99□□□□□ -1.29
CSMD3-210ENST00000534172 FAM161AQ3B820 660 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms