RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NPDC1Q9NQX5 325 aaPredicted RBP9.32□□□□□ -0.92
CD44-236ENST00000533222 POTEB3A0JP26 581 aa9.31□□□□□ -0.92
CD44-236ENST00000533222 PTGDRQ13258 359 aa9.31□□□□□ -0.92
CD44-236ENST00000533222 PPP4R3BQ5MIZ7 849 aa9.31□□□□□ -0.92
CD44-236ENST00000533222 VARS2Q5ST30 1063 aaKnown RBP9.31□□□□□ -0.92
CD44-236ENST00000533222 POTEBQ6S5H4 581 aa9.31□□□□□ -0.92
CD44-236ENST00000533222 ERBB3P21860 1342 aa9.31□□□□□ -0.92
CD44-236ENST00000533222 C6orf132Q5T0Z8 1188 aa9.3□□□□□ -0.92
CD44-236ENST00000533222 BARGINQ6ZT62 677 aa9.3□□□□□ -0.92
CD44-236ENST00000533222 SLC24A3Q9HC58 644 aa9.3□□□□□ -0.92
CD44-236ENST00000533222 FAM205CA6NFA0 338 aa9.29□□□□□ -0.92
CD44-236ENST00000533222 COL9A1P20849 921 aa9.29□□□□□ -0.92
CD44-236ENST00000533222 FCHSD2O94868 740 aa9.28□□□□□ -0.92
CD44-236ENST00000533222 POTEEQ6S8J3 1075 aa9.28□□□□□ -0.92
CD44-236ENST00000533222 PSDA5PKW4 1024 aaPredicted RBP9.27□□□□□ -0.93
CD44-236ENST00000533222 BCL2L12Q9HB09 334 aa9.27□□□□□ -0.93
CD44-236ENST00000533222 GNPATO15228 680 aa9.26□□□□□ -0.93
CD44-236ENST00000533222 PSEN2P49810 448 aa9.25□□□□□ -0.93
CD44-236ENST00000533222 HIC1Q14526 733 aa9.25□□□□□ -0.93
CD44-236ENST00000533222 HS3ST6Q96QI5 342 aa9.25□□□□□ -0.93
CD44-236ENST00000533222 KCNK17Q96T54 332 aa9.25□□□□□ -0.93
CD44-236ENST00000533222 AXIN2Q9Y2T1 843 aa9.25□□□□□ -0.93
CD44-236ENST00000533222 PTPREP23469 700 aa9.23□□□□□ -0.93
CD44-236ENST00000533222 FAM161AQ3B820 660 aa9.23□□□□□ -0.93
CD44-236ENST00000533222 PADI6Q6TGC4 694 aa9.23□□□□□ -0.93
CD44-236ENST00000533222 FAM198AQ9UFP1 575 aa9.23□□□□□ -0.93
CD44-236ENST00000533222 KRI1Q8N9T8 703 aaKnown RBP9.22□□□□□ -0.93
CD44-236ENST00000533222 PPP1R3GB7ZBB8 358 aa9.21□□□□□ -0.94
CD44-236ENST00000533222 MAP2K5Q13163 448 aa9.21□□□□□ -0.94
CD44-236ENST00000533222 CCDC102AQ96A19 550 aa9.21□□□□□ -0.94
CD44-236ENST00000533222 PROX2Q3B8N5 592 aa9.2□□□□□ -0.94
CD44-236ENST00000533222 DMRTA1Q5VZB9 504 aa9.2□□□□□ -0.94
CD44-236ENST00000533222 C3orf80F5H4A9 247 aa9.19□□□□□ -0.94
CD44-236ENST00000533222 CDCA7LQ96GN5 454 aa9.19□□□□□ -0.94
CD44-236ENST00000533222 TSKSQ9UJT2 592 aa9.19□□□□□ -0.94
CD44-236ENST00000533222 IRF6O14896 467 aa9.18□□□□□ -0.94
CD44-236ENST00000533222 PRSS12P56730 875 aa9.18□□□□□ -0.94
CD44-236ENST00000533222 ZNF687Q8N1G0 1237 aa9.18□□□□□ -0.94
CD44-236ENST00000533222 TTC13Q8NBP0 860 aa9.18□□□□□ -0.94
CD44-236ENST00000533222 MINK1Q8N4C8 1332 aaPredicted RBP9.17□□□□□ -0.94
CD44-236ENST00000533222 CERKQ8TCT0 537 aa9.17□□□□□ -0.94
CD44-236ENST00000533222 ARHGAP33O14559 1287 aa9.16□□□□□ -0.94
CD44-236ENST00000533222 TRIM66O15016 1216 aa9.16□□□□□ -0.94
CD44-236ENST00000533222 AK7Q96M32 723 aa9.16□□□□□ -0.94
CD44-236ENST00000533222 PHOX2BQ99453 314 aa9.16□□□□□ -0.94
CD44-236ENST00000533222 ZBED2Q9BTP6 218 aa9.16□□□□□ -0.94
CD44-236ENST00000533222 NLRP7Q8WX94 980 aa9.15□□□□□ -0.94
CD44-236ENST00000533222 DAXXQ9UER7 740 aaPredicted RBP9.15□□□□□ -0.94
CD44-236ENST00000533222 TRIM6-TRIM34B2RNG4 842 aa9.14□□□□□ -0.95
CD44-236ENST00000533222 BRPF1P55201 1214 aaPredicted RBP9.14□□□□□ -0.95
CD44-236ENST00000533222 RBM27Q9P2N5 1060 aaKnown RBP9.14□□□□□ -0.95
CD44-236ENST00000533222 ADGRG1Q9Y653 693 aa9.14□□□□□ -0.95
CD44-236ENST00000533222 SMAPO00193 183 aa9.12□□□□□ -0.95
CD44-236ENST00000533222 GPBP1L1Q9HC44 474 aaPredicted RBP9.12□□□□□ -0.95
CD44-236ENST00000533222 PBX2P40425 430 aa9.11□□□□□ -0.95
CD44-236ENST00000533222 KCNH8Q96L42 1107 aa9.11□□□□□ -0.95
CD44-236ENST00000533222 PDE4DQ08499 809 aa9.1□□□□□ -0.95
CD44-236ENST00000533222 NEUROD2Q15784 382 aa9.1□□□□□ -0.95
CD44-236ENST00000533222 METTL3Q86U44 580 aaKnown RBP9.1□□□□□ -0.95
CD44-236ENST00000533222 NUDT18Q6ZVK8 323 aa9.09□□□□□ -0.95
CD44-236ENST00000533222 PXYLP1Q8TE99 480 aa9.09□□□□□ -0.95
CD44-236ENST00000533222 REPIN1Q9BWE0 567 aaKnown RBP9.09□□□□□ -0.95
CD44-236ENST00000533222 KIAA1468Q9P260 1216 aa9.09□□□□□ -0.95
CD44-236ENST00000533222 VPS9D1Q9Y2B5 631 aa9.09□□□□□ -0.95
CD44-236ENST00000533222 POTEGQ6S5H5 508 aa9.08□□□□□ -0.96
CD44-236ENST00000533222 KRTAP3-3Q9BYR6 98 aa9.08□□□□□ -0.96
CD44-236ENST00000533222 KRTAP3-2Q9BYR7 98 aa9.08□□□□□ -0.96
CD44-236ENST00000533222 SEPT9Q9UHD8 586 aaPredicted RBP9.08□□□□□ -0.96
CD44-236ENST00000533222 PNMA3Q9UL41 463 aa9.08□□□□□ -0.96
CD44-236ENST00000533222 POTEMA6NI47 508 aa9.07□□□□□ -0.96
CD44-236ENST00000533222 LSM11P83369 360 aaKnown RBP eCLIP9.07□□□□□ -0.96
CD44-236ENST00000533222 AMHR2Q16671 573 aa9.07□□□□□ -0.96
CD44-236ENST00000533222 PARP9Q8IXQ6 854 aa9.07□□□□□ -0.96
CD44-236ENST00000533222 TATDN2Q93075 761 aa9.07□□□□□ -0.96
CD44-236ENST00000533222 EYA1Q99502 592 aa9.07□□□□□ -0.96
CD44-236ENST00000533222 NBPF26B4DH59 902 aa9.06□□□□□ -0.96
CD44-236ENST00000533222 MDM2Q00987 491 aaPredicted RBP9.06□□□□□ -0.96
CD44-236ENST00000533222 PACS2Q86VP3 889 aa9.05□□□□□ -0.96
CD44-236ENST00000533222 SLC4A5Q9BY07 1137 aa9.05□□□□□ -0.96
CD44-236ENST00000533222 OATP04181 439 aa9.04□□□□□ -0.96
CD44-236ENST00000533222 TTLL12Q14166 644 aaPredicted RBP9.04□□□□□ -0.96
CD44-236ENST00000533222 ADGRD1Q6QNK2 874 aa9.04□□□□□ -0.96
CD44-236ENST00000533222 ANKRD13DQ6ZTN6 518 aa9.04□□□□□ -0.96
CD44-236ENST00000533222 RBM46Q8TBY0 533 aaKnown RBP9.04□□□□□ -0.96
CD44-236ENST00000533222 KDM4CQ9H3R0 1056 aa9.04□□□□□ -0.96
CD44-236ENST00000533222 RABGEF1Q9UJ41 708 aa9.04□□□□□ -0.96
CD44-236ENST00000533222 RCCD1A6NED2 376 aa9.03□□□□□ -0.96
CD44-236ENST00000533222 ONECUT3O60422 494 aaPredicted RBP9.02□□□□□ -0.97
CD44-236ENST00000533222 GIGYF2Q6Y7W6 1299 aaKnown RBP9.02□□□□□ -0.97
CD44-236ENST00000533222 TMUB1Q9BVT8 246 aa9.02□□□□□ -0.97
CD44-236ENST00000533222 BHMG1C9JSJ3 638 aaPredicted RBP9□□□□□ -0.97
CD44-236ENST00000533222 TK2O00142 265 aa9□□□□□ -0.97
CD44-236ENST00000533222 HRO43593 1189 aa9□□□□□ -0.97
CD44-236ENST00000533222 MS4A1P11836 297 aa9□□□□□ -0.97
CD44-236ENST00000533222 CDAN1Q8IWY9 1227 aa9□□□□□ -0.97
CD44-236ENST00000533222 GPCPD1Q9NPB8 672 aa8.99□□□□□ -0.97
CD44-236ENST00000533222 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.98□□□□□ -0.97
CD44-236ENST00000533222 DNAJB2P25686 324 aa8.98□□□□□ -0.97
CD44-236ENST00000533222 TMEM134Q9H6X4 195 aa8.98□□□□□ -0.97
CD44-236ENST00000533222 CLCN1P35523 988 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms