RNA–Protein interactions for RNA: ENST00000532918.4

COLCA1-203, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,366 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-203ENST00000532918 NRDCO43847 1150 aa13.52□□□□□ -0.25
COLCA1-203ENST00000532918 CLSTN1O94985 981 aa13.51□□□□□ -0.25
COLCA1-203ENST00000532918 MYOM3Q5VTT5 1437 aa13.51□□□□□ -0.25
COLCA1-203ENST00000532918 AQRO60306 1485 aaKnown RBP eCLIP13.51□□□□□ -0.25
COLCA1-203ENST00000532918 IFT140Q96RY7 1462 aa13.51□□□□□ -0.25
COLCA1-203ENST00000532918 RAD54L2Q9Y4B4 1467 aa13.51□□□□□ -0.25
COLCA1-203ENST00000532918 L3MBTL2Q969R5 705 aa13.5□□□□□ -0.25
COLCA1-203ENST00000532918 CGNL1Q0VF96 1302 aa13.5□□□□□ -0.25
COLCA1-203ENST00000532918 FRAT2O75474 233 aaPredicted RBP13.5□□□□□ -0.25
COLCA1-203ENST00000532918 TTC5Q8N0Z6 440 aa13.5□□□□□ -0.25
COLCA1-203ENST00000532918 PHLDB1Q86UU1 1377 aa13.5□□□□□ -0.25
COLCA1-203ENST00000532918 RWDD1Q9H446 243 aaPredicted RBP13.49□□□□□ -0.25
COLCA1-203ENST00000532918 ITPRIPQ8IWB1 547 aa13.49□□□□□ -0.25
COLCA1-203ENST00000532918 IGF1RP08069 1367 aa13.48□□□□□ -0.25
COLCA1-203ENST00000532918 TEFQ10587 303 aa13.48□□□□□ -0.25
COLCA1-203ENST00000532918 HSCBQ8IWL3 235 aa13.48□□□□□ -0.25
COLCA1-203ENST00000532918 SYNJ2O15056 1496 aa13.47□□□□□ -0.25
COLCA1-203ENST00000532918 PHF23Q9BUL5 403 aaPredicted RBP13.46□□□□□ -0.25
COLCA1-203ENST00000532918 DHX57Q6P158 1386 aaKnown RBP13.46□□□□□ -0.25
COLCA1-203ENST00000532918 MINK1Q8N4C8 1332 aaPredicted RBP13.46□□□□□ -0.25
COLCA1-203ENST00000532918 TPRNQ4KMQ1 711 aa13.46□□□□□ -0.25
COLCA1-203ENST00000532918 NLRP13Q86W25 1043 aa13.46□□□□□ -0.26
COLCA1-203ENST00000532918 SMC4Q9NTJ3 1288 aa13.45□□□□□ -0.26
COLCA1-203ENST00000532918 POGZQ7Z3K3 1410 aa13.45□□□□□ -0.26
COLCA1-203ENST00000532918 APBB1O00213 710 aa13.45□□□□□ -0.26
COLCA1-203ENST00000532918 PRG4Q92954 1404 aaPredicted RBP13.45□□□□□ -0.26
COLCA1-203ENST00000532918 WASHC2AQ641Q2 1341 aa13.44□□□□□ -0.26
COLCA1-203ENST00000532918 CUX1P39880 1505 aa13.44□□□□□ -0.26
COLCA1-203ENST00000532918 HTATSF1O43719 755 aaKnown RBP13.44□□□□□ -0.26
COLCA1-203ENST00000532918 SLC4A10Q6U841 1118 aa13.43□□□□□ -0.26
COLCA1-203ENST00000532918 PMFBP1Q8TBY8 1022 aa13.43□□□□□ -0.26
COLCA1-203ENST00000532918 NEXNQ0ZGT2 675 aa13.43□□□□□ -0.26
COLCA1-203ENST00000532918 THEMISQ8N1K5 641 aaPredicted RBP13.43□□□□□ -0.26
COLCA1-203ENST00000532918 CCDC34Q96HJ3 373 aa13.42□□□□□ -0.26
COLCA1-203ENST00000532918 KIF15Q9NS87 1388 aa13.42□□□□□ -0.26
COLCA1-203ENST00000532918 NOL10Q9BSC4 688 aaKnown RBP13.41□□□□□ -0.26
COLCA1-203ENST00000532918 ARHGAP5Q13017 1502 aa13.41□□□□□ -0.26
COLCA1-203ENST00000532918 RAPGEF4Q8WZA2 1011 aa13.41□□□□□ -0.26
COLCA1-203ENST00000532918 PRDM2Q13029 1718 aa13.41□□□□□ -0.26
COLCA1-203ENST00000532918 GPRASP1Q5JY77 1395 aa13.4□□□□□ -0.26
COLCA1-203ENST00000532918 SYTL4Q96C24 671 aaPredicted RBP13.4□□□□□ -0.26
COLCA1-203ENST00000532918 PROSER2Q86WR7 435 aaPredicted RBP13.4□□□□□ -0.26
COLCA1-203ENST00000532918 MIA2Q96PC5 1412 aa13.4□□□□□ -0.26
COLCA1-203ENST00000532918 PDE3BQ13370 1112 aa13.4□□□□□ -0.27
COLCA1-203ENST00000532918 LRRFIP1Q32MZ4 808 aaKnown RBP13.4□□□□□ -0.27
COLCA1-203ENST00000532918 TNNT3P45378 269 aaPredicted RBP13.39□□□□□ -0.27
COLCA1-203ENST00000532918 RCAN3Q9UKA8 241 aa13.39□□□□□ -0.27
COLCA1-203ENST00000532918 L1TD1Q5T7N2 865 aaKnown RBP13.39□□□□□ -0.27
COLCA1-203ENST00000532918 PLEKHH2Q8IVE3 1493 aa13.39□□□□□ -0.27
COLCA1-203ENST00000532918 SF3B2Q13435 895 aaKnown RBP13.39□□□□□ -0.27
COLCA1-203ENST00000532918 AMOTL1Q8IY63 956 aa13.39□□□□□ -0.27
COLCA1-203ENST00000532918 CC2D2AQ9P2K1 1620 aa13.38□□□□□ -0.27
COLCA1-203ENST00000532918 DDX58O95786 925 aaKnown RBP13.38□□□□□ -0.27
COLCA1-203ENST00000532918 TXNDC2Q86VQ3 553 aa13.38□□□□□ -0.27
COLCA1-203ENST00000532918 CENPJQ9HC77 1338 aaPredicted RBP13.38□□□□□ -0.27
COLCA1-203ENST00000532918 ST20-MTHFSA0A0A6YYL1 179 aa13.37□□□□□ -0.27
COLCA1-203ENST00000532918 TRIM34Q9BYJ4 488 aa13.37□□□□□ -0.27
COLCA1-203ENST00000532918 PLCB2Q00722 1185 aa13.37□□□□□ -0.27
COLCA1-203ENST00000532918 CHMP4CQ96CF2 233 aa13.37□□□□□ -0.27
COLCA1-203ENST00000532918 PANK3Q9H999 370 aa13.37□□□□□ -0.27
COLCA1-203ENST00000532918 HMGB2P26583 209 aaKnown RBP13.36□□□□□ -0.27
COLCA1-203ENST00000532918 TRIM6-TRIM34B2RNG4 842 aa13.36□□□□□ -0.27
COLCA1-203ENST00000532918 DIAPH1O60610 1272 aaKnown RBP13.36□□□□□ -0.27
COLCA1-203ENST00000532918 CFTRP13569 1480 aa13.36□□□□□ -0.27
COLCA1-203ENST00000532918 MYBBP1AQ9BQG0 1328 aaKnown RBP13.35□□□□□ -0.27
COLCA1-203ENST00000532918 CHAF1AQ13111 956 aaPredicted RBP13.35□□□□□ -0.27
COLCA1-203ENST00000532918 TOMM22Q9NS69 142 aa13.35□□□□□ -0.27
COLCA1-203ENST00000532918 CCDC146Q8IYE0 955 aa13.34□□□□□ -0.27
COLCA1-203ENST00000532918 HSP90B1P14625 803 aaKnown RBP13.34□□□□□ -0.27
COLCA1-203ENST00000532918 KIF3AQ9Y496 699 aa13.34□□□□□ -0.27
COLCA1-203ENST00000532918 CTDP1Q9Y5B0 961 aaPredicted RBP13.34□□□□□ -0.27
COLCA1-203ENST00000532918 ANKLE2Q86XL3 938 aa13.33□□□□□ -0.27
COLCA1-203ENST00000532918 NGEFQ8N5V2 710 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 NLRP2Q9NX02 1062 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 PTMSP20962 102 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 KIAA2012Q0VF49 1180 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 B4GALNT3Q6L9W6 998 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 HMGXB3Q12766 1538 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 FYCO1Q9BQS8 1478 aa13.33□□□□□ -0.28
COLCA1-203ENST00000532918 KLHL34Q8N239 644 aa13.32□□□□□ -0.28
COLCA1-203ENST00000532918 RRBP1Q9P2E9 1410 aaKnown RBP13.32□□□□□ -0.28
COLCA1-203ENST00000532918 ANKRD50Q9ULJ7 1429 aa13.31□□□□□ -0.28
COLCA1-203ENST00000532918 MARCH6O60337 910 aa13.31□□□□□ -0.28
COLCA1-203ENST00000532918 CASKIN1Q8WXD9 1431 aa13.31□□□□□ -0.28
COLCA1-203ENST00000532918 DEKP35659 375 aaKnown RBP13.3□□□□□ -0.28
COLCA1-203ENST00000532918 VPS37DQ86XT2 251 aa13.3□□□□□ -0.28
COLCA1-203ENST00000532918 AFAP1Q8N556 730 aa13.3□□□□□ -0.28
COLCA1-203ENST00000532918 C9orf78Q9NZ63 289 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-203ENST00000532918 ESCO1Q5FWF5 840 aa13.3□□□□□ -0.28
COLCA1-203ENST00000532918 FGD6Q6ZV73 1430 aa13.3□□□□□ -0.28
COLCA1-203ENST00000532918 USP47Q96K76 1375 aa13.29□□□□□ -0.28
COLCA1-203ENST00000532918 RASSF8Q8NHQ8 419 aa13.29□□□□□ -0.28
COLCA1-203ENST00000532918 RBM33Q96EV2 1170 aaKnown RBP13.29□□□□□ -0.28
COLCA1-203ENST00000532918 NLRP6P59044 892 aa13.29□□□□□ -0.28
COLCA1-203ENST00000532918 NOP58Q9Y2X3 529 aaKnown RBP13.29□□□□□ -0.28
COLCA1-203ENST00000532918 RUSC2Q8N2Y8 1516 aa13.29□□□□□ -0.28
COLCA1-203ENST00000532918 MSNP26038 577 aaKnown RBP13.29□□□□□ -0.28
COLCA1-203ENST00000532918 SLC52A1Q9NWF4 448 aa13.29□□□□□ -0.28
COLCA1-203ENST00000532918 EIF2S2P20042 333 aaKnown RBP13.29□□□□□ -0.28
COLCA1-203ENST00000532918 SNAPC4Q5SXM2 1469 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms