RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 FBXW7Q969H0 707 aa14.46□□□□□ -0.09
PTPRK-220ENST00000531466 RABGEF1Q9UJ41 708 aa14.42□□□□□ -0.1
PTPRK-220ENST00000531466 DDX12PQ92771 950 aa14.38□□□□□ -0.11
PTPRK-220ENST00000531466 RBM33Q96EV2 1170 aaKnown RBP14.38□□□□□ -0.11
PTPRK-220ENST00000531466 EPAS1Q99814 870 aa14.38□□□□□ -0.11
PTPRK-220ENST00000531466 C6orf132Q5T0Z8 1188 aa14.37□□□□□ -0.11
PTPRK-220ENST00000531466 ANKK1Q8NFD2 765 aa14.36□□□□□ -0.11
PTPRK-220ENST00000531466 KIAA1468Q9P260 1216 aa14.36□□□□□ -0.11
PTPRK-220ENST00000531466 SPRYD3Q8NCJ5 442 aa14.34□□□□□ -0.11
PTPRK-220ENST00000531466 BCAMP50895 628 aa14.32□□□□□ -0.12
PTPRK-220ENST00000531466 SEPT9Q9UHD8 586 aaPredicted RBP14.31□□□□□ -0.12
PTPRK-220ENST00000531466 IFFO2Q5TF58 517 aa14.29□□□□□ -0.12
PTPRK-220ENST00000531466 LAPTM4BQ86VI4 370 aa14.29□□□□□ -0.12
PTPRK-220ENST00000531466 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.29□□□□□ -0.12
PTPRK-220ENST00000531466 NBR1Q14596 966 aa14.28□□□□□ -0.12
PTPRK-220ENST00000531466 ZFRQ96KR1 1074 aaKnown RBP14.28□□□□□ -0.12
PTPRK-220ENST00000531466 TRIM6-TRIM34B2RNG4 842 aa14.27□□□□□ -0.13
PTPRK-220ENST00000531466 ONECUT3O60422 494 aaPredicted RBP14.26□□□□□ -0.13
PTPRK-220ENST00000531466 PDIA6Q15084 440 aa14.26□□□□□ -0.13
PTPRK-220ENST00000531466 SOWAHBA6NEL2 793 aa14.25□□□□□ -0.13
PTPRK-220ENST00000531466 A0A0G2JS52 829 aa14.24□□□□□ -0.13
PTPRK-220ENST00000531466 MAP3K7O43318 606 aa14.24□□□□□ -0.13
PTPRK-220ENST00000531466 EN1Q05925 392 aaPredicted RBP14.24□□□□□ -0.13
PTPRK-220ENST00000531466 TSR1Q2NL82 804 aaKnown RBP14.24□□□□□ -0.13
PTPRK-220ENST00000531466 AMER1Q5JTC6 1135 aaPredicted RBP14.23□□□□□ -0.13
PTPRK-220ENST00000531466 CFAP44Q96MT7 982 aa14.23□□□□□ -0.13
PTPRK-220ENST00000531466 PAXIP1Q6ZW49 1069 aaPredicted RBP14.22□□□□□ -0.13
PTPRK-220ENST00000531466 RTN4Q9NQC3 1192 aaKnown RBP14.22□□□□□ -0.13
PTPRK-220ENST00000531466 SPDYE16A6NNV3 312 aaPredicted RBP14.21□□□□□ -0.13
PTPRK-220ENST00000531466 WBP1LQ9NX94 342 aa14.21□□□□□ -0.13
PTPRK-220ENST00000531466 E2F4Q16254 413 aa14.2□□□□□ -0.14
PTPRK-220ENST00000531466 FAM98CQ17RN3 349 aaKnown RBP14.2□□□□□ -0.14
PTPRK-220ENST00000531466 TSKSQ9UJT2 592 aa14.18□□□□□ -0.14
PTPRK-220ENST00000531466 RGS20O76081 388 aa14.17□□□□□ -0.14
PTPRK-220ENST00000531466 ITGBL1O95965 494 aaPredicted RBP14.16□□□□□ -0.14
PTPRK-220ENST00000531466 WDR70Q9NW82 654 aa14.16□□□□□ -0.14
PTPRK-220ENST00000531466 PRIM1P49642 420 aaKnown RBP14.15□□□□□ -0.14
PTPRK-220ENST00000531466 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.15□□□□□ -0.14
PTPRK-220ENST00000531466 GRXCR2A6NFK2 248 aa14.14□□□□□ -0.15
PTPRK-220ENST00000531466 PACS2Q86VP3 889 aa14.14□□□□□ -0.15
PTPRK-220ENST00000531466 LRCH3Q96II8 777 aa14.14□□□□□ -0.15
PTPRK-220ENST00000531466 HPS5Q9UPZ3 1129 aa14.14□□□□□ -0.15
PTPRK-220ENST00000531466 NYAP1Q6ZVC0 841 aa14.12□□□□□ -0.15
PTPRK-220ENST00000531466 TSR3Q9UJK0 312 aaKnown RBP14.11□□□□□ -0.15
PTPRK-220ENST00000531466 CDCA7LQ96GN5 454 aa14.1□□□□□ -0.15
PTPRK-220ENST00000531466 SMAPO00193 183 aa14.09□□□□□ -0.15
PTPRK-220ENST00000531466 ARIH1Q9Y4X5 557 aaPredicted RBP14.09□□□□□ -0.15
PTPRK-220ENST00000531466 PRSS12P56730 875 aa14.08□□□□□ -0.16
PTPRK-220ENST00000531466 FAM198AQ9UFP1 575 aa14.08□□□□□ -0.16
PTPRK-220ENST00000531466 IRX2Q9BZI1 471 aaPredicted RBP14.07□□□□□ -0.16
PTPRK-220ENST00000531466 KCNC4Q03721 635 aa14.06□□□□□ -0.16
PTPRK-220ENST00000531466 CDHR5Q9HBB8 845 aa14.05□□□□□ -0.16
PTPRK-220ENST00000531466 C3orf80F5H4A9 247 aa14.04□□□□□ -0.16
PTPRK-220ENST00000531466 OSBPP22059 807 aa14.03□□□□□ -0.16
PTPRK-220ENST00000531466 SAMD7Q7Z3H4 446 aa14.03□□□□□ -0.16
PTPRK-220ENST00000531466 CERKQ8TCT0 537 aa14.03□□□□□ -0.16
PTPRK-220ENST00000531466 PPP4CP60510 307 aa14.01□□□□□ -0.17
PTPRK-220ENST00000531466 TATDN2Q93075 761 aa14□□□□□ -0.17
PTPRK-220ENST00000531466 PNMA3Q9UL41 463 aa14□□□□□ -0.17
PTPRK-220ENST00000531466 NBPF26B4DH59 902 aa13.99□□□□□ -0.17
PTPRK-220ENST00000531466 NUDT18Q6ZVK8 323 aa13.95□□□□□ -0.18
PTPRK-220ENST00000531466 RNF40O75150 1001 aa13.93□□□□□ -0.18
PTPRK-220ENST00000531466 TJAP1Q5JTD0 557 aa13.9□□□□□ -0.18
PTPRK-220ENST00000531466 PADI6Q6TGC4 694 aa13.9□□□□□ -0.18
PTPRK-220ENST00000531466 RBM27Q9P2N5 1060 aaKnown RBP13.9□□□□□ -0.18
PTPRK-220ENST00000531466 MTRQ99707 1265 aa13.88□□□□□ -0.19
PTPRK-220ENST00000531466 NPDC1Q9NQX5 325 aaPredicted RBP13.88□□□□□ -0.19
PTPRK-220ENST00000531466 TSHZ2Q9NRE2 1034 aa13.88□□□□□ -0.19
PTPRK-220ENST00000531466 HDGFP51858 240 aaKnown RBP13.86□□□□□ -0.19
PTPRK-220ENST00000531466 TTC13Q8NBP0 860 aa13.86□□□□□ -0.19
PTPRK-220ENST00000531466 MLLT3P42568 568 aaPredicted RBP13.84□□□□□ -0.19
PTPRK-220ENST00000531466 APLP1P51693 650 aa13.84□□□□□ -0.19
PTPRK-220ENST00000531466 IL21Q9HBE4 155 aa13.83□□□□□ -0.2
PTPRK-220ENST00000531466 SWT1Q5T5J6 900 aaKnown RBP13.82□□□□□ -0.2
PTPRK-220ENST00000531466 KCNV2Q8TDN2 545 aa13.81□□□□□ -0.2
PTPRK-220ENST00000531466 ZNF516Q92618 1163 aa13.81□□□□□ -0.2
PTPRK-220ENST00000531466 ARHGEF1Q92888 912 aaKnown RBP13.81□□□□□ -0.2
PTPRK-220ENST00000531466 Q6ZNB5 142 aa13.8□□□□□ -0.2
PTPRK-220ENST00000531466 PPP1R18Q6NYC8 613 aa13.76□□□□□ -0.21
PTPRK-220ENST00000531466 SLF2Q8IX21 1173 aa13.76□□□□□ -0.21
PTPRK-220ENST00000531466 EYA1Q99502 592 aa13.76□□□□□ -0.21
PTPRK-220ENST00000531466 COPS2P61201 443 aa13.74□□□□□ -0.21
PTPRK-220ENST00000531466 NKX2-3Q8TAU0 364 aa13.74□□□□□ -0.21
PTPRK-220ENST00000531466 PRKD2Q9BZL6 878 aa13.74□□□□□ -0.21
PTPRK-220ENST00000531466 NECTIN2Q92692 538 aa13.72□□□□□ -0.21
PTPRK-220ENST00000531466 PTGDRQ13258 359 aa13.71□□□□□ -0.21
PTPRK-220ENST00000531466 SLC4A3P48751 1232 aa13.7□□□□□ -0.22
PTPRK-220ENST00000531466 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.7□□□□□ -0.22
PTPRK-220ENST00000531466 GFRA3O60609 400 aa13.69□□□□□ -0.22
PTPRK-220ENST00000531466 NUTM2FA1L443 756 aa13.67□□□□□ -0.22
PTPRK-220ENST00000531466 LAPTM4AQ15012 233 aa13.66□□□□□ -0.22
PTPRK-220ENST00000531466 FAM161AQ3B820 660 aa13.64□□□□□ -0.23
PTPRK-220ENST00000531466 ADGRG1Q9Y653 693 aa13.64□□□□□ -0.23
PTPRK-220ENST00000531466 DNAJB2P25686 324 aa13.63□□□□□ -0.23
PTPRK-220ENST00000531466 RBM46Q8TBY0 533 aaKnown RBP13.63□□□□□ -0.23
PTPRK-220ENST00000531466 V9GY48 417 aaPredicted RBP13.63□□□□□ -0.23
PTPRK-220ENST00000531466 ZPR1O75312 459 aa13.62□□□□□ -0.23
PTPRK-220ENST00000531466 PCDHB3Q9Y5E6 796 aa13.62□□□□□ -0.23
PTPRK-220ENST00000531466 LCE2BO14633 110 aa13.61□□□□□ -0.23
PTPRK-220ENST00000531466 PRR14Q9BWN1 585 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms