RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 PTPREP23469 700 aa17.04■□□□□ 0.32
CSDE1-213ENST00000530784 EN1Q05925 392 aaPredicted RBP17.04■□□□□ 0.32
CSDE1-213ENST00000530784 TESPA1A2RU30 521 aaPredicted RBP17.03■□□□□ 0.32
CSDE1-213ENST00000530784 LSM11P83369 360 aaKnown RBP eCLIP17.02■□□□□ 0.32
CSDE1-213ENST00000530784 C6orf132Q5T0Z8 1188 aa17.02■□□□□ 0.32
CSDE1-213ENST00000530784 DMRTA1Q5VZB9 504 aa17.02■□□□□ 0.32
CSDE1-213ENST00000530784 MAP3K7O43318 606 aa17.01■□□□□ 0.31
CSDE1-213ENST00000530784 KCNH8Q96L42 1107 aa17■□□□□ 0.31
CSDE1-213ENST00000530784 TSR1Q2NL82 804 aaKnown RBP16.98■□□□□ 0.31
CSDE1-213ENST00000530784 ANKRD13DQ6ZTN6 518 aa16.98■□□□□ 0.31
CSDE1-213ENST00000530784 COL9A1P20849 921 aa16.96■□□□□ 0.31
CSDE1-213ENST00000530784 PPP1R3GB7ZBB8 358 aa16.92■□□□□ 0.3
CSDE1-213ENST00000530784 SMYD5Q6GMV2 418 aa16.91■□□□□ 0.3
CSDE1-213ENST00000530784 ZBED2Q9BTP6 218 aa16.9■□□□□ 0.3
CSDE1-213ENST00000530784 CDHR5Q9HBB8 845 aa16.9■□□□□ 0.3
CSDE1-213ENST00000530784 ADGRD1Q6QNK2 874 aa16.88■□□□□ 0.29
CSDE1-213ENST00000530784 TK2O00142 265 aa16.87■□□□□ 0.29
CSDE1-213ENST00000530784 RBM26Q5T8P6 1007 aaKnown RBP16.87■□□□□ 0.29
CSDE1-213ENST00000530784 SPNS2Q8IVW8 549 aa16.86■□□□□ 0.29
CSDE1-213ENST00000530784 VPS9D1Q9Y2B5 631 aa16.86■□□□□ 0.29
CSDE1-213ENST00000530784 SLC4A5Q9BY07 1137 aa16.85■□□□□ 0.29
CSDE1-213ENST00000530784 PROX2Q3B8N5 592 aa16.84■□□□□ 0.29
CSDE1-213ENST00000530784 NPDC1Q9NQX5 325 aaPredicted RBP16.83■□□□□ 0.28
CSDE1-213ENST00000530784 NUTM2FA1L443 756 aa16.82■□□□□ 0.28
CSDE1-213ENST00000530784 CERKQ8TCT0 537 aa16.79■□□□□ 0.28
CSDE1-213ENST00000530784 HRO43593 1189 aa16.78■□□□□ 0.28
CSDE1-213ENST00000530784 TULP1O00294 542 aaPredicted RBP16.77■□□□□ 0.28
CSDE1-213ENST00000530784 CDCA7LQ96GN5 454 aa16.76■□□□□ 0.27
CSDE1-213ENST00000530784 TRIM6-TRIM34B2RNG4 842 aa16.75■□□□□ 0.27
CSDE1-213ENST00000530784 PRSS12P56730 875 aa16.75■□□□□ 0.27
CSDE1-213ENST00000530784 PTGDRQ13258 359 aa16.75■□□□□ 0.27
CSDE1-213ENST00000530784 KIAA1468Q9P260 1216 aa16.73■□□□□ 0.27
CSDE1-213ENST00000530784 TSKSQ9UJT2 592 aa16.73■□□□□ 0.27
CSDE1-213ENST00000530784 BHMG1C9JSJ3 638 aaPredicted RBP16.72■□□□□ 0.27
CSDE1-213ENST00000530784 ONECUT3O60422 494 aaPredicted RBP16.72■□□□□ 0.27
CSDE1-213ENST00000530784 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.72■□□□□ 0.27
CSDE1-213ENST00000530784 RABGEF1Q9UJ41 708 aa16.72■□□□□ 0.27
CSDE1-213ENST00000530784 FAM198AQ9UFP1 575 aa16.71■□□□□ 0.27
CSDE1-213ENST00000530784 FCHSD2O94868 740 aa16.69■□□□□ 0.26
CSDE1-213ENST00000530784 MMRN1Q13201 1228 aa16.69■□□□□ 0.26
CSDE1-213ENST00000530784 PLSCR2Q9NRY7 297 aa16.69■□□□□ 0.26
CSDE1-213ENST00000530784 STAC3Q96MF2 364 aa16.68■□□□□ 0.26
CSDE1-213ENST00000530784 MYT1LQ9UL68 1186 aa16.68■□□□□ 0.26
CSDE1-213ENST00000530784 PADI6Q6TGC4 694 aa16.67■□□□□ 0.26
CSDE1-213ENST00000530784 GPIHBP1Q8IV16 184 aa16.67■□□□□ 0.26
CSDE1-213ENST00000530784 RBM27Q9P2N5 1060 aaKnown RBP16.67■□□□□ 0.26
CSDE1-213ENST00000530784 GPR37O15354 613 aa16.66■□□□□ 0.26
CSDE1-213ENST00000530784 PACS2Q86VP3 889 aa16.66■□□□□ 0.26
CSDE1-213ENST00000530784 BCANQ96GW7 911 aa16.66■□□□□ 0.26
CSDE1-213ENST00000530784 LMOD2Q6P5Q4 547 aa16.65■□□□□ 0.26
CSDE1-213ENST00000530784 TTC13Q8NBP0 860 aa16.65■□□□□ 0.26
CSDE1-213ENST00000530784 NBPF3Q9H094 633 aa16.65■□□□□ 0.26
CSDE1-213ENST00000530784 C3orf80F5H4A9 247 aa16.63■□□□□ 0.25
CSDE1-213ENST00000530784 MRPL50Q8N5N7 158 aaKnown RBP16.63■□□□□ 0.25
CSDE1-213ENST00000530784 SEPT9Q9UHD8 586 aaPredicted RBP16.62■□□□□ 0.25
CSDE1-213ENST00000530784 HIC1Q14526 733 aa16.61■□□□□ 0.25
CSDE1-213ENST00000530784 SMAPO00193 183 aa16.59■□□□□ 0.25
CSDE1-213ENST00000530784 FECHP22830 423 aa16.58■□□□□ 0.24
CSDE1-213ENST00000530784 TATDN2Q93075 761 aa16.58■□□□□ 0.24
CSDE1-213ENST00000530784 RNF166Q96A37 237 aaPredicted RBP16.58■□□□□ 0.24
CSDE1-213ENST00000530784 GNPATO15228 680 aa16.57■□□□□ 0.24
CSDE1-213ENST00000530784 PNMA3Q9UL41 463 aa16.57■□□□□ 0.24
CSDE1-213ENST00000530784 NBPF26B4DH59 902 aa16.56■□□□□ 0.24
CSDE1-213ENST00000530784 NUDT18Q6ZVK8 323 aa16.56■□□□□ 0.24
CSDE1-213ENST00000530784 LAPTM4BQ86VI4 370 aa16.56■□□□□ 0.24
CSDE1-213ENST00000530784 GOLGA8CPA6NN73 597 aa16.54■□□□□ 0.24
CSDE1-213ENST00000530784 FAM161AQ3B820 660 aa16.53■□□□□ 0.24
CSDE1-213ENST00000530784 FAM98CQ17RN3 349 aaKnown RBP16.52■□□□□ 0.24
CSDE1-213ENST00000530784 KCTD12Q96CX2 325 aaKnown RBP16.52■□□□□ 0.24
CSDE1-213ENST00000530784 ADGRG1Q9Y653 693 aa16.51■□□□□ 0.23
CSDE1-213ENST00000530784 ZFRQ96KR1 1074 aaKnown RBP16.5■□□□□ 0.23
CSDE1-213ENST00000530784 WNT2BQ93097 391 aa16.48■□□□□ 0.23
CSDE1-213ENST00000530784 EYA1Q99502 592 aa16.48■□□□□ 0.23
CSDE1-213ENST00000530784 ZC3H15Q8WU90 426 aaKnown RBP16.46■□□□□ 0.23
CSDE1-213ENST00000530784 ANKK1Q8NFD2 765 aa16.44■□□□□ 0.22
CSDE1-213ENST00000530784 RBM46Q8TBY0 533 aaKnown RBP16.43■□□□□ 0.22
CSDE1-213ENST00000530784 THSD4Q6ZMP0 1018 aa16.41■□□□□ 0.22
CSDE1-213ENST00000530784 OATP04181 439 aa16.4■□□□□ 0.22
CSDE1-213ENST00000530784 BCAMP50895 628 aa16.39■□□□□ 0.21
CSDE1-213ENST00000530784 MAP2K5Q13163 448 aa16.39■□□□□ 0.21
CSDE1-213ENST00000530784 SAMD7Q7Z3H4 446 aa16.39■□□□□ 0.21
CSDE1-213ENST00000530784 PXYLP1Q8TE99 480 aa16.39■□□□□ 0.21
CSDE1-213ENST00000530784 SOWAHBA6NEL2 793 aa16.38■□□□□ 0.21
CSDE1-213ENST00000530784 ZMYND10O75800 440 aa16.38■□□□□ 0.21
CSDE1-213ENST00000530784 METTL3Q86U44 580 aaKnown RBP16.37■□□□□ 0.21
CSDE1-213ENST00000530784 PTPN5P54829 565 aa16.36■□□□□ 0.21
CSDE1-213ENST00000530784 LRCH3Q96II8 777 aa16.36■□□□□ 0.21
CSDE1-213ENST00000530784 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.36■□□□□ 0.21
CSDE1-213ENST00000530784 RCCD1A6NED2 376 aa16.35■□□□□ 0.21
CSDE1-213ENST00000530784 IRF6O14896 467 aa16.35■□□□□ 0.21
CSDE1-213ENST00000530784 BARGINQ6ZT62 677 aa16.35■□□□□ 0.21
CSDE1-213ENST00000530784 MINK1Q8N4C8 1332 aaPredicted RBP16.35■□□□□ 0.21
CSDE1-213ENST00000530784 DNAJB2P25686 324 aa16.34■□□□□ 0.21
CSDE1-213ENST00000530784 HDGFP51858 240 aaKnown RBP16.33■□□□□ 0.2
CSDE1-213ENST00000530784 SWT1Q5T5J6 900 aaKnown RBP16.33■□□□□ 0.2
CSDE1-213ENST00000530784 HCSTQ9UBK5 93 aa16.33■□□□□ 0.2
CSDE1-213ENST00000530784 KRI1Q8N9T8 703 aaKnown RBP16.31■□□□□ 0.2
CSDE1-213ENST00000530784 PHOX2BQ99453 314 aa16.31■□□□□ 0.2
CSDE1-213ENST00000530784 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.3■□□□□ 0.2
CSDE1-213ENST00000530784 NLRP7Q8WX94 980 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms