RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 TNRQ92752 1358 aa6.89□□□□□ -1.31
USP47-208ENST00000529813 NCOA1Q15788 1441 aa6.89□□□□□ -1.31
USP47-208ENST00000529813 ADAMTSL3P82987 1691 aa6.89□□□□□ -1.31
USP47-208ENST00000529813 PPP1R15AO75807 674 aaPredicted RBP6.89□□□□□ -1.31
USP47-208ENST00000529813 SCAF1Q9H7N4 1312 aaKnown RBP6.89□□□□□ -1.31
USP47-208ENST00000529813 PTPRKQ15262 1439 aa6.89□□□□□ -1.31
USP47-208ENST00000529813 THEMISQ8N1K5 641 aaPredicted RBP6.88□□□□□ -1.31
USP47-208ENST00000529813 FER1L4A9Z1Z3 1794 aa6.88□□□□□ -1.31
USP47-208ENST00000529813 ZNF326Q5BKZ1 582 aaKnown RBP6.88□□□□□ -1.31
USP47-208ENST00000529813 DMRT2Q9Y5R5 561 aa6.88□□□□□ -1.31
USP47-208ENST00000529813 AGLP35573 1532 aa6.88□□□□□ -1.31
USP47-208ENST00000529813 INO80Q9ULG1 1556 aaPredicted RBP6.88□□□□□ -1.31
USP47-208ENST00000529813 FOXD1Q16676 465 aa6.87□□□□□ -1.31
USP47-208ENST00000529813 SLC4A1APQ9BWU0 796 aaKnown RBP6.87□□□□□ -1.31
USP47-208ENST00000529813 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP47-208ENST00000529813 ARHGEF5Q12774 1597 aa6.87□□□□□ -1.31
USP47-208ENST00000529813 ANKLE2Q86XL3 938 aa6.87□□□□□ -1.31
USP47-208ENST00000529813 TXNDC2Q86VQ3 553 aa6.87□□□□□ -1.31
USP47-208ENST00000529813 TCOF1Q13428 1488 aaKnown RBP6.86□□□□□ -1.31
USP47-208ENST00000529813 EID1Q9Y6B2 187 aa6.86□□□□□ -1.31
USP47-208ENST00000529813 DUOX2Q9NRD8 1548 aa6.86□□□□□ -1.31
USP47-208ENST00000529813 LMTK3Q96Q04 1460 aa6.86□□□□□ -1.31
USP47-208ENST00000529813 IDI1Q13907 227 aa6.86□□□□□ -1.31
USP47-208ENST00000529813 CFAP65Q6ZU64 1925 aaKnown RBP6.85□□□□□ -1.31
USP47-208ENST00000529813 PKD2Q13563 968 aa6.85□□□□□ -1.31
USP47-208ENST00000529813 CLTCQ00610 1675 aaKnown RBP6.85□□□□□ -1.31
USP47-208ENST00000529813 SLC26A8Q96RN1 970 aa6.85□□□□□ -1.31
USP47-208ENST00000529813 RGL3Q3MIN7 710 aa6.84□□□□□ -1.31
USP47-208ENST00000529813 ZNF335Q9H4Z2 1342 aaPredicted RBP6.84□□□□□ -1.31
USP47-208ENST00000529813 SHANK2Q9UPX8 1470 aa6.84□□□□□ -1.31
USP47-208ENST00000529813 ILDR1Q86SU0 546 aaPredicted RBP6.84□□□□□ -1.31
USP47-208ENST00000529813 DNMT1P26358 1616 aaKnown RBP6.84□□□□□ -1.31
USP47-208ENST00000529813 ERBINQ96RT1 1412 aa6.84□□□□□ -1.31
USP47-208ENST00000529813 ADGBQ8N7X0 1667 aa6.84□□□□□ -1.32
USP47-208ENST00000529813 RBM33Q96EV2 1170 aaKnown RBP6.83□□□□□ -1.32
USP47-208ENST00000529813 REREQ9P2R6 1566 aa6.83□□□□□ -1.32
USP47-208ENST00000529813 KDM5DQ9BY66 1539 aa6.83□□□□□ -1.32
USP47-208ENST00000529813 PIP4K2BP78356 416 aa6.83□□□□□ -1.32
USP47-208ENST00000529813 C14orf37Q86TY3 774 aa6.83□□□□□ -1.32
USP47-208ENST00000529813 PLXNC1O60486 1568 aa6.82□□□□□ -1.32
USP47-208ENST00000529813 CERKQ8TCT0 537 aa6.82□□□□□ -1.32
USP47-208ENST00000529813 SETD1BQ9UPS6 1966 aaKnown RBP6.82□□□□□ -1.32
USP47-208ENST00000529813 RRBP1Q9P2E9 1410 aaKnown RBP6.82□□□□□ -1.32
USP47-208ENST00000529813 NPATQ14207 1427 aa6.82□□□□□ -1.32
USP47-208ENST00000529813 ABCC3O15438 1527 aa6.82□□□□□ -1.32
USP47-208ENST00000529813 FAM135AQ9P2D6 1515 aa6.82□□□□□ -1.32
USP47-208ENST00000529813 LTKP29376 864 aa6.81□□□□□ -1.32
USP47-208ENST00000529813 C3P01024 1663 aa6.81□□□□□ -1.32
USP47-208ENST00000529813 PZPP20742 1482 aa6.81□□□□□ -1.32
USP47-208ENST00000529813 ROCK1Q13464 1354 aa6.81□□□□□ -1.32
USP47-208ENST00000529813 UBAP1LF5GYI3 381 aa6.81□□□□□ -1.32
USP47-208ENST00000529813 SLC52A1Q9NWF4 448 aa6.81□□□□□ -1.32
USP47-208ENST00000529813 MAST1Q9Y2H9 1570 aa6.8□□□□□ -1.32
USP47-208ENST00000529813 CAMSAP1Q5T5Y3 1602 aa6.8□□□□□ -1.32
USP47-208ENST00000529813 HDGFP51858 240 aaKnown RBP6.8□□□□□ -1.32
USP47-208ENST00000529813 MPHOSPH9Q99550 1183 aa6.8□□□□□ -1.32
USP47-208ENST00000529813 ERVK-7P63135 1459 aa6.8□□□□□ -1.32
USP47-208ENST00000529813 NAIPQ13075 1403 aa6.79□□□□□ -1.32
USP47-208ENST00000529813 ADGRL2O95490 1459 aa6.79□□□□□ -1.32
USP47-208ENST00000529813 A2ML1A8K2U0 1454 aa6.79□□□□□ -1.32
USP47-208ENST00000529813 UGGT1Q9NYU2 1555 aa6.79□□□□□ -1.32
USP47-208ENST00000529813 KDM2AQ9Y2K7 1162 aa6.78□□□□□ -1.32
USP47-208ENST00000529813 PROSER2Q86WR7 435 aaPredicted RBP6.78□□□□□ -1.32
USP47-208ENST00000529813 CEP170BQ9Y4F5 1589 aaPredicted RBP6.77□□□□□ -1.33
USP47-208ENST00000529813 CEP152O94986 1710 aa6.77□□□□□ -1.33
USP47-208ENST00000529813 FBXO41Q8TF61 875 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 RAB3GAP2Q9H2M9 1393 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 NPHP4O75161 1426 aaPredicted RBP6.76□□□□□ -1.33
USP47-208ENST00000529813 SETD5Q9C0A6 1442 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 NLRP1Q9C000 1473 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 PREX1Q8TCU6 1659 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 CROCC2H7BZ55 1655 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 NEUROD1Q13562 356 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 HFM1A2PYH4 1435 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 TMEM2Q9UHN6 1383 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP47-208ENST00000529813 STK26Q9P289 416 aa6.76□□□□□ -1.33
USP47-208ENST00000529813 PRDM15P57071 1507 aaPredicted RBP6.75□□□□□ -1.33
USP47-208ENST00000529813 PCGF6Q9BYE7 350 aa6.75□□□□□ -1.33
USP47-208ENST00000529813 ARHGAP31Q2M1Z3 1444 aa6.75□□□□□ -1.33
USP47-208ENST00000529813 MROH1Q8NDA8 1641 aa6.74□□□□□ -1.33
USP47-208ENST00000529813 MYO3AQ8NEV4 1616 aa6.74□□□□□ -1.33
USP47-208ENST00000529813 EIF2AK4Q9P2K8 1649 aaKnown RBP6.74□□□□□ -1.33
USP47-208ENST00000529813 RIMS2Q9UQ26 1411 aa6.74□□□□□ -1.33
USP47-208ENST00000529813 RNF17Q9BXT8 1623 aaKnown RBP6.74□□□□□ -1.33
USP47-208ENST00000529813 TOM1O60784 492 aa6.74□□□□□ -1.33
USP47-208ENST00000529813 SCAF11Q99590 1463 aaKnown RBP6.73□□□□□ -1.33
USP47-208ENST00000529813 TRIM26Q12899 539 aaPredicted RBP6.73□□□□□ -1.33
USP47-208ENST00000529813 PTPRTO14522 1441 aa6.73□□□□□ -1.33
USP47-208ENST00000529813 MROH2AA6NES4 1674 aa6.73□□□□□ -1.33
USP47-208ENST00000529813 CCDC144AA2RUR9 1427 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 NOS1P29475 1434 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 PLEKHG5O94827 1062 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 SAFB2Q14151 953 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP47-208ENST00000529813 EFCAB6Q5THR3 1501 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 NUTM2FA1L443 756 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 VGFO15240 615 aaPredicted RBP6.72□□□□□ -1.33
USP47-208ENST00000529813 KCNA6P17658 529 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 AMOTL2Q9Y2J4 779 aa6.72□□□□□ -1.33
USP47-208ENST00000529813 SPATA31D1Q6ZQQ2 1576 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms