RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 EIF2AK4Q9P2K8 1649 aaKnown RBP20.67■□□□□ 0.9
ECHDC1-220ENST00000528402 ZNF518AQ6AHZ1 1483 aa20.66■□□□□ 0.9
ECHDC1-220ENST00000528402 DEPDC5O75140 1603 aa20.65■□□□□ 0.9
ECHDC1-220ENST00000528402 YTHDC1Q96MU7 727 aaKnown RBP20.65■□□□□ 0.9
ECHDC1-220ENST00000528402 KANK1Q14678 1352 aa20.65■□□□□ 0.9
ECHDC1-220ENST00000528402 DHX29Q7Z478 1369 aaKnown RBP20.65■□□□□ 0.9
ECHDC1-220ENST00000528402 POLR1AO95602 1720 aaPredicted RBP20.65■□□□□ 0.9
ECHDC1-220ENST00000528402 RALGAPBQ86X10 1494 aa20.64■□□□□ 0.9
ECHDC1-220ENST00000528402 ARID4BQ4LE39 1312 aaPredicted RBP20.64■□□□□ 0.89
ECHDC1-220ENST00000528402 STAC3Q96MF2 364 aa20.62■□□□□ 0.89
ECHDC1-220ENST00000528402 WASHC2AQ641Q2 1341 aa20.62■□□□□ 0.89
ECHDC1-220ENST00000528402 NEO1Q92859 1461 aa20.62■□□□□ 0.89
ECHDC1-220ENST00000528402 PLA2R1Q13018 1463 aa20.61■□□□□ 0.89
ECHDC1-220ENST00000528402 CCDC7Q96M83 1385 aa20.59■□□□□ 0.89
ECHDC1-220ENST00000528402 DCAF11Q8TEB1 546 aa20.59■□□□□ 0.89
ECHDC1-220ENST00000528402 MYT1LQ9UL68 1186 aa20.59■□□□□ 0.89
ECHDC1-220ENST00000528402 VWDEQ8N2E2 1590 aa20.58■□□□□ 0.89
ECHDC1-220ENST00000528402 TET3O43151 1660 aa20.58■□□□□ 0.89
ECHDC1-220ENST00000528402 MLH3Q9UHC1 1453 aa20.58■□□□□ 0.89
ECHDC1-220ENST00000528402 KDM5CP41229 1560 aa20.57■□□□□ 0.88
ECHDC1-220ENST00000528402 KIDINS220Q9ULH0 1771 aa20.57■□□□□ 0.88
ECHDC1-220ENST00000528402 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
ECHDC1-220ENST00000528402 USP47Q96K76 1375 aa20.56■□□□□ 0.88
ECHDC1-220ENST00000528402 POGZQ7Z3K3 1410 aa20.56■□□□□ 0.88
ECHDC1-220ENST00000528402 GLI2P10070 1586 aa20.56■□□□□ 0.88
ECHDC1-220ENST00000528402 PTPRTO14522 1441 aa20.55■□□□□ 0.88
ECHDC1-220ENST00000528402 CNTLNQ9NXG0 1405 aa20.55■□□□□ 0.88
ECHDC1-220ENST00000528402 PRDM15P57071 1507 aaPredicted RBP20.54■□□□□ 0.88
ECHDC1-220ENST00000528402 E9PCH4 1651 aa20.54■□□□□ 0.88
ECHDC1-220ENST00000528402 ZNF326Q5BKZ1 582 aaKnown RBP20.53■□□□□ 0.88
ECHDC1-220ENST00000528402 CARD11Q9BXL7 1154 aa20.53■□□□□ 0.88
ECHDC1-220ENST00000528402 TRPM2O94759 1503 aa20.53■□□□□ 0.88
ECHDC1-220ENST00000528402 KIF3BO15066 747 aa20.53■□□□□ 0.88
ECHDC1-220ENST00000528402 A2MP01023 1474 aa20.52■□□□□ 0.88
ECHDC1-220ENST00000528402 PRAG1Q86YV5 1406 aa20.52■□□□□ 0.88
ECHDC1-220ENST00000528402 KDM2AQ9Y2K7 1162 aa20.52■□□□□ 0.87
ECHDC1-220ENST00000528402 NEURL4Q96JN8 1562 aa20.51■□□□□ 0.87
ECHDC1-220ENST00000528402 LAMC1P11047 1609 aa20.51■□□□□ 0.87
ECHDC1-220ENST00000528402 SPHKAPQ2M3C7 1700 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 BCORL1Q5H9F3 1711 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 ROCK2O75116 1388 aaKnown RBP20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 RIMBP3CA6NJZ7 1639 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 RIMBP3BA6NNM3 1639 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 RIMBP3Q9UFD9 1639 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 HECW2Q9P2P5 1572 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 LMTK2Q8IWU2 1503 aa20.5■□□□□ 0.87
ECHDC1-220ENST00000528402 MAP3K4Q9Y6R4 1608 aa20.49■□□□□ 0.87
ECHDC1-220ENST00000528402 KIF7Q2M1P5 1343 aa20.49■□□□□ 0.87
ECHDC1-220ENST00000528402 TRPM1Q7Z4N2 1603 aa20.49■□□□□ 0.87
ECHDC1-220ENST00000528402 RNF17Q9BXT8 1623 aaKnown RBP20.49■□□□□ 0.87
ECHDC1-220ENST00000528402 C11orf95C9JLR9 678 aaPredicted RBP20.48■□□□□ 0.87
ECHDC1-220ENST00000528402 GPRASP1Q5JY77 1395 aa20.48■□□□□ 0.87
ECHDC1-220ENST00000528402 CYB5RLQ6IPT4 315 aa20.47■□□□□ 0.87
ECHDC1-220ENST00000528402 CEP152O94986 1710 aa20.47■□□□□ 0.87
ECHDC1-220ENST00000528402 MROH1Q8NDA8 1641 aa20.46■□□□□ 0.87
ECHDC1-220ENST00000528402 RGL3Q3MIN7 710 aa20.45■□□□□ 0.86
ECHDC1-220ENST00000528402 GTF3C3Q9Y5Q9 886 aa20.44■□□□□ 0.86
ECHDC1-220ENST00000528402 EFCAB6Q5THR3 1501 aa20.41■□□□□ 0.86
ECHDC1-220ENST00000528402 CLTCL1P53675 1640 aa20.38■□□□□ 0.85
ECHDC1-220ENST00000528402 RICTORQ6R327 1708 aa20.38■□□□□ 0.85
ECHDC1-220ENST00000528402 ST20-MTHFSA0A0A6YYL1 179 aa20.37■□□□□ 0.85
ECHDC1-220ENST00000528402 PRKRIP1Q9H875 184 aaPredicted RBP20.36■□□□□ 0.85
ECHDC1-220ENST00000528402 FRMPD1Q5SYB0 1578 aa20.36■□□□□ 0.85
ECHDC1-220ENST00000528402 KIF1BO60333 1816 aa20.36■□□□□ 0.85
ECHDC1-220ENST00000528402 ABCA6Q8N139 1617 aa20.36■□□□□ 0.85
ECHDC1-220ENST00000528402 DIP2BQ9P265 1576 aa20.33■□□□□ 0.85
ECHDC1-220ENST00000528402 PPRC1Q5VV67 1664 aaKnown RBP20.33■□□□□ 0.85
ECHDC1-220ENST00000528402 KIAA1210Q9ULL0 1709 aa20.33■□□□□ 0.84
ECHDC1-220ENST00000528402 SLC24A1O60721 1099 aa20.33■□□□□ 0.84
ECHDC1-220ENST00000528402 MADDQ8WXG6 1647 aa20.32■□□□□ 0.84
ECHDC1-220ENST00000528402 FAM69CQ0P6D2 419 aa20.32■□□□□ 0.84
ECHDC1-220ENST00000528402 DIP2CQ9Y2E4 1556 aa20.32■□□□□ 0.84
ECHDC1-220ENST00000528402 RAPGEF3O95398 923 aa20.31■□□□□ 0.84
ECHDC1-220ENST00000528402 KTN1Q86UP2 1357 aaKnown RBP20.31■□□□□ 0.84
ECHDC1-220ENST00000528402 NBPF1Q3BBV0 1214 aa20.3■□□□□ 0.84
ECHDC1-220ENST00000528402 ZMYM4Q5VZL5 1548 aa20.29■□□□□ 0.84
ECHDC1-220ENST00000528402 MYOM2P54296 1465 aa20.29■□□□□ 0.84
ECHDC1-220ENST00000528402 ZC3H13Q5T200 1668 aaKnown RBP20.29■□□□□ 0.84
ECHDC1-220ENST00000528402 WASHC2CQ9Y4E1 1318 aa20.28■□□□□ 0.84
ECHDC1-220ENST00000528402 GGT6Q6P531 493 aa20.28■□□□□ 0.84
ECHDC1-220ENST00000528402 ABCC3O15438 1527 aa20.27■□□□□ 0.84
ECHDC1-220ENST00000528402 ARHGAP31Q2M1Z3 1444 aa20.27■□□□□ 0.84
ECHDC1-220ENST00000528402 RPGRIP1LQ68CZ1 1315 aa20.26■□□□□ 0.83
ECHDC1-220ENST00000528402 TMF1P82094 1093 aa20.25■□□□□ 0.83
ECHDC1-220ENST00000528402 PPP6R1Q9UPN7 881 aa20.25■□□□□ 0.83
ECHDC1-220ENST00000528402 NPATQ14207 1427 aa20.25■□□□□ 0.83
ECHDC1-220ENST00000528402 SCAF11Q99590 1463 aaKnown RBP20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 CAMSAP1Q5T5Y3 1602 aa20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 CDCA8Q53HL2 280 aa20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 POLR3GLQ9BT43 218 aa20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 IFT172Q9UG01 1749 aa20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 IQGAP1P46940 1657 aa20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 EIF3AQ14152 1382 aaKnown RBP20.23■□□□□ 0.83
ECHDC1-220ENST00000528402 COL17A1Q9UMD9 1497 aaPredicted RBP20.22■□□□□ 0.83
ECHDC1-220ENST00000528402 REREQ9P2R6 1566 aa20.22■□□□□ 0.83
ECHDC1-220ENST00000528402 TESK2Q96S53 571 aa20.22■□□□□ 0.83
ECHDC1-220ENST00000528402 ADGRB3O60242 1522 aa20.21■□□□□ 0.83
ECHDC1-220ENST00000528402 NOS1P29475 1434 aa20.21■□□□□ 0.83
ECHDC1-220ENST00000528402 RALBP1Q15311 655 aa20.2■□□□□ 0.82
ECHDC1-220ENST00000528402 NRXN1Q9ULB1 1477 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms