RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.45■■■□□ 2.319e-9■■■□□ 15.1
VPS28-209ENST00000528142 ZNF518AQ6AHZ1 1483 aa29.45■■■□□ 2.31
VPS28-209ENST00000528142 KDM5CP41229 1560 aa29.45■■■□□ 2.3
VPS28-209ENST00000528142 RAPGEF3O95398 923 aa29.43■■■□□ 2.3
VPS28-209ENST00000528142 NBPF8Q3BBV2 869 aa29.43■■■□□ 2.3
VPS28-209ENST00000528142 KIDINS220Q9ULH0 1771 aa29.43■■■□□ 2.3
VPS28-209ENST00000528142 RICTORQ6R327 1708 aa29.41■■■□□ 2.3
VPS28-209ENST00000528142 HIRIP3Q9BW71 556 aaPredicted RBP29.41■■■□□ 2.3
VPS28-209ENST00000528142 FRMPD1Q5SYB0 1578 aa29.4■■■□□ 2.3
VPS28-209ENST00000528142 PLA2R1Q13018 1463 aa29.37■■■□□ 2.29
VPS28-209ENST00000528142 DHX29Q7Z478 1369 aaKnown RBP29.37■■■□□ 2.29
VPS28-209ENST00000528142 MLH3Q9UHC1 1453 aa29.34■■■□□ 2.29
VPS28-209ENST00000528142 COL17A1Q9UMD9 1497 aaPredicted RBP29.34■■■□□ 2.29
VPS28-209ENST00000528142 DEPDC5O75140 1603 aa29.33■■■□□ 2.29
VPS28-209ENST00000528142 HECW2Q9P2P5 1572 aa29.32■■■□□ 2.28
VPS28-209ENST00000528142 MYT1LQ9UL68 1186 aa29.31■■■□□ 2.28
VPS28-209ENST00000528142 ATP10AO60312 1499 aa29.31■■■□□ 2.28
VPS28-209ENST00000528142 HSPA5P11021 654 aaKnown RBP29.31■■■□□ 2.28
VPS28-209ENST00000528142 EIF4G2P78344 907 aaKnown RBP eCLIP29.29■■■□□ 2.28
VPS28-209ENST00000528142 CCDC144AA2RUR9 1427 aa29.29■■■□□ 2.28
VPS28-209ENST00000528142 UHRF1BP1Q6BDS2 1440 aa29.29■■■□□ 2.28
VPS28-209ENST00000528142 ABCA6Q8N139 1617 aa29.28■■■□□ 2.28
VPS28-209ENST00000528142 EIF2AK4Q9P2K8 1649 aaKnown RBP29.28■■■□□ 2.28
VPS28-209ENST00000528142 DDX10Q13206 875 aaKnown RBP29.27■■■□□ 2.28
VPS28-209ENST00000528142 VWDEQ8N2E2 1590 aa29.26■■■□□ 2.27
VPS28-209ENST00000528142 KIF3BO15066 747 aa29.25■■■□□ 2.27
VPS28-209ENST00000528142 YEATS2Q9ULM3 1422 aa29.24■■■□□ 2.27
VPS28-209ENST00000528142 TRHP20396 242 aaPredicted RBP29.23■■■□□ 2.27
VPS28-209ENST00000528142 ZMYM4Q5VZL5 1548 aa29.23■■■□□ 2.27
VPS28-209ENST00000528142 A2MP01023 1474 aa29.22■■■□□ 2.27
VPS28-209ENST00000528142 DIP2CQ9Y2E4 1556 aa29.22■■■□□ 2.27
VPS28-209ENST00000528142 PRDM15P57071 1507 aaPredicted RBP29.21■■■□□ 2.27
VPS28-209ENST00000528142 MROH1Q8NDA8 1641 aa29.21■■■□□ 2.27
VPS28-209ENST00000528142 SPATA31E1Q6ZUB1 1445 aa29.2■■■□□ 2.27
VPS28-209ENST00000528142 KANK1Q14678 1352 aa29.2■■■□□ 2.27
VPS28-209ENST00000528142 E9PCH4 1651 aa29.18■■■□□ 2.26
VPS28-209ENST00000528142 TET3O43151 1660 aa29.16■■■□□ 2.26
VPS28-209ENST00000528142 DCAF11Q8TEB1 546 aa29.16■■■□□ 2.26
VPS28-209ENST00000528142 PTPRTO14522 1441 aa29.15■■■□□ 2.26
VPS28-209ENST00000528142 ZNF326Q5BKZ1 582 aaKnown RBP29.15■■■□□ 2.26
VPS28-209ENST00000528142 RALGAPBQ86X10 1494 aa29.14■■■□□ 2.26
VPS28-209ENST00000528142 KDM2AQ9Y2K7 1162 aa29.13■■■□□ 2.25
VPS28-209ENST00000528142 WASHC2AQ641Q2 1341 aa29.12■■■□□ 2.25
VPS28-209ENST00000528142 RNF17Q9BXT8 1623 aaKnown RBP29.11■■■□□ 2.25
VPS28-209ENST00000528142 TRPM2O94759 1503 aa29.11■■■□□ 2.25
VPS28-209ENST00000528142 LMTK2Q8IWU2 1503 aa29.08■■■□□ 2.25
VPS28-209ENST00000528142 RGL3Q3MIN7 710 aa29.08■■■□□ 2.25
VPS28-209ENST00000528142 BCORL1Q5H9F3 1711 aa29.06■■■□□ 2.24
VPS28-209ENST00000528142 PRAG1Q86YV5 1406 aa29.06■■■□□ 2.24
VPS28-209ENST00000528142 C11orf95C9JLR9 678 aaPredicted RBP29.06■■■□□ 2.24
VPS28-209ENST00000528142 USP47Q96K76 1375 aa29.05■■■□□ 2.24
VPS28-209ENST00000528142 SIGLEC1Q9BZZ2 1709 aa29.04■■■□□ 2.24
VPS28-209ENST00000528142 SPHKAPQ2M3C7 1700 aa29.04■■■□□ 2.24
VPS28-209ENST00000528142 EFCAB6Q5THR3 1501 aa29.02■■■□□ 2.24
VPS28-209ENST00000528142 CCDC7Q96M83 1385 aa29.02■■■□□ 2.24
VPS28-209ENST00000528142 CENPBP07199 599 aaPredicted RBP28.99■■■□□ 2.23
VPS28-209ENST00000528142 CARD11Q9BXL7 1154 aa28.99■■■□□ 2.23
VPS28-209ENST00000528142 CLTCL1P53675 1640 aa28.99■■■□□ 2.23
VPS28-209ENST00000528142 ARHGEF40Q8TER5 1519 aa28.98■■■□□ 2.23
VPS28-209ENST00000528142 YTHDC1Q96MU7 727 aaKnown RBP28.98■■■□□ 2.23
VPS28-209ENST00000528142 GGT6Q6P531 493 aa28.96■■■□□ 2.23
VPS28-209ENST00000528142 REREQ9P2R6 1566 aa28.96■■■□□ 2.23
VPS28-209ENST00000528142 TRPM1Q7Z4N2 1603 aa28.95■■■□□ 2.22
VPS28-209ENST00000528142 KIF7Q2M1P5 1343 aa28.94■■■□□ 2.22
VPS28-209ENST00000528142 ROCK2O75116 1388 aaKnown RBP28.94■■■□□ 2.22
VPS28-209ENST00000528142 CEP152O94986 1710 aa28.93■■■□□ 2.22
VPS28-209ENST00000528142 GPRASP1Q5JY77 1395 aa28.93■■■□□ 2.22
VPS28-209ENST00000528142 ANP32CO43423 234 aa28.93■■■□□ 2.22
VPS28-209ENST00000528142 NEURL4Q96JN8 1562 aa28.92■■■□□ 2.22
VPS28-209ENST00000528142 ABCC3O15438 1527 aa28.91■■■□□ 2.22
VPS28-209ENST00000528142 STAC3Q96MF2 364 aa28.9■■■□□ 2.22
VPS28-209ENST00000528142 NPATQ14207 1427 aa28.89■■■□□ 2.22
VPS28-209ENST00000528142 CNTLNQ9NXG0 1405 aa28.89■■■□□ 2.22
VPS28-209ENST00000528142 AGLP35573 1532 aa28.88■■■□□ 2.21
VPS28-209ENST00000528142 POLR1AO95602 1720 aaPredicted RBP28.88■■■□□ 2.21
VPS28-209ENST00000528142 NBPF1Q3BBV0 1214 aa28.87■■■□□ 2.21
VPS28-209ENST00000528142 WASHC2CQ9Y4E1 1318 aa28.87■■■□□ 2.21
VPS28-209ENST00000528142 UGGT1Q9NYU2 1555 aa28.85■■■□□ 2.21
VPS28-209ENST00000528142 ARID4BQ4LE39 1312 aaPredicted RBP28.85■■■□□ 2.21
VPS28-209ENST00000528142 CCER2I3L3R5 266 aa28.85■■■□□ 2.21
VPS28-209ENST00000528142 LAMC1P11047 1609 aa28.84■■■□□ 2.21
VPS28-209ENST00000528142 ST20-MTHFSA0A0A6YYL1 179 aa28.83■■■□□ 2.21
VPS28-209ENST00000528142 MADDQ8WXG6 1647 aa28.81■■■□□ 2.2
VPS28-209ENST00000528142 CAMSAP1Q5T5Y3 1602 aa28.78■■■□□ 2.2
VPS28-209ENST00000528142 ARHGAP31Q2M1Z3 1444 aa28.78■■■□□ 2.2
VPS28-209ENST00000528142 NOS1P29475 1434 aa28.77■■■□□ 2.2
VPS28-209ENST00000528142 ZC3H13Q5T200 1668 aaKnown RBP28.75■■■□□ 2.19
VPS28-209ENST00000528142 MYOM2P54296 1465 aa28.73■■■□□ 2.19
VPS28-209ENST00000528142 ADGRB3O60242 1522 aa28.73■■■□□ 2.19
VPS28-209ENST00000528142 KIF1BO60333 1816 aa28.72■■■□□ 2.19
VPS28-209ENST00000528142 MLECQ14165 292 aa28.71■■■□□ 2.19
VPS28-209ENST00000528142 CFAP65Q6ZU64 1925 aaKnown RBP28.7■■■□□ 2.19
VPS28-209ENST00000528142 MROH2AA6NES4 1674 aa28.69■■■□□ 2.18
VPS28-209ENST00000528142 TESK2Q96S53 571 aa28.66■■■□□ 2.18
VPS28-209ENST00000528142 CLTCQ00610 1675 aaKnown RBP28.66■■■□□ 2.18
VPS28-209ENST00000528142 NRXN1Q9ULB1 1477 aa28.66■■■□□ 2.18
VPS28-209ENST00000528142 SYNMO15061 1565 aa28.65■■■□□ 2.18
VPS28-209ENST00000528142 IFT172Q9UG01 1749 aa28.65■■■□□ 2.18
VPS28-209ENST00000528142 ADGRF5Q8IZF2 1346 aa28.65■■■□□ 2.18
VPS28-209ENST00000528142 POLR3GLQ9BT43 218 aa28.64■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms