RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 MLECQ14165 292 aa13.8□□□□□ -0.2
USP48-212ENST00000527823 FAM9AQ8IZU1 332 aaPredicted RBP13.8□□□□□ -0.2
USP48-212ENST00000527823 LTBP4Q8N2S1 1624 aa13.79□□□□□ -0.2
USP48-212ENST00000527823 PLCH2O75038 1416 aa13.79□□□□□ -0.2
USP48-212ENST00000527823 UHRF1BP1Q6BDS2 1440 aa13.79□□□□□ -0.2
USP48-212ENST00000527823 LRRIQ1Q96JM4 1722 aa13.78□□□□□ -0.2
USP48-212ENST00000527823 SETD1BQ9UPS6 1966 aaKnown RBP13.78□□□□□ -0.2
USP48-212ENST00000527823 ZNF518AQ6AHZ1 1483 aa13.76□□□□□ -0.21
USP48-212ENST00000527823 PLEKHD1A6NEE1 506 aa13.76□□□□□ -0.21
USP48-212ENST00000527823 CDC42BPBQ9Y5S2 1711 aa13.75□□□□□ -0.21
USP48-212ENST00000527823 CEBPAP49715 358 aaPredicted RBP13.74□□□□□ -0.21
USP48-212ENST00000527823 ITSN2Q9NZM3 1697 aa13.74□□□□□ -0.21
USP48-212ENST00000527823 IQSEC2Q5JU85 1478 aa13.74□□□□□ -0.21
USP48-212ENST00000527823 PTPRTO14522 1441 aa13.73□□□□□ -0.21
USP48-212ENST00000527823 PREX2Q70Z35 1606 aa13.73□□□□□ -0.21
USP48-212ENST00000527823 RGL2O15211 777 aa13.72□□□□□ -0.21
USP48-212ENST00000527823 RANGAP1P46060 587 aaPredicted RBP13.72□□□□□ -0.21
USP48-212ENST00000527823 ABCC1P33527 1531 aa13.72□□□□□ -0.21
USP48-212ENST00000527823 ARHGAP5Q13017 1502 aa13.72□□□□□ -0.21
USP48-212ENST00000527823 MROH2AA6NES4 1674 aa13.71□□□□□ -0.21
USP48-212ENST00000527823 EEA1Q15075 1411 aa13.71□□□□□ -0.22
USP48-212ENST00000527823 NCOA1Q15788 1441 aa13.71□□□□□ -0.22
USP48-212ENST00000527823 AGLP35573 1532 aa13.7□□□□□ -0.22
USP48-212ENST00000527823 ZNF142P52746 1687 aaPredicted RBP13.7□□□□□ -0.22
USP48-212ENST00000527823 PYGBP11216 843 aa13.7□□□□□ -0.22
USP48-212ENST00000527823 KIDINS220Q9ULH0 1771 aa13.7□□□□□ -0.22
USP48-212ENST00000527823 MYO3AQ8NEV4 1616 aa13.68□□□□□ -0.22
USP48-212ENST00000527823 PAK3O75914 559 aaPredicted RBP13.68□□□□□ -0.22
USP48-212ENST00000527823 CD44P16070 742 aaKnown RBP13.68□□□□□ -0.22
USP48-212ENST00000527823 CAMSAP1Q5T5Y3 1602 aa13.67□□□□□ -0.22
USP48-212ENST00000527823 MLH3Q9UHC1 1453 aa13.67□□□□□ -0.22
USP48-212ENST00000527823 TROQ12816 1431 aaPredicted RBP13.66□□□□□ -0.22
USP48-212ENST00000527823 CDC42BPAQ5VT25 1732 aa13.66□□□□□ -0.22
USP48-212ENST00000527823 SUPT6HQ7KZ85 1726 aaKnown RBP13.66□□□□□ -0.22
USP48-212ENST00000527823 CCDC61Q9Y6R9 512 aa13.65□□□□□ -0.22
USP48-212ENST00000527823 ARHGAP35Q9NRY4 1499 aa13.64□□□□□ -0.23
USP48-212ENST00000527823 ZRANB1Q9UGI0 708 aa13.64□□□□□ -0.23
USP48-212ENST00000527823 CHRM1P11229 460 aaPredicted RBP13.63□□□□□ -0.23
USP48-212ENST00000527823 RNF25Q96BH1 459 aaPredicted RBP13.63□□□□□ -0.23
USP48-212ENST00000527823 FMN1Q68DA7 1419 aa13.63□□□□□ -0.23
USP48-212ENST00000527823 TRAPPC8Q9Y2L5 1435 aa13.63□□□□□ -0.23
USP48-212ENST00000527823 EFCAB2Q5VUJ9 269 aa13.62□□□□□ -0.23
USP48-212ENST00000527823 CLTCQ00610 1675 aaKnown RBP13.62□□□□□ -0.23
USP48-212ENST00000527823 C19orf67A6NJJ6 358 aa13.61□□□□□ -0.23
USP48-212ENST00000527823 AFAP1Q8N556 730 aa13.61□□□□□ -0.23
USP48-212ENST00000527823 PLXNC1O60486 1568 aa13.61□□□□□ -0.23
USP48-212ENST00000527823 CLIP1P30622 1438 aa13.6□□□□□ -0.23
USP48-212ENST00000527823 SAMD9LQ8IVG5 1584 aa13.6□□□□□ -0.23
USP48-212ENST00000527823 CNTLNQ9NXG0 1405 aa13.6□□□□□ -0.23
USP48-212ENST00000527823 CEP170BQ9Y4F5 1589 aaPredicted RBP13.6□□□□□ -0.23
USP48-212ENST00000527823 MED1Q15648 1581 aaPredicted RBP13.59□□□□□ -0.23
USP48-212ENST00000527823 INO80Q9ULG1 1556 aaPredicted RBP13.59□□□□□ -0.23
USP48-212ENST00000527823 NPATQ14207 1427 aa13.59□□□□□ -0.23
USP48-212ENST00000527823 HAX1O00165 279 aa13.58□□□□□ -0.24
USP48-212ENST00000527823 PLA2R1Q13018 1463 aa13.57□□□□□ -0.24
USP48-212ENST00000527823 TCOF1Q13428 1488 aaKnown RBP13.57□□□□□ -0.24
USP48-212ENST00000527823 POLR1AO95602 1720 aaPredicted RBP13.57□□□□□ -0.24
USP48-212ENST00000527823 SYCP2Q9BX26 1530 aa13.57□□□□□ -0.24
USP48-212ENST00000527823 RIOK3O14730 519 aaKnown RBP13.55□□□□□ -0.24
USP48-212ENST00000527823 POTEHQ6S545 545 aa13.55□□□□□ -0.24
USP48-212ENST00000527823 ZNF335Q9H4Z2 1342 aaPredicted RBP13.55□□□□□ -0.24
USP48-212ENST00000527823 PHF12Q96QT6 1004 aa13.54□□□□□ -0.24
USP48-212ENST00000527823 ATP7AQ04656 1500 aa13.54□□□□□ -0.24
USP48-212ENST00000527823 CCDC18Q5T9S5 1454 aa13.53□□□□□ -0.24
USP48-212ENST00000527823 NEURL4Q96JN8 1562 aa13.53□□□□□ -0.24
USP48-212ENST00000527823 KIF12Q96FN5 646 aa13.51□□□□□ -0.25
USP48-212ENST00000527823 MYT1LQ9UL68 1186 aa13.51□□□□□ -0.25
USP48-212ENST00000527823 PTPRKQ15262 1439 aa13.5□□□□□ -0.25
USP48-212ENST00000527823 MAP3K13O43283 966 aa13.5□□□□□ -0.25
USP48-212ENST00000527823 EVX2Q03828 476 aa13.5□□□□□ -0.25
USP48-212ENST00000527823 ATP1B4Q9UN42 357 aaPredicted RBP13.5□□□□□ -0.25
USP48-212ENST00000527823 CDK11AQ9UQ88 783 aaPredicted RBP13.5□□□□□ -0.25
USP48-212ENST00000527823 ADGBQ8N7X0 1667 aa13.5□□□□□ -0.25
USP48-212ENST00000527823 DNMT1P26358 1616 aaKnown RBP13.5□□□□□ -0.25
USP48-212ENST00000527823 NCKAP5LQ9HCH0 1330 aa13.49□□□□□ -0.25
USP48-212ENST00000527823 UBAP1LF5GYI3 381 aa13.49□□□□□ -0.25
USP48-212ENST00000527823 ESF1Q9H501 851 aaKnown RBP13.49□□□□□ -0.25
USP48-212ENST00000527823 PCDHB8Q9UN66 801 aa13.49□□□□□ -0.25
USP48-212ENST00000527823 PCDHB13Q9Y5F0 798 aa13.49□□□□□ -0.25
USP48-212ENST00000527823 ZMYM3Q14202 1370 aa13.48□□□□□ -0.25
USP48-212ENST00000527823 CHGAP10645 457 aaKnown RBP13.48□□□□□ -0.25
USP48-212ENST00000527823 ALKQ9UM73 1620 aa13.48□□□□□ -0.25
USP48-212ENST00000527823 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
USP48-212ENST00000527823 CASKIN1Q8WXD9 1431 aa13.47□□□□□ -0.25
USP48-212ENST00000527823 A2MP01023 1474 aa13.46□□□□□ -0.25
USP48-212ENST00000527823 CPS1P31327 1500 aa13.45□□□□□ -0.26
USP48-212ENST00000527823 A2ML1A8K2U0 1454 aa13.45□□□□□ -0.26
USP48-212ENST00000527823 FYCO1Q9BQS8 1478 aa13.45□□□□□ -0.26
USP48-212ENST00000527823 VGFO15240 615 aaPredicted RBP13.45□□□□□ -0.26
USP48-212ENST00000527823 ZNF467Q7Z7K2 595 aaPredicted RBP13.45□□□□□ -0.26
USP48-212ENST00000527823 GPATCH8Q9UKJ3 1502 aaKnown RBP13.44□□□□□ -0.26
USP48-212ENST00000527823 IFNL1Q8IU54 200 aa13.44□□□□□ -0.26
USP48-212ENST00000527823 VWDEQ8N2E2 1590 aa13.44□□□□□ -0.26
USP48-212ENST00000527823 TAOK2Q9UL54 1235 aa13.43□□□□□ -0.26
USP48-212ENST00000527823 STRCP1A6NGW2 1772 aa13.41□□□□□ -0.26
USP48-212ENST00000527823 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.41□□□□□ -0.26
USP48-212ENST00000527823 ZFP91Q96JP5 570 aaPredicted RBP13.41□□□□□ -0.26
USP48-212ENST00000527823 SGIP1Q9BQI5 828 aa13.41□□□□□ -0.26
USP48-212ENST00000527823 HSPA1LP34931 641 aa13.4□□□□□ -0.26
USP48-212ENST00000527823 TIAM1Q13009 1591 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms