RNA–Protein interactions for RNA: ENST00000525878.5

CSDE1-210, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-210ENST00000525878 PDIA6Q15084 440 aa12.56□□□□□ -0.4
CSDE1-210ENST00000525878 ARIH1Q9Y4X5 557 aaPredicted RBP12.55□□□□□ -0.4
CSDE1-210ENST00000525878 E2F4Q16254 413 aa12.53□□□□□ -0.4
CSDE1-210ENST00000525878 C6orf132Q5T0Z8 1188 aa12.52□□□□□ -0.41
CSDE1-210ENST00000525878 PROX2Q3B8N5 592 aa12.51□□□□□ -0.41
CSDE1-210ENST00000525878 MRPL50Q8N5N7 158 aaKnown RBP12.51□□□□□ -0.41
CSDE1-210ENST00000525878 NBPF3Q9H094 633 aa12.51□□□□□ -0.41
CSDE1-210ENST00000525878 RABGEF1Q9UJ41 708 aa12.51□□□□□ -0.41
CSDE1-210ENST00000525878 SPDYE16A6NNV3 312 aaPredicted RBP12.5□□□□□ -0.41
CSDE1-210ENST00000525878 DDX12PQ92771 950 aa12.5□□□□□ -0.41
CSDE1-210ENST00000525878 PLA2G2EQ9NZK7 142 aa12.5□□□□□ -0.41
CSDE1-210ENST00000525878 THSD4Q6ZMP0 1018 aa12.48□□□□□ -0.41
CSDE1-210ENST00000525878 ONECUT3O60422 494 aaPredicted RBP12.47□□□□□ -0.41
CSDE1-210ENST00000525878 WDR70Q9NW82 654 aa12.46□□□□□ -0.41
CSDE1-210ENST00000525878 EN1Q05925 392 aaPredicted RBP12.45□□□□□ -0.42
CSDE1-210ENST00000525878 WNT2BQ93097 391 aa12.45□□□□□ -0.42
CSDE1-210ENST00000525878 RBM33Q96EV2 1170 aaKnown RBP12.44□□□□□ -0.42
CSDE1-210ENST00000525878 GOLGA8CPA6NN73 597 aa12.43□□□□□ -0.42
CSDE1-210ENST00000525878 PTPN5P54829 565 aa12.43□□□□□ -0.42
CSDE1-210ENST00000525878 NBR1Q14596 966 aa12.43□□□□□ -0.42
CSDE1-210ENST00000525878 KIAA1468Q9P260 1216 aa12.42□□□□□ -0.42
CSDE1-210ENST00000525878 LAPTM4BQ86VI4 370 aa12.41□□□□□ -0.42
CSDE1-210ENST00000525878 TRIM6-TRIM34B2RNG4 842 aa12.4□□□□□ -0.42
CSDE1-210ENST00000525878 TSR1Q2NL82 804 aaKnown RBP12.4□□□□□ -0.42
CSDE1-210ENST00000525878 PRIM1P49642 420 aaKnown RBP12.38□□□□□ -0.43
CSDE1-210ENST00000525878 MAP3K7O43318 606 aa12.37□□□□□ -0.43
CSDE1-210ENST00000525878 TSHZ2Q9NRE2 1034 aa12.37□□□□□ -0.43
CSDE1-210ENST00000525878 ANKK1Q8NFD2 765 aa12.35□□□□□ -0.43
CSDE1-210ENST00000525878 ZFRQ96KR1 1074 aaKnown RBP12.35□□□□□ -0.43
CSDE1-210ENST00000525878 IFFO2Q5TF58 517 aa12.34□□□□□ -0.43
CSDE1-210ENST00000525878 SOWAHBA6NEL2 793 aa12.33□□□□□ -0.44
CSDE1-210ENST00000525878 GRXCR2A6NFK2 248 aa12.33□□□□□ -0.44
CSDE1-210ENST00000525878 OSBPP22059 807 aa12.33□□□□□ -0.44
CSDE1-210ENST00000525878 SEPT9Q9UHD8 586 aaPredicted RBP12.33□□□□□ -0.44
CSDE1-210ENST00000525878 TSKSQ9UJT2 592 aa12.33□□□□□ -0.44
CSDE1-210ENST00000525878 FAM98CQ17RN3 349 aaKnown RBP12.31□□□□□ -0.44
CSDE1-210ENST00000525878 BCAMP50895 628 aa12.3□□□□□ -0.44
CSDE1-210ENST00000525878 CERKQ8TCT0 537 aa12.3□□□□□ -0.44
CSDE1-210ENST00000525878 PRSS12P56730 875 aa12.28□□□□□ -0.44
CSDE1-210ENST00000525878 PACS2Q86VP3 889 aa12.28□□□□□ -0.44
CSDE1-210ENST00000525878 CDCA7LQ96GN5 454 aa12.28□□□□□ -0.44
CSDE1-210ENST00000525878 FAM198AQ9UFP1 575 aa12.28□□□□□ -0.44
CSDE1-210ENST00000525878 ARHGEF1Q92888 912 aaKnown RBP12.27□□□□□ -0.45
CSDE1-210ENST00000525878 CDHR5Q9HBB8 845 aa12.25□□□□□ -0.45
CSDE1-210ENST00000525878 NYAP1Q6ZVC0 841 aa12.24□□□□□ -0.45
CSDE1-210ENST00000525878 KCNV2Q8TDN2 545 aa12.24□□□□□ -0.45
CSDE1-210ENST00000525878 ITGBL1O95965 494 aaPredicted RBP12.23□□□□□ -0.45
CSDE1-210ENST00000525878 RBM27Q9P2N5 1060 aaKnown RBP12.23□□□□□ -0.45
CSDE1-210ENST00000525878 C3orf80F5H4A9 247 aa12.22□□□□□ -0.45
CSDE1-210ENST00000525878 WBP1LQ9NX94 342 aa12.22□□□□□ -0.45
CSDE1-210ENST00000525878 NPDC1Q9NQX5 325 aaPredicted RBP12.21□□□□□ -0.45
CSDE1-210ENST00000525878 TTC13Q8NBP0 860 aa12.2□□□□□ -0.46
CSDE1-210ENST00000525878 LRCH3Q96II8 777 aa12.2□□□□□ -0.46
CSDE1-210ENST00000525878 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-210ENST00000525878 TATDN2Q93075 761 aa12.19□□□□□ -0.46
CSDE1-210ENST00000525878 TSR3Q9UJK0 312 aaKnown RBP12.19□□□□□ -0.46
CSDE1-210ENST00000525878 A0A0G2JS52 829 aa12.18□□□□□ -0.46
CSDE1-210ENST00000525878 SMAPO00193 183 aa12.18□□□□□ -0.46
CSDE1-210ENST00000525878 MLLT3P42568 568 aaPredicted RBP12.17□□□□□ -0.46
CSDE1-210ENST00000525878 HPS5Q9UPZ3 1129 aa12.17□□□□□ -0.46
CSDE1-210ENST00000525878 NBPF26B4DH59 902 aa12.16□□□□□ -0.46
CSDE1-210ENST00000525878 RGS20O76081 388 aa12.15□□□□□ -0.46
CSDE1-210ENST00000525878 PNMA3Q9UL41 463 aa12.15□□□□□ -0.46
CSDE1-210ENST00000525878 NUDT18Q6ZVK8 323 aa12.13□□□□□ -0.47
CSDE1-210ENST00000525878 SAMD7Q7Z3H4 446 aa12.13□□□□□ -0.47
CSDE1-210ENST00000525878 PLCB2Q00722 1185 aa12.12□□□□□ -0.47
CSDE1-210ENST00000525878 PADI6Q6TGC4 694 aa12.11□□□□□ -0.47
CSDE1-210ENST00000525878 P3H3Q8IVL6 736 aa12.1□□□□□ -0.47
CSDE1-210ENST00000525878 PPP4CP60510 307 aa12.09□□□□□ -0.47
CSDE1-210ENST00000525878 KCNC4Q03721 635 aa12.07□□□□□ -0.48
CSDE1-210ENST00000525878 PTGDRQ13258 359 aa12.06□□□□□ -0.48
CSDE1-210ENST00000525878 EYA1Q99502 592 aa12.06□□□□□ -0.48
CSDE1-210ENST00000525878 SEMA3EO15041 775 aa12.02□□□□□ -0.49
CSDE1-210ENST00000525878 TJAP1Q5JTD0 557 aa12.02□□□□□ -0.49
CSDE1-210ENST00000525878 HDGFP51858 240 aaKnown RBP12□□□□□ -0.49
CSDE1-210ENST00000525878 SWT1Q5T5J6 900 aaKnown RBP12□□□□□ -0.49
CSDE1-210ENST00000525878 APLP1P51693 650 aa11.97□□□□□ -0.49
CSDE1-210ENST00000525878 SLF2Q8IX21 1173 aa11.96□□□□□ -0.49
CSDE1-210ENST00000525878 MTRQ99707 1265 aa11.96□□□□□ -0.49
CSDE1-210ENST00000525878 ADGRG1Q9Y653 693 aa11.96□□□□□ -0.49
CSDE1-210ENST00000525878 NUTM2FA1L443 756 aa11.95□□□□□ -0.5
CSDE1-210ENST00000525878 NECTIN2Q92692 538 aa11.95□□□□□ -0.5
CSDE1-210ENST00000525878 TESPA1A2RU30 521 aaPredicted RBP11.94□□□□□ -0.5
CSDE1-210ENST00000525878 RNF40O75150 1001 aa11.94□□□□□ -0.5
CSDE1-210ENST00000525878 IL21Q9HBE4 155 aa11.94□□□□□ -0.5
CSDE1-210ENST00000525878 FCHSD2O94868 740 aa11.93□□□□□ -0.5
CSDE1-210ENST00000525878 DNAJB2P25686 324 aa11.91□□□□□ -0.5
CSDE1-210ENST00000525878 RBM46Q8TBY0 533 aaKnown RBP11.91□□□□□ -0.5
CSDE1-210ENST00000525878 IRX2Q9BZI1 471 aaPredicted RBP11.9□□□□□ -0.5
CSDE1-210ENST00000525878 TMEM134Q9H6X4 195 aa11.9□□□□□ -0.5
CSDE1-210ENST00000525878 ZNF516Q92618 1163 aa11.89□□□□□ -0.51
CSDE1-210ENST00000525878 RCCD1A6NED2 376 aa11.87□□□□□ -0.51
CSDE1-210ENST00000525878 SLC4A3P48751 1232 aa11.87□□□□□ -0.51
CSDE1-210ENST00000525878 FAM161AQ3B820 660 aa11.87□□□□□ -0.51
CSDE1-210ENST00000525878 RBM26Q5T8P6 1007 aaKnown RBP11.86□□□□□ -0.51
CSDE1-210ENST00000525878 KDM2AQ9Y2K7 1162 aa11.86□□□□□ -0.51
CSDE1-210ENST00000525878 HIC1Q14526 733 aa11.85□□□□□ -0.51
CSDE1-210ENST00000525878 SMYD5Q6GMV2 418 aa11.85□□□□□ -0.51
CSDE1-210ENST00000525878 HAP1P54257 671 aaPredicted RBP11.84□□□□□ -0.51
CSDE1-210ENST00000525878 PRR14Q9BWN1 585 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms